Wall clock time and date at job start Tue Mar 31 2020 17:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.42993 * 2 1 4 4 C 1.54892 * 110.48522 * 237.31850 * 2 1 3 5 5 C 1.54957 * 102.77733 * 203.40356 * 4 2 1 6 6 C 1.54262 * 104.16379 * 37.88468 * 5 4 2 7 7 H 1.09004 * 110.02910 * 95.75276 * 6 5 4 8 8 N 1.46490 * 110.03855 * 217.13757 * 6 5 4 9 9 C 1.46499 * 120.00020 * 51.76105 * 8 6 5 10 10 C 1.53001 * 109.47296 * 251.46866 * 9 8 6 11 11 O 1.42901 * 109.46989 * 58.79074 * 10 9 8 12 12 S 1.65604 * 120.00315 * 231.76570 * 8 6 5 13 13 O 1.42103 * 104.27281 * 333.92563 * 12 8 6 14 14 O 1.42099 * 104.27781 * 206.07249 * 12 8 6 15 15 C 1.81398 * 104.45112 * 89.99434 * 12 8 6 16 16 C 1.52995 * 109.47133 * 189.80255 * 15 12 8 17 17 C 1.50699 * 115.55248 * 305.85321 * 16 15 12 18 18 H 1.08004 * 119.99493 * 93.00491 * 17 16 15 19 19 C 1.37870 * 120.00406 * 273.00360 * 17 16 15 20 20 N 1.31515 * 120.00215 * 13.93767 * 19 17 16 21 21 Si 1.86801 * 120.00199 * 193.93770 * 19 17 16 22 22 H 1.48500 * 109.47372 * 180.02562 * 21 19 17 23 23 H 1.48496 * 109.47231 * 300.00114 * 21 19 17 24 24 H 1.48498 * 109.47293 * 59.99991 * 21 19 17 25 25 C 1.53003 * 117.51905 * 91.55924 * 16 15 12 26 26 C 1.53002 * 60.00265 * 107.48033 * 25 16 15 27 27 C 1.53879 * 106.63961 * 336.44887 * 6 5 4 28 28 H 1.09004 * 109.46659 * 297.45500 * 1 2 3 29 29 H 1.08999 * 109.47319 * 57.45518 * 1 2 3 30 30 H 1.08997 * 109.46863 * 177.45872 * 1 2 3 31 31 H 1.08997 * 110.75550 * 321.69520 * 4 2 1 32 32 H 1.09002 * 110.75399 * 84.87731 * 4 2 1 33 33 H 1.09006 * 110.47899 * 279.23269 * 5 4 2 34 34 H 1.08999 * 110.53149 * 156.57095 * 5 4 2 35 35 H 1.08999 * 109.47131 * 11.47371 * 9 8 6 36 36 H 1.09004 * 109.47008 * 131.47032 * 9 8 6 37 37 H 1.08998 * 109.47008 * 178.79120 * 10 9 8 38 38 H 1.08995 * 109.47176 * 298.79474 * 10 9 8 39 39 H 0.96695 * 114.00431 * 179.97438 * 11 10 9 40 40 H 1.09001 * 109.47033 * 69.80569 * 15 12 8 41 41 H 1.08996 * 109.47496 * 309.80727 * 15 12 8 42 42 H 0.97008 * 119.99210 * 354.35003 * 20 19 17 43 43 H 1.08994 * 117.50170 * 214.96921 * 25 16 15 44 44 H 1.09003 * 117.49426 * 359.97438 * 25 16 15 45 45 H 1.09000 * 117.49662 * 252.51872 * 26 25 16 46 46 H 1.08991 * 117.49796 * 107.48840 * 26 25 16 47 47 H 1.09004 * 110.03316 * 119.25206 * 27 6 5 48 48 H 1.08996 * 110.03061 * 240.63746 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0721 -0.7835 -1.2213 5 6 3.4912 -1.2000 -0.7588 6 6 3.3167 -1.5395 0.7358 7 1 3.1697 -2.6124 0.8602 8 7 4.4943 -1.1039 1.4903 9 6 4.9821 0.2711 1.3573 10 6 6.2955 0.2726 0.5725 11 8 6.0814 -0.3082 -0.7155 12 16 5.2744 -2.1657 2.4936 13 8 4.2707 -3.1022 2.8611 14 8 5.8946 -1.3368 3.4671 15 6 6.5228 -2.9519 1.4382 16 6 7.1518 -4.1305 2.1838 17 6 7.7243 -3.8105 3.5406 18 1 7.1176 -3.9343 4.4255 19 6 9.0224 -3.3598 3.6523 20 7 9.6699 -2.9483 2.5841 21 14 9.8617 -3.3334 5.3210 22 1 11.2429 -2.8087 5.1722 23 1 9.0973 -2.4584 6.2457 24 1 9.9119 -4.7115 5.8717 25 6 6.5154 -5.5087 1.9927 26 6 7.8670 -5.1943 1.3484 27 6 2.0700 -0.7773 1.2182 28 1 -0.3633 0.4738 0.9120 29 1 -0.3634 0.5528 -0.8663 30 1 -0.3633 -1.0266 -0.0456 31 1 1.4581 -1.6618 -1.4203 32 1 2.1220 -0.1416 -2.1008 33 1 4.1908 -0.3733 -0.8830 34 1 3.8319 -2.0754 -1.3117 35 1 4.2414 0.8697 0.8272 36 1 5.1502 0.6944 2.3476 37 1 6.6474 1.2975 0.4550 38 1 7.0426 -0.3083 1.1132 39 1 6.8735 -0.3398 -1.2693 40 1 7.2963 -2.2258 1.1879 41 1 6.0514 -3.3106 0.5233 42 1 9.2651 -3.0381 1.7071 43 1 6.5107 -6.1839 2.8484 44 1 5.6480 -5.5758 1.3360 45 1 7.8889 -5.0546 0.2676 46 1 8.7514 -5.6626 1.7801 47 1 1.3177 -1.4803 1.5758 48 1 2.3412 -0.0839 2.0142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452004974.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:42 Heat of formation + Delta-G solvation = -110.958324 kcal Electronic energy + Delta-G solvation = -29302.919496 eV Core-core repulsion = 25485.261500 eV Total energy + Delta-G solvation = -3817.657996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.14326 -37.06728 -36.98959 -36.15468 -35.08797 -34.47311 -32.00503 -30.79414 -29.18676 -28.27780 -27.34619 -24.99423 -24.63029 -22.70643 -21.38434 -20.30724 -20.01576 -19.53154 -18.21323 -17.59334 -16.93772 -16.82362 -16.33379 -15.50267 -15.08214 -14.67967 -14.44314 -14.22016 -14.05107 -13.73716 -13.43104 -13.31461 -13.25998 -12.93060 -12.79791 -12.58224 -12.06315 -12.05454 -11.83819 -11.71503 -11.23873 -11.18585 -11.14218 -11.06218 -10.86619 -10.78089 -10.71672 -10.59117 -10.56893 -10.45727 -10.39168 -10.30233 -10.09213 -9.86552 -9.66104 -8.77009 -8.72161 -8.37315 -8.27520 -6.49986 -4.26474 1.06604 3.35640 3.44322 3.47287 3.64342 4.23423 4.47299 4.52827 4.62077 4.66333 4.78838 4.87264 4.99830 5.02706 5.18343 5.20928 5.30963 5.38575 5.43680 5.49212 5.54595 5.55601 5.59194 5.62244 5.71688 5.81431 5.85760 5.87938 5.94144 5.96619 6.07712 6.09387 6.13586 6.16311 6.20459 6.38649 6.39759 6.46707 6.54600 6.73743 6.77303 6.98737 7.03823 7.18368 7.67828 8.04072 8.32191 8.74780 9.52617 10.89771 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018712 B = 0.004311 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.985542 B = 6493.863867 C = 6598.608860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.071 0.929 4 C -0.120 4.120 5 C -0.140 4.140 6 C 0.149 3.851 7 H 0.093 0.907 8 N -0.997 5.997 9 C 0.124 3.876 10 C 0.040 3.960 11 O -0.559 6.559 12 S 2.618 3.382 13 O -0.970 6.970 14 O -0.948 6.948 15 C -0.564 4.564 16 C 0.024 3.976 17 C -0.603 4.603 18 H 0.061 0.939 19 C 0.046 3.954 20 N -0.891 5.891 21 Si 1.060 2.940 22 H -0.281 1.281 23 H -0.281 1.281 24 H -0.285 1.285 25 C -0.189 4.189 26 C -0.165 4.165 27 C -0.131 4.131 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.373 0.627 40 H 0.121 0.879 41 H 0.099 0.901 42 H 0.273 0.727 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.070 0.930 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.707 7.392 -9.490 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.090 0.910 4 C -0.158 4.158 5 C -0.178 4.178 6 C 0.042 3.958 7 H 0.111 0.889 8 N -0.831 5.831 9 C -0.002 4.002 10 C -0.039 4.039 11 O -0.365 6.365 12 S 2.716 3.284 13 O -0.961 6.961 14 O -0.938 6.938 15 C -0.696 4.696 16 C 0.022 3.978 17 C -0.639 4.639 18 H 0.079 0.921 19 C -0.162 4.162 20 N -0.524 5.524 21 Si 0.888 3.112 22 H -0.206 1.206 23 H -0.207 1.207 24 H -0.211 1.211 25 C -0.226 4.226 26 C -0.204 4.204 27 C -0.171 4.171 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.220 0.780 40 H 0.139 0.861 41 H 0.118 0.882 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.106 0.894 47 H 0.089 0.911 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.137 7.705 -7.547 15.503 hybrid contribution -0.440 -0.531 -1.759 1.890 sum -11.577 7.174 -9.306 16.496 Atomic orbital electron populations 1.21814 0.95289 1.01744 1.01286 1.21954 0.95150 0.99158 0.95184 0.91022 1.22572 0.96652 0.99513 0.97095 1.23031 0.97065 1.03582 0.94130 1.21439 0.84015 0.99015 0.91305 0.88887 1.57985 1.40075 1.21999 1.63040 1.21276 0.94686 0.83982 1.00279 1.22868 0.98198 0.97830 0.85017 1.86489 1.38168 1.84719 1.27095 1.04833 0.74879 0.73756 0.74965 1.93478 1.57202 1.64049 1.81359 1.93518 1.77902 1.66347 1.56036 1.30205 1.15644 1.11446 1.12272 1.18548 0.99387 0.84171 0.95725 1.21379 1.00742 1.52016 0.89803 0.92115 1.25778 0.94411 0.91195 1.04845 1.70790 1.42887 1.38809 0.99873 0.83674 0.76294 0.76872 0.74402 1.20595 1.20708 1.21093 1.23005 0.95278 1.01728 1.02603 1.22749 0.95434 1.05574 0.96607 1.22642 0.97152 0.99445 0.97811 0.92851 0.92958 0.92603 0.91781 0.91869 0.87275 0.91894 0.89353 0.88812 0.92312 0.92678 0.77968 0.86064 0.88211 0.91563 0.89352 0.90912 0.91280 0.89421 0.91104 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.12 37.16 0.34 -0.91 16 2 C -0.10 -0.96 3.46 -88.96 -0.31 -1.27 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.12 -1.21 6.33 -24.70 -0.16 -1.36 16 5 C -0.14 -1.68 5.64 -25.04 -0.14 -1.82 16 6 C 0.15 2.12 3.11 -66.82 -0.21 1.91 16 7 H 0.09 1.44 7.07 -51.93 -0.37 1.07 16 8 N -1.00 -16.06 2.49 -106.12 -0.26 -16.32 16 9 C 0.12 1.70 4.84 -4.04 -0.02 1.68 16 10 C 0.04 0.52 7.03 37.16 0.26 0.78 16 11 O -0.56 -6.49 10.17 -35.23 -0.36 -6.85 16 12 S 2.62 55.99 4.43 -107.50 -0.48 55.51 16 13 O -0.97 -22.76 16.67 -57.54 -0.96 -23.72 16 14 O -0.95 -23.33 16.41 -57.54 -0.94 -24.27 16 15 C -0.56 -11.95 5.73 37.15 0.21 -11.74 16 16 C 0.02 0.59 1.02 -155.66 -0.16 0.43 16 17 C -0.60 -16.81 7.69 -34.44 -0.26 -17.08 16 18 H 0.06 1.76 7.85 -52.48 -0.41 1.35 16 19 C 0.05 1.28 5.32 -17.82 -0.09 1.18 16 20 N -0.89 -25.29 13.57 55.43 0.75 -24.54 16 21 Si 1.06 25.24 29.93 -169.99 -5.09 20.16 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 25 C -0.19 -4.19 9.92 -26.73 -0.27 -4.46 16 26 C -0.16 -3.70 8.99 -26.73 -0.24 -3.94 16 27 C -0.13 -1.64 5.69 -25.61 -0.15 -1.78 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.48 8.12 -51.93 -0.42 0.06 16 31 H 0.06 0.62 8.04 -51.93 -0.42 0.20 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.11 1.33 3.90 -51.93 -0.20 1.13 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.00 7.07 -51.93 -0.37 0.63 16 36 H 0.09 1.33 7.48 -51.93 -0.39 0.94 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.87 6.10 -51.93 -0.32 0.55 16 39 H 0.37 3.13 9.12 45.56 0.42 3.54 16 40 H 0.12 2.58 5.81 -51.92 -0.30 2.28 16 41 H 0.10 1.84 8.09 -51.93 -0.42 1.42 16 42 H 0.27 7.55 6.16 -40.82 -0.25 7.30 16 43 H 0.09 1.96 8.14 -51.93 -0.42 1.53 16 44 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 45 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 46 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 47 H 0.07 0.87 7.84 -51.93 -0.41 0.47 16 48 H 0.07 0.91 7.62 -51.93 -0.40 0.51 16 LS Contribution 380.54 15.07 5.73 5.73 Total: -1.00 -33.39 380.54 -10.07 -43.45 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -7.28 Total: 9.22 kcal Atomic # 6 Polarization: -37.19 SS G_CDS: -1.19 Total: -38.38 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.49 Total: -40.86 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -2.26 Total: -54.84 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.09 Total: 20.16 kcal Atomic # 16 Polarization: 55.99 SS G_CDS: -0.48 Total: 55.51 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.39 -10.07 -43.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452004974.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.504 kcal (2) G-P(sol) polarization free energy of solvation -33.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds