Wall clock time and date at job start Tue Mar 31 2020 17:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.01638 * 2 1 4 4 C 1.53880 * 110.02896 * 121.39036 * 2 1 3 5 5 C 1.54265 * 106.59955 * 119.28783 * 4 2 1 6 6 C 1.54889 * 104.19613 * 23.60296 * 5 4 2 7 7 H 1.09005 * 110.74967 * 80.56159 * 6 5 4 8 8 N 1.46494 * 110.75573 * 203.74531 * 6 5 4 9 9 C 1.46497 * 120.00327 * 66.26479 * 8 6 5 10 10 C 1.53001 * 109.46888 * 88.73915 * 9 8 6 11 11 O 1.42898 * 109.47208 * 66.29916 * 10 9 8 12 12 S 1.65603 * 119.99891 * 246.26878 * 8 6 5 13 13 O 1.42106 * 104.27657 * 206.07010 * 12 8 6 14 14 O 1.42096 * 104.27682 * 333.92677 * 12 8 6 15 15 C 1.81395 * 104.45157 * 90.00092 * 12 8 6 16 16 C 1.53000 * 109.47525 * 172.88942 * 15 12 8 17 17 C 1.50705 * 115.54950 * 39.65147 * 16 15 12 18 18 H 1.08000 * 120.00328 * 266.50231 * 17 16 15 19 19 C 1.37870 * 119.99510 * 86.49705 * 17 16 15 20 20 N 1.31518 * 120.00493 * 1.89962 * 19 17 16 21 21 Si 1.86796 * 120.00037 * 181.89747 * 19 17 16 22 22 H 1.48500 * 109.46966 * 60.00232 * 21 19 17 23 23 H 1.48503 * 109.47513 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47206 * 300.00292 * 21 19 17 25 25 C 1.53008 * 117.49725 * 253.95398 * 16 15 12 26 26 C 1.52999 * 117.50249 * 185.33192 * 16 15 12 27 27 C 1.54259 * 110.03327 * 238.55253 * 2 1 3 28 28 H 1.09004 * 109.47072 * 300.06889 * 1 2 3 29 29 H 1.08999 * 109.47384 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46902 * 60.06514 * 1 2 3 31 31 H 1.09002 * 110.03085 * 238.56922 * 4 2 1 32 32 H 1.08999 * 110.03471 * 359.94308 * 4 2 1 33 33 H 1.08994 * 110.48540 * 142.28995 * 5 4 2 34 34 H 1.09002 * 110.47847 * 264.92718 * 5 4 2 35 35 H 1.08997 * 109.47870 * 208.74209 * 9 8 6 36 36 H 1.09002 * 109.47291 * 328.74269 * 9 8 6 37 37 H 1.09010 * 109.47372 * 186.29816 * 10 9 8 38 38 H 1.08999 * 109.47494 * 306.29362 * 10 9 8 39 39 H 0.96698 * 114.00363 * 179.97438 * 11 10 9 40 40 H 1.08999 * 109.47431 * 292.88765 * 15 12 8 41 41 H 1.09001 * 109.47326 * 52.88589 * 15 12 8 42 42 H 0.96998 * 120.00283 * 185.01288 * 20 19 17 43 43 H 1.08993 * 117.49838 * 359.97438 * 25 16 15 44 44 H 1.08998 * 117.49912 * 145.01787 * 25 16 15 45 45 H 1.09004 * 117.49738 * 214.98166 * 26 16 15 46 46 H 1.09002 * 117.49392 * 359.97438 * 26 16 15 47 47 H 1.09003 * 110.49013 * 335.78767 * 27 2 1 48 48 H 1.09003 * 110.48522 * 98.42890 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0571 -0.7530 1.2341 5 6 2.8875 -1.9404 0.7045 6 6 3.3136 -1.5012 -0.7183 7 1 4.1730 -0.8320 -0.6748 8 7 3.6078 -2.6670 -1.5552 9 6 2.5343 -3.5927 -1.9253 10 6 1.8735 -3.1157 -3.2202 11 8 2.8087 -3.2133 -4.2962 12 16 5.1538 -2.9386 -2.0829 13 8 4.9893 -3.6877 -3.2792 14 8 5.7491 -1.6485 -2.1024 15 6 5.9008 -3.9648 -0.7870 16 6 7.2840 -4.4343 -1.2421 17 6 8.1057 -3.4120 -1.9843 18 1 8.0773 -3.3765 -3.0634 19 6 8.8936 -2.5220 -1.2858 20 7 8.9571 -2.5891 0.0261 21 14 9.8709 -1.2207 -2.2027 22 1 8.9416 -0.3522 -2.9691 23 1 10.6314 -0.3956 -1.2299 24 1 10.8173 -1.8799 -3.1382 25 6 7.4306 -5.8985 -1.6613 26 6 8.0291 -5.4181 -0.3377 27 6 2.0585 -0.7561 -1.2364 28 1 -0.3633 0.5149 0.8894 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5128 -0.8906 31 1 2.6867 -0.0945 1.8326 32 1 1.2229 -1.1176 1.8335 33 1 3.7636 -2.1031 1.3321 34 1 2.2771 -2.8423 0.6586 35 1 2.9494 -4.5894 -2.0749 36 1 1.7912 -3.6245 -1.1285 37 1 1.0052 -3.7385 -3.4358 38 1 1.5574 -2.0788 -3.1063 39 1 2.4569 -2.9271 -5.1503 40 1 5.9983 -3.3806 0.1280 41 1 5.2667 -4.8312 -0.5990 42 1 9.4526 -1.9192 0.5227 43 1 6.5417 -6.5273 -1.6125 44 1 8.1213 -6.1225 -2.4741 45 1 9.1137 -5.3260 -0.2797 46 1 7.5340 -5.7305 0.5817 47 1 1.3143 -1.4668 -1.5959 48 1 2.3298 -0.0546 -2.0254 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452004978.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:50 Heat of formation + Delta-G solvation = -102.284309 kcal Electronic energy + Delta-G solvation = -29167.571981 eV Core-core repulsion = 25350.290118 eV Total energy + Delta-G solvation = -3817.281863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.13932 -36.81048 -36.62817 -35.78900 -34.70261 -34.45154 -31.96751 -30.76288 -28.77769 -28.21176 -27.80944 -25.38553 -24.63585 -22.52502 -21.09601 -20.32984 -19.82511 -19.27875 -18.16131 -17.46366 -16.76895 -16.26616 -15.77421 -15.65530 -14.99728 -14.69259 -14.32596 -14.19615 -13.79249 -13.61399 -13.55389 -13.39819 -13.04301 -12.91770 -12.54725 -12.17701 -12.03368 -11.87406 -11.81227 -11.70614 -11.07498 -10.98588 -10.97991 -10.91121 -10.84509 -10.74574 -10.69381 -10.54838 -10.50828 -10.44429 -10.26108 -10.21895 -9.95157 -9.59742 -9.54444 -8.98062 -8.61371 -8.41054 -7.98149 -6.08698 -4.23965 1.33169 3.40008 3.41540 3.52995 3.56673 4.44819 4.47361 4.56158 4.61961 4.73179 4.98943 5.05293 5.18115 5.20883 5.22984 5.25162 5.28710 5.34852 5.42356 5.44515 5.49890 5.55389 5.60743 5.62746 5.73950 5.80203 5.85326 5.87948 5.90467 6.03876 6.05830 6.10531 6.17554 6.26701 6.38415 6.38901 6.44301 6.61647 6.71037 6.78670 7.03252 7.11370 7.28153 7.52389 7.84486 7.96387 8.26662 8.85080 9.53079 10.98599 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013526 B = 0.004925 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.557502 B = 5684.455701 C = 6243.868703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.118 4.118 5 C -0.141 4.141 6 C 0.140 3.860 7 H 0.112 0.888 8 N -1.000 6.000 9 C 0.127 3.873 10 C 0.045 3.955 11 O -0.535 6.535 12 S 2.622 3.378 13 O -0.937 6.937 14 O -0.948 6.948 15 C -0.568 4.568 16 C 0.049 3.951 17 C -0.537 4.537 18 H 0.068 0.932 19 C 0.096 3.904 20 N -0.870 5.870 21 Si 0.886 3.114 22 H -0.264 1.264 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.205 4.205 26 C -0.139 4.139 27 C -0.130 4.130 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.052 0.948 39 H 0.365 0.635 40 H 0.119 0.881 41 H 0.092 0.908 42 H 0.264 0.736 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.062 0.938 47 H 0.077 0.923 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.320 1.566 1.621 18.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.091 0.909 4 C -0.156 4.156 5 C -0.181 4.181 6 C 0.034 3.966 7 H 0.129 0.871 8 N -0.833 5.833 9 C 0.001 3.999 10 C -0.035 4.035 11 O -0.338 6.338 12 S 2.719 3.281 13 O -0.928 6.928 14 O -0.939 6.939 15 C -0.699 4.699 16 C 0.047 3.953 17 C -0.575 4.575 18 H 0.086 0.914 19 C -0.111 4.111 20 N -0.505 5.505 21 Si 0.713 3.287 22 H -0.188 1.188 23 H -0.210 1.210 24 H -0.200 1.200 25 C -0.242 4.242 26 C -0.178 4.178 27 C -0.169 4.169 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.210 0.790 40 H 0.137 0.863 41 H 0.111 0.889 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.081 0.919 47 H 0.096 0.904 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.451 1.716 1.465 17.596 hybrid contribution -0.017 0.558 0.061 0.562 sum -17.468 2.274 1.526 17.681 Atomic orbital electron populations 1.21869 0.95160 1.01555 1.01342 1.21723 0.95473 0.99640 0.94941 0.90890 1.22163 0.99305 0.97018 0.97134 1.22808 1.00217 0.98317 0.96733 1.21880 0.99036 0.86871 0.88839 0.87058 1.58143 1.25736 1.33394 1.66060 1.21124 0.91263 0.93118 0.94414 1.22908 0.91686 0.99744 0.89169 1.86998 1.39356 1.89171 1.18271 1.04902 0.71294 0.75830 0.76121 1.93556 1.83914 1.73952 1.41352 1.93494 1.75222 1.38536 1.86620 1.30128 1.08414 1.13146 1.18244 1.18168 0.89427 0.88084 0.99628 1.20572 1.27709 1.16141 0.93043 0.91425 1.24889 0.94783 0.96607 0.94801 1.69986 1.40830 1.33735 1.05926 0.86707 0.80001 0.81995 0.80022 1.18815 1.21035 1.19955 1.23116 1.02138 0.99409 0.99583 1.22486 0.99875 1.04169 0.91257 1.22931 0.97395 0.99176 0.97405 0.92869 0.92736 0.92918 0.91618 0.91724 0.91007 0.91168 0.89825 0.89669 0.93856 0.92972 0.79018 0.86258 0.88929 0.92654 0.91457 0.89805 0.89395 0.91898 0.90437 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.84 37.16 0.33 -0.80 16 2 C -0.10 -0.97 3.50 -89.50 -0.31 -1.28 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.12 -1.18 6.46 -25.61 -0.17 -1.34 16 5 C -0.14 -1.68 6.41 -25.07 -0.16 -1.85 16 6 C 0.14 2.03 3.30 -65.94 -0.22 1.81 16 7 H 0.11 1.87 6.85 -51.93 -0.36 1.52 16 8 N -1.00 -16.23 2.72 -105.20 -0.29 -16.51 16 9 C 0.13 1.68 4.98 -4.04 -0.02 1.66 16 10 C 0.04 0.55 6.97 37.16 0.26 0.81 16 11 O -0.54 -8.42 11.01 -57.82 -0.64 -9.05 16 12 S 2.62 57.67 4.50 -107.50 -0.48 57.19 16 13 O -0.94 -22.45 14.53 -66.57 -0.97 -23.42 16 14 O -0.95 -24.32 15.74 -57.54 -0.91 -25.22 16 15 C -0.57 -12.49 6.29 37.16 0.23 -12.26 16 16 C 0.05 1.24 1.74 -155.65 -0.27 0.97 16 17 C -0.54 -15.28 6.94 -34.44 -0.24 -15.52 16 18 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 19 C 0.10 2.72 5.42 -17.82 -0.10 2.62 16 20 N -0.87 -24.75 12.64 55.43 0.70 -24.05 16 21 Si 0.89 22.47 29.54 -169.99 -5.02 17.45 16 22 H -0.26 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 C -0.21 -4.67 9.88 -26.73 -0.26 -4.94 16 26 C -0.14 -3.31 9.15 -26.73 -0.24 -3.56 16 27 C -0.13 -1.51 4.92 -25.08 -0.12 -1.64 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.74 6.76 -51.93 -0.35 0.39 16 35 H 0.08 1.16 7.74 -51.93 -0.40 0.75 16 36 H 0.09 0.84 6.65 -51.93 -0.35 0.49 16 37 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 38 H 0.05 0.58 5.30 -51.93 -0.28 0.31 16 39 H 0.37 3.97 9.12 45.56 0.42 4.39 16 40 H 0.12 2.64 8.14 -51.92 -0.42 2.22 16 41 H 0.09 1.72 7.95 -51.92 -0.41 1.31 16 42 H 0.26 7.16 8.32 -40.82 -0.34 6.82 16 43 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 44 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 45 H 0.09 2.23 8.14 -51.93 -0.42 1.80 16 46 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 47 H 0.08 0.80 4.69 -51.93 -0.24 0.55 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 381.42 15.07 5.75 5.75 Total: -1.00 -34.97 381.42 -10.55 -45.52 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.41 Total: 7.65 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: -1.29 Total: -35.31 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.41 Total: -40.56 kcal Atomic # 8 Polarization: -55.18 SS G_CDS: -2.51 Total: -57.69 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 16 Polarization: 57.67 SS G_CDS: -0.48 Total: 57.19 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.97 -10.55 -45.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452004978.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.760 kcal (2) G-P(sol) polarization free energy of solvation -34.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds