Wall clock time and date at job start Tue Mar 31 2020 17:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.42993 * 2 1 4 4 C 1.54892 * 110.48522 * 237.31850 * 2 1 3 5 5 C 1.54957 * 102.77733 * 203.40356 * 4 2 1 6 6 C 1.54262 * 104.16379 * 37.88468 * 5 4 2 7 7 H 1.09004 * 110.02910 * 95.75276 * 6 5 4 8 8 N 1.46490 * 110.03855 * 217.13757 * 6 5 4 9 9 C 1.46499 * 120.00020 * 51.76105 * 8 6 5 10 10 C 1.53001 * 109.47296 * 251.46866 * 9 8 6 11 11 O 1.42901 * 109.46989 * 58.79074 * 10 9 8 12 12 S 1.65604 * 120.00315 * 231.76570 * 8 6 5 13 13 O 1.42103 * 104.27281 * 333.92563 * 12 8 6 14 14 O 1.42099 * 104.27781 * 206.07249 * 12 8 6 15 15 C 1.81398 * 104.45112 * 89.99434 * 12 8 6 16 16 C 1.52995 * 109.47133 * 189.80255 * 15 12 8 17 17 C 1.50699 * 115.55248 * 305.85321 * 16 15 12 18 18 H 1.08004 * 119.99493 * 93.00491 * 17 16 15 19 19 C 1.37870 * 120.00406 * 273.00360 * 17 16 15 20 20 N 1.31515 * 120.00215 * 13.93767 * 19 17 16 21 21 Si 1.86801 * 120.00199 * 193.93770 * 19 17 16 22 22 H 1.48500 * 109.47372 * 180.02562 * 21 19 17 23 23 H 1.48496 * 109.47231 * 300.00114 * 21 19 17 24 24 H 1.48498 * 109.47293 * 59.99991 * 21 19 17 25 25 C 1.53003 * 117.51905 * 91.55924 * 16 15 12 26 26 C 1.53002 * 60.00265 * 107.48033 * 25 16 15 27 27 C 1.53879 * 106.63961 * 336.44887 * 6 5 4 28 28 H 1.09004 * 109.46659 * 297.45500 * 1 2 3 29 29 H 1.08999 * 109.47319 * 57.45518 * 1 2 3 30 30 H 1.08997 * 109.46863 * 177.45872 * 1 2 3 31 31 H 1.08997 * 110.75550 * 321.69520 * 4 2 1 32 32 H 1.09002 * 110.75399 * 84.87731 * 4 2 1 33 33 H 1.09006 * 110.47899 * 279.23269 * 5 4 2 34 34 H 1.08999 * 110.53149 * 156.57095 * 5 4 2 35 35 H 1.08999 * 109.47131 * 11.47371 * 9 8 6 36 36 H 1.09004 * 109.47008 * 131.47032 * 9 8 6 37 37 H 1.08998 * 109.47008 * 178.79120 * 10 9 8 38 38 H 1.08995 * 109.47176 * 298.79474 * 10 9 8 39 39 H 0.96695 * 114.00431 * 179.97438 * 11 10 9 40 40 H 1.09001 * 109.47033 * 69.80569 * 15 12 8 41 41 H 1.08996 * 109.47496 * 309.80727 * 15 12 8 42 42 H 0.97008 * 119.99210 * 354.35003 * 20 19 17 43 43 H 1.08994 * 117.50170 * 214.96921 * 25 16 15 44 44 H 1.09003 * 117.49426 * 359.97438 * 25 16 15 45 45 H 1.09000 * 117.49662 * 252.51872 * 26 25 16 46 46 H 1.08991 * 117.49796 * 107.48840 * 26 25 16 47 47 H 1.09004 * 110.03316 * 119.25206 * 27 6 5 48 48 H 1.08996 * 110.03061 * 240.63746 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0721 -0.7835 -1.2213 5 6 3.4912 -1.2000 -0.7588 6 6 3.3167 -1.5395 0.7358 7 1 3.1697 -2.6124 0.8602 8 7 4.4943 -1.1039 1.4903 9 6 4.9821 0.2711 1.3573 10 6 6.2955 0.2726 0.5725 11 8 6.0814 -0.3082 -0.7155 12 16 5.2744 -2.1657 2.4936 13 8 4.2707 -3.1022 2.8611 14 8 5.8946 -1.3368 3.4671 15 6 6.5228 -2.9519 1.4382 16 6 7.1518 -4.1305 2.1838 17 6 7.7243 -3.8105 3.5406 18 1 7.1176 -3.9343 4.4255 19 6 9.0224 -3.3598 3.6523 20 7 9.6699 -2.9483 2.5841 21 14 9.8617 -3.3334 5.3210 22 1 11.2429 -2.8087 5.1722 23 1 9.0973 -2.4584 6.2457 24 1 9.9119 -4.7115 5.8717 25 6 6.5154 -5.5087 1.9927 26 6 7.8670 -5.1943 1.3484 27 6 2.0700 -0.7773 1.2182 28 1 -0.3633 0.4738 0.9120 29 1 -0.3634 0.5528 -0.8663 30 1 -0.3633 -1.0266 -0.0456 31 1 1.4581 -1.6618 -1.4203 32 1 2.1220 -0.1416 -2.1008 33 1 4.1908 -0.3733 -0.8830 34 1 3.8319 -2.0754 -1.3117 35 1 4.2414 0.8697 0.8272 36 1 5.1502 0.6944 2.3476 37 1 6.6474 1.2975 0.4550 38 1 7.0426 -0.3083 1.1132 39 1 6.8735 -0.3398 -1.2693 40 1 7.2963 -2.2258 1.1879 41 1 6.0514 -3.3106 0.5233 42 1 9.2651 -3.0381 1.7071 43 1 6.5107 -6.1839 2.8484 44 1 5.6480 -5.5758 1.3360 45 1 7.8889 -5.0546 0.2676 46 1 8.7514 -5.6626 1.7801 47 1 1.3177 -1.4803 1.5758 48 1 2.3412 -0.0839 2.0142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452004974.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:41 Heat of formation + Delta-G solvation = -134.098518 kcal Electronic energy + Delta-G solvation = -29303.922931 eV Core-core repulsion = 25485.261500 eV Total energy + Delta-G solvation = -3818.661430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.16070 -38.90621 -38.28207 -37.60406 -36.85842 -35.56662 -34.08842 -31.69526 -30.21698 -29.96245 -28.38438 -27.08566 -25.50553 -23.82599 -23.17923 -21.79931 -21.09329 -20.89134 -19.60042 -18.89642 -18.84533 -17.98159 -17.64039 -17.15793 -16.42623 -15.81011 -15.71933 -15.69455 -15.62983 -15.23848 -15.03306 -14.66816 -14.45291 -14.22029 -13.98464 -13.77810 -13.63436 -13.22676 -13.12631 -13.06032 -13.00371 -12.84638 -12.70650 -12.56268 -12.35417 -12.13785 -12.11679 -11.96794 -11.93566 -11.73111 -11.54167 -11.41296 -11.33573 -11.28224 -10.82678 -10.65344 -10.44660 -10.33475 -9.81554 -8.67304 -6.43419 -0.58805 1.50056 1.56054 1.75795 1.89127 2.51158 2.92463 3.07394 3.13442 3.25489 3.38445 3.52165 3.71794 3.82902 3.96113 4.01017 4.08585 4.17395 4.30569 4.36948 4.37506 4.45322 4.50455 4.55270 4.63785 4.64957 4.73076 4.76745 4.78118 4.81937 4.84752 4.93602 4.98589 5.06017 5.07206 5.17143 5.21635 5.28520 5.38424 5.38626 5.47167 5.56388 5.73218 5.85147 5.98060 6.12196 6.61013 6.90868 7.39085 8.74173 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018712 B = 0.004311 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.985542 B = 6493.863867 C = 6598.608860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 H 0.081 0.919 4 C -0.114 4.114 5 C -0.134 4.134 6 C 0.138 3.862 7 H 0.076 0.924 8 N -0.985 5.985 9 C 0.116 3.884 10 C 0.045 3.955 11 O -0.561 6.561 12 S 2.622 3.378 13 O -0.999 6.999 14 O -0.991 6.991 15 C -0.553 4.553 16 C -0.012 4.012 17 C -0.618 4.618 18 H 0.034 0.966 19 C 0.006 3.994 20 N -0.905 5.905 21 Si 1.089 2.911 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.267 1.267 25 C -0.181 4.181 26 C -0.154 4.154 27 C -0.134 4.134 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.060 0.940 35 H 0.120 0.880 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.021 0.979 39 H 0.388 0.612 40 H 0.118 0.882 41 H 0.128 0.872 42 H 0.270 0.730 43 H 0.081 0.919 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.709 8.344 -11.677 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 H 0.099 0.901 4 C -0.152 4.152 5 C -0.173 4.173 6 C 0.032 3.968 7 H 0.094 0.906 8 N -0.822 5.822 9 C -0.009 4.009 10 C -0.035 4.035 11 O -0.369 6.369 12 S 2.721 3.279 13 O -0.990 6.990 14 O -0.981 6.981 15 C -0.685 4.685 16 C -0.014 4.014 17 C -0.655 4.655 18 H 0.053 0.947 19 C -0.198 4.198 20 N -0.539 5.539 21 Si 0.912 3.088 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.193 1.193 25 C -0.219 4.219 26 C -0.192 4.192 27 C -0.173 4.173 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.138 0.862 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.039 0.961 39 H 0.239 0.761 40 H 0.136 0.864 41 H 0.147 0.853 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.117 0.883 45 H 0.114 0.886 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.138 8.639 -9.742 17.801 hybrid contribution -0.196 -0.827 -1.122 1.408 sum -12.334 7.812 -10.864 18.198 Atomic orbital electron populations 1.21798 0.94161 1.01965 1.02045 1.21933 0.96051 0.99127 0.93674 0.90064 1.22561 0.95101 0.99976 0.97558 1.22999 0.98604 1.03629 0.92044 1.21722 0.83787 0.98451 0.92809 0.90607 1.57582 1.40030 1.22016 1.62575 1.21537 0.96101 0.82684 1.00596 1.22740 0.96604 0.98933 0.85182 1.86437 1.39310 1.84703 1.26437 1.04335 0.74580 0.73660 0.75322 1.93428 1.57845 1.65289 1.82412 1.93454 1.78809 1.67251 1.58560 1.30042 1.15439 1.10202 1.12852 1.18662 1.01403 0.86007 0.95310 1.21525 1.00905 1.52183 0.90849 0.94731 1.26808 0.95137 0.90798 1.07037 1.70858 1.43069 1.39952 1.00038 0.83316 0.75937 0.77848 0.71714 1.19645 1.20758 1.19252 1.23077 0.96132 0.99920 1.02737 1.22709 0.94802 1.03986 0.97741 1.22668 0.96285 0.99410 0.98943 0.92781 0.91477 0.92766 0.91416 0.90089 0.86974 0.92072 0.86225 0.89806 0.89367 0.96107 0.76150 0.86369 0.85331 0.91897 0.90036 0.88334 0.88601 0.91201 0.91473 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.12 71.98 0.66 -1.42 16 2 C -0.09 -1.53 3.46 -9.72 -0.03 -1.57 16 3 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 4 C -0.11 -1.91 6.33 31.91 0.20 -1.71 16 5 C -0.13 -2.88 5.64 31.69 0.18 -2.70 16 6 C 0.14 3.77 3.11 45.72 0.14 3.92 16 7 H 0.08 2.32 7.07 -2.38 -0.02 2.31 16 8 N -0.98 -31.25 2.49 -489.65 -1.22 -32.47 16 9 C 0.12 3.04 4.84 86.38 0.42 3.46 16 10 C 0.04 1.10 7.03 71.98 0.51 1.60 16 11 O -0.56 -11.65 10.17 -148.98 -1.52 -13.16 16 12 S 2.62 114.28 4.43 -56.49 -0.25 114.03 16 13 O -1.00 -47.97 16.67 -127.65 -2.13 -50.10 16 14 O -0.99 -50.65 16.41 -127.65 -2.09 -52.75 16 15 C -0.55 -23.36 5.73 71.98 0.41 -22.95 16 16 C -0.01 -0.58 1.02 -52.93 -0.05 -0.63 16 17 C -0.62 -35.33 7.69 25.60 0.20 -35.14 16 18 H 0.03 2.10 7.85 -2.91 -0.02 2.07 16 19 C 0.01 0.35 5.32 84.65 0.45 0.80 16 20 N -0.91 -51.87 13.57 21.44 0.29 -51.58 16 21 Si 1.09 51.37 29.93 68.60 2.05 53.42 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 25 C -0.18 -7.93 9.92 30.60 0.30 -7.63 16 26 C -0.15 -6.78 8.99 30.60 0.27 -6.51 16 27 C -0.13 -3.15 5.69 31.32 0.18 -2.98 16 28 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.81 8.12 -2.39 -0.02 0.79 16 31 H 0.07 1.10 8.04 -2.39 -0.02 1.08 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.11 2.38 3.90 -2.38 -0.01 2.37 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.12 2.39 7.07 -2.39 -0.02 2.38 16 36 H 0.08 2.37 7.48 -2.38 -0.02 2.35 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.02 0.66 6.10 -2.39 -0.01 0.64 16 39 H 0.39 5.52 9.12 -74.06 -0.68 4.85 16 40 H 0.12 5.07 5.81 -2.39 -0.01 5.06 16 41 H 0.13 4.54 8.09 -2.39 -0.02 4.52 16 42 H 0.27 15.07 6.16 -92.70 -0.57 14.50 16 43 H 0.08 3.62 8.14 -2.39 -0.02 3.60 16 44 H 0.10 3.75 8.14 -2.39 -0.02 3.74 16 45 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 46 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 47 H 0.07 1.61 7.84 -2.38 -0.02 1.59 16 48 H 0.06 1.59 7.62 -2.39 -0.02 1.57 16 Total: -1.00 -73.42 380.54 -0.56 -73.97 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.47 Total: 32.08 kcal Atomic # 6 Polarization: -77.28 SS G_CDS: 3.83 Total: -73.45 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -0.93 Total: -84.05 kcal Atomic # 8 Polarization: -110.27 SS G_CDS: -5.74 Total: -116.01 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 2.05 Total: 53.42 kcal Atomic # 16 Polarization: 114.28 SS G_CDS: -0.25 Total: 114.03 kcal Total: -73.42 -0.56 -73.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452004974.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.125 kcal (2) G-P(sol) polarization free energy of solvation -73.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds