Wall clock time and date at job start Tue Mar 31 2020 17:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.01638 * 2 1 4 4 C 1.53880 * 110.02896 * 121.39036 * 2 1 3 5 5 C 1.54265 * 106.59955 * 119.28783 * 4 2 1 6 6 C 1.54889 * 104.19613 * 23.60296 * 5 4 2 7 7 H 1.09005 * 110.74967 * 80.56159 * 6 5 4 8 8 N 1.46494 * 110.75573 * 203.74531 * 6 5 4 9 9 C 1.46497 * 120.00327 * 66.26479 * 8 6 5 10 10 C 1.53001 * 109.46888 * 88.73915 * 9 8 6 11 11 O 1.42898 * 109.47208 * 66.29916 * 10 9 8 12 12 S 1.65603 * 119.99891 * 246.26878 * 8 6 5 13 13 O 1.42106 * 104.27657 * 206.07010 * 12 8 6 14 14 O 1.42096 * 104.27682 * 333.92677 * 12 8 6 15 15 C 1.81395 * 104.45157 * 90.00092 * 12 8 6 16 16 C 1.53000 * 109.47525 * 172.88942 * 15 12 8 17 17 C 1.50705 * 115.54950 * 39.65147 * 16 15 12 18 18 H 1.08000 * 120.00328 * 266.50231 * 17 16 15 19 19 C 1.37870 * 119.99510 * 86.49705 * 17 16 15 20 20 N 1.31518 * 120.00493 * 1.89962 * 19 17 16 21 21 Si 1.86796 * 120.00037 * 181.89747 * 19 17 16 22 22 H 1.48500 * 109.46966 * 60.00232 * 21 19 17 23 23 H 1.48503 * 109.47513 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47206 * 300.00292 * 21 19 17 25 25 C 1.53008 * 117.49725 * 253.95398 * 16 15 12 26 26 C 1.52999 * 117.50249 * 185.33192 * 16 15 12 27 27 C 1.54259 * 110.03327 * 238.55253 * 2 1 3 28 28 H 1.09004 * 109.47072 * 300.06889 * 1 2 3 29 29 H 1.08999 * 109.47384 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46902 * 60.06514 * 1 2 3 31 31 H 1.09002 * 110.03085 * 238.56922 * 4 2 1 32 32 H 1.08999 * 110.03471 * 359.94308 * 4 2 1 33 33 H 1.08994 * 110.48540 * 142.28995 * 5 4 2 34 34 H 1.09002 * 110.47847 * 264.92718 * 5 4 2 35 35 H 1.08997 * 109.47870 * 208.74209 * 9 8 6 36 36 H 1.09002 * 109.47291 * 328.74269 * 9 8 6 37 37 H 1.09010 * 109.47372 * 186.29816 * 10 9 8 38 38 H 1.08999 * 109.47494 * 306.29362 * 10 9 8 39 39 H 0.96698 * 114.00363 * 179.97438 * 11 10 9 40 40 H 1.08999 * 109.47431 * 292.88765 * 15 12 8 41 41 H 1.09001 * 109.47326 * 52.88589 * 15 12 8 42 42 H 0.96998 * 120.00283 * 185.01288 * 20 19 17 43 43 H 1.08993 * 117.49838 * 359.97438 * 25 16 15 44 44 H 1.08998 * 117.49912 * 145.01787 * 25 16 15 45 45 H 1.09004 * 117.49738 * 214.98166 * 26 16 15 46 46 H 1.09002 * 117.49392 * 359.97438 * 26 16 15 47 47 H 1.09003 * 110.49013 * 335.78767 * 27 2 1 48 48 H 1.09003 * 110.48522 * 98.42890 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0571 -0.7530 1.2341 5 6 2.8875 -1.9404 0.7045 6 6 3.3136 -1.5012 -0.7183 7 1 4.1730 -0.8320 -0.6748 8 7 3.6078 -2.6670 -1.5552 9 6 2.5343 -3.5927 -1.9253 10 6 1.8735 -3.1157 -3.2202 11 8 2.8087 -3.2133 -4.2962 12 16 5.1538 -2.9386 -2.0829 13 8 4.9893 -3.6877 -3.2792 14 8 5.7491 -1.6485 -2.1024 15 6 5.9008 -3.9648 -0.7870 16 6 7.2840 -4.4343 -1.2421 17 6 8.1057 -3.4120 -1.9843 18 1 8.0773 -3.3765 -3.0634 19 6 8.8936 -2.5220 -1.2858 20 7 8.9571 -2.5891 0.0261 21 14 9.8709 -1.2207 -2.2027 22 1 8.9416 -0.3522 -2.9691 23 1 10.6314 -0.3956 -1.2299 24 1 10.8173 -1.8799 -3.1382 25 6 7.4306 -5.8985 -1.6613 26 6 8.0291 -5.4181 -0.3377 27 6 2.0585 -0.7561 -1.2364 28 1 -0.3633 0.5149 0.8894 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5128 -0.8906 31 1 2.6867 -0.0945 1.8326 32 1 1.2229 -1.1176 1.8335 33 1 3.7636 -2.1031 1.3321 34 1 2.2771 -2.8423 0.6586 35 1 2.9494 -4.5894 -2.0749 36 1 1.7912 -3.6245 -1.1285 37 1 1.0052 -3.7385 -3.4358 38 1 1.5574 -2.0788 -3.1063 39 1 2.4569 -2.9271 -5.1503 40 1 5.9983 -3.3806 0.1280 41 1 5.2667 -4.8312 -0.5990 42 1 9.4526 -1.9192 0.5227 43 1 6.5417 -6.5273 -1.6125 44 1 8.1213 -6.1225 -2.4741 45 1 9.1137 -5.3260 -0.2797 46 1 7.5340 -5.7305 0.5817 47 1 1.3143 -1.4668 -1.5959 48 1 2.3298 -0.0546 -2.0254 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452004978.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:49 Heat of formation + Delta-G solvation = -126.575671 kcal Electronic energy + Delta-G solvation = -29168.625333 eV Core-core repulsion = 25350.290118 eV Total energy + Delta-G solvation = -3818.335215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.12795 -38.53768 -38.00614 -37.41665 -36.46241 -35.59699 -34.10972 -31.63033 -29.89401 -29.75407 -28.91664 -27.49521 -25.45250 -23.55259 -22.95270 -21.67745 -21.12611 -20.56244 -19.51558 -18.83588 -18.23334 -18.07033 -16.97155 -16.87537 -16.64851 -16.53902 -15.86273 -15.54537 -15.29026 -14.94659 -14.62417 -14.60523 -14.32507 -13.97067 -13.78088 -13.72685 -13.31675 -13.23046 -13.08774 -13.02852 -12.87621 -12.75070 -12.61710 -12.44988 -12.42919 -12.12957 -12.07306 -11.90266 -11.82310 -11.80295 -11.55896 -11.48439 -11.39862 -11.16550 -10.96847 -10.55802 -10.48020 -10.04844 -9.67416 -8.24992 -6.43124 -0.33861 1.31744 1.36848 1.45248 2.13142 2.37810 3.05222 3.26120 3.33619 3.47167 3.62582 3.68048 3.75725 3.91530 4.00727 4.23546 4.25367 4.30768 4.38384 4.47083 4.49649 4.57219 4.58479 4.60493 4.63761 4.65014 4.77071 4.80009 4.83281 4.84595 4.96006 4.97419 5.04682 5.15538 5.18254 5.20294 5.24188 5.38611 5.39702 5.41668 5.53132 5.61846 5.62378 5.65400 5.90037 6.19171 6.66443 7.11726 7.34405 8.81873 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013526 B = 0.004925 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.557502 B = 5684.455701 C = 6243.868703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 H 0.066 0.934 4 C -0.114 4.114 5 C -0.138 4.138 6 C 0.128 3.872 7 H 0.075 0.925 8 N -0.990 5.990 9 C 0.113 3.887 10 C 0.038 3.962 11 O -0.576 6.576 12 S 2.630 3.370 13 O -0.964 6.964 14 O -0.999 6.999 15 C -0.564 4.564 16 C 0.012 3.988 17 C -0.552 4.552 18 H 0.045 0.955 19 C 0.058 3.942 20 N -0.886 5.886 21 Si 0.921 3.079 22 H -0.280 1.280 23 H -0.267 1.267 24 H -0.262 1.262 25 C -0.190 4.190 26 C -0.136 4.136 27 C -0.125 4.125 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.128 0.872 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.381 0.619 40 H 0.111 0.889 41 H 0.129 0.871 42 H 0.266 0.734 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.084 0.916 47 H 0.098 0.902 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.302 0.760 2.632 21.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.116 4.116 3 H 0.085 0.915 4 C -0.152 4.152 5 C -0.177 4.177 6 C 0.021 3.979 7 H 0.093 0.907 8 N -0.826 5.826 9 C -0.012 4.012 10 C -0.041 4.041 11 O -0.382 6.382 12 S 2.727 3.273 13 O -0.954 6.954 14 O -0.989 6.989 15 C -0.695 4.695 16 C 0.010 3.990 17 C -0.590 4.590 18 H 0.063 0.937 19 C -0.147 4.147 20 N -0.522 5.522 21 Si 0.746 3.254 22 H -0.206 1.206 23 H -0.192 1.192 24 H -0.187 1.187 25 C -0.227 4.227 26 C -0.174 4.174 27 C -0.163 4.163 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.146 0.854 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.228 0.772 40 H 0.130 0.870 41 H 0.147 0.853 42 H 0.075 0.925 43 H 0.118 0.882 44 H 0.097 0.903 45 H 0.083 0.917 46 H 0.102 0.898 47 H 0.117 0.883 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.417 0.906 2.463 20.585 hybrid contribution 0.844 0.794 -0.282 1.193 sum -19.573 1.700 2.180 19.767 Atomic orbital electron populations 1.21837 0.93087 1.02500 1.02046 1.21713 0.97102 0.98968 0.93776 0.91501 1.22168 0.99646 0.96140 0.97291 1.22804 1.00359 1.00070 0.94457 1.22052 0.99033 0.86155 0.90615 0.90723 1.57626 1.24253 1.34456 1.66281 1.21601 0.91092 0.91987 0.96526 1.23114 0.92016 1.01155 0.87788 1.86940 1.41637 1.89575 1.20029 1.04252 0.72364 0.74693 0.75971 1.93513 1.84750 1.74193 1.42910 1.93425 1.77310 1.40805 1.87374 1.30011 1.07334 1.14507 1.17629 1.18328 0.90899 0.88716 1.01060 1.20709 1.28506 1.17460 0.92281 0.93720 1.25417 0.95670 0.98008 0.95572 1.70016 1.41499 1.34291 1.06359 0.86175 0.79154 0.80420 0.79702 1.20576 1.19164 1.18702 1.23187 1.02937 0.97937 0.98613 1.22407 0.98641 1.03797 0.92602 1.22927 0.96343 0.99164 0.97910 0.91908 0.91624 0.92583 0.92125 0.89393 0.92408 0.88938 0.90416 0.85385 0.90225 0.92000 0.77176 0.87011 0.85286 0.92450 0.88179 0.90347 0.91690 0.89755 0.88338 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.84 71.98 0.64 -1.04 16 2 C -0.10 -1.67 3.50 -10.07 -0.04 -1.71 16 3 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.11 -2.00 6.46 31.32 0.20 -1.79 16 5 C -0.14 -3.00 6.41 31.67 0.20 -2.80 16 6 C 0.13 3.63 3.30 46.28 0.15 3.78 16 7 H 0.07 2.66 6.85 -2.38 -0.02 2.65 16 8 N -0.99 -31.24 2.72 -486.75 -1.33 -32.57 16 9 C 0.11 2.65 4.98 86.38 0.43 3.08 16 10 C 0.04 0.83 6.97 71.98 0.50 1.33 16 11 O -0.58 -17.61 11.01 -127.38 -1.40 -19.01 16 12 S 2.63 117.70 4.50 -56.49 -0.25 117.44 16 13 O -0.96 -46.81 14.53 -119.02 -1.73 -48.54 16 14 O -1.00 -53.79 15.74 -127.65 -2.01 -55.80 16 15 C -0.56 -24.60 6.29 71.98 0.45 -24.14 16 16 C 0.01 0.60 1.74 -52.92 -0.09 0.51 16 17 C -0.55 -32.32 6.94 25.60 0.18 -32.14 16 18 H 0.04 2.74 7.81 -2.91 -0.02 2.72 16 19 C 0.06 3.36 5.42 84.65 0.46 3.82 16 20 N -0.89 -51.32 12.64 21.45 0.27 -51.05 16 21 Si 0.92 46.91 29.54 68.60 2.03 48.94 16 22 H -0.28 -14.93 7.11 99.48 0.71 -14.22 16 23 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 25 C -0.19 -8.42 9.88 30.60 0.30 -8.12 16 26 C -0.14 -6.39 9.15 30.59 0.28 -6.11 16 27 C -0.12 -2.68 4.92 31.67 0.16 -2.53 16 28 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 1.16 7.67 -2.39 -0.02 1.14 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.09 1.59 6.76 -2.39 -0.02 1.58 16 35 H 0.08 1.95 7.74 -2.39 -0.02 1.93 16 36 H 0.13 1.89 6.65 -2.39 -0.02 1.87 16 37 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.06 1.20 5.30 -2.39 -0.01 1.19 16 39 H 0.38 8.05 9.12 -74.06 -0.68 7.38 16 40 H 0.11 5.00 8.14 -2.39 -0.02 4.98 16 41 H 0.13 4.52 7.95 -2.39 -0.02 4.50 16 42 H 0.27 14.66 8.32 -92.71 -0.77 13.89 16 43 H 0.10 3.75 8.08 -2.39 -0.02 3.73 16 44 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 45 H 0.06 3.32 8.14 -2.39 -0.02 3.30 16 46 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 47 H 0.10 1.68 4.69 -2.39 -0.01 1.67 16 48 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -78.70 381.42 -0.33 -79.02 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.27 Total: 29.42 kcal Atomic # 6 Polarization: -71.68 SS G_CDS: 3.83 Total: -67.86 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -1.05 Total: -83.62 kcal Atomic # 8 Polarization: -118.21 SS G_CDS: -5.14 Total: -123.35 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Atomic # 16 Polarization: 117.70 SS G_CDS: -0.25 Total: 117.44 kcal Total: -78.70 -0.33 -79.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452004978.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.553 kcal (2) G-P(sol) polarization free energy of solvation -78.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds