Wall clock time and date at job start Tue Mar 31 2020 17:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.01961 * 2 1 4 4 C 1.54270 * 110.03421 * 121.43944 * 2 1 3 5 5 C 1.54890 * 104.19703 * 142.89473 * 4 2 1 6 6 C 1.54894 * 102.74610 * 322.05739 * 5 4 2 7 7 H 1.08996 * 110.60114 * 279.20825 * 6 5 4 8 8 N 1.46505 * 110.48548 * 156.61960 * 6 5 4 9 9 C 1.46504 * 119.99648 * 311.54496 * 8 6 5 10 10 C 1.53000 * 109.47149 * 89.03345 * 9 8 6 11 11 O 1.42902 * 109.47407 * 63.91642 * 10 9 8 12 12 S 1.65595 * 120.00024 * 131.53708 * 8 6 5 13 13 O 1.42094 * 104.27801 * 333.93422 * 12 8 6 14 14 O 1.42097 * 104.28010 * 206.07100 * 12 8 6 15 15 C 1.81401 * 104.44504 * 90.00422 * 12 8 6 16 16 C 1.53006 * 109.47254 * 172.77562 * 15 12 8 17 17 C 1.50706 * 115.55822 * 39.62982 * 16 15 12 18 18 H 1.07989 * 120.00475 * 265.61341 * 17 16 15 19 19 C 1.37875 * 119.99311 * 85.61785 * 17 16 15 20 20 N 1.31510 * 120.00728 * 2.95318 * 19 17 16 21 21 Si 1.86809 * 119.99584 * 182.95869 * 19 17 16 22 22 H 1.48500 * 109.47181 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47323 * 119.99937 * 21 19 17 24 24 H 1.48500 * 109.46852 * 239.99445 * 21 19 17 25 25 C 1.52997 * 117.50084 * 185.32365 * 16 15 12 26 26 C 1.53002 * 60.02928 * 107.50195 * 25 16 15 27 27 C 1.53875 * 110.03316 * 238.60875 * 2 1 3 28 28 H 1.08996 * 109.46961 * 181.39314 * 1 2 3 29 29 H 1.09000 * 109.47052 * 301.38870 * 1 2 3 30 30 H 1.09000 * 109.47289 * 61.39439 * 1 2 3 31 31 H 1.08993 * 110.48853 * 261.57304 * 4 2 1 32 32 H 1.09008 * 110.48454 * 24.08617 * 4 2 1 33 33 H 1.08997 * 110.75611 * 203.74754 * 5 4 2 34 34 H 1.08996 * 110.75442 * 80.36974 * 5 4 2 35 35 H 1.09008 * 109.46442 * 209.03083 * 9 8 6 36 36 H 1.08992 * 109.47268 * 329.02850 * 9 8 6 37 37 H 1.09002 * 109.46704 * 183.91587 * 10 9 8 38 38 H 1.08992 * 109.47161 * 303.91528 * 10 9 8 39 39 H 0.96696 * 114.00024 * 179.97438 * 11 10 9 40 40 H 1.08999 * 109.47692 * 52.77485 * 15 12 8 41 41 H 1.08999 * 109.47220 * 292.76900 * 15 12 8 42 42 H 0.96995 * 120.00827 * 185.01464 * 20 19 17 43 43 H 1.08994 * 117.49987 * 0.02562 * 25 16 15 44 44 H 1.08999 * 117.49703 * 214.99501 * 25 16 15 45 45 H 1.09003 * 117.50015 * 107.48464 * 26 25 16 46 46 H 1.09000 * 117.49764 * 252.47230 * 26 25 16 47 47 H 1.08997 * 110.03720 * 121.43315 * 27 2 1 48 48 H 1.08997 * 110.03150 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7560 1.2366 5 6 3.3137 -1.5010 0.7185 6 6 2.8874 -1.9404 -0.7043 7 1 2.2778 -2.8428 -0.6605 8 7 4.0651 -2.1592 -1.5478 9 6 5.1274 -1.1515 -1.5981 10 6 6.1528 -1.4361 -0.4988 11 8 6.7830 -2.6940 -0.7491 12 16 4.1957 -3.5455 -2.4440 13 8 3.4117 -4.4957 -1.7359 14 8 5.5956 -3.7267 -2.6074 15 6 3.4178 -3.1338 -4.0302 16 6 3.6338 -4.2825 -5.0176 17 6 3.5156 -5.6687 -4.4383 18 1 4.3989 -6.1897 -4.1000 19 6 2.2796 -6.2718 -4.3404 20 7 1.2114 -5.6616 -4.8054 21 14 2.1222 -7.9556 -3.5470 22 1 3.4617 -8.4236 -3.1088 23 1 1.2195 -7.8665 -2.3712 24 1 1.5602 -8.9157 -4.5307 25 6 3.1587 -4.0755 -6.4571 26 6 4.6550 -4.0695 -6.1377 27 6 2.0571 -0.7530 -1.2340 28 1 -0.3633 -1.0273 0.0250 29 1 -0.3633 0.5353 0.8773 30 1 -0.3634 0.4920 -0.9022 31 1 2.3297 -0.0545 2.0254 32 1 1.3133 -1.4651 1.5975 33 1 3.5325 -2.3684 1.3413 34 1 4.1710 -0.8293 0.6748 35 1 5.6178 -1.1890 -2.5709 36 1 4.6969 -0.1618 -1.4461 37 1 6.9055 -0.6477 -0.4913 38 1 5.6500 -1.4676 0.4677 39 1 7.4469 -2.9393 -0.0903 40 1 3.8650 -2.2232 -4.4288 41 1 2.3492 -2.9788 -3.8814 42 1 0.3334 -6.0516 -4.6720 43 1 2.6926 -3.1208 -6.7009 44 1 2.7603 -4.9419 -6.9851 45 1 5.2409 -4.9320 -6.4554 46 1 5.1730 -3.1111 -6.1718 47 1 2.6867 -0.0946 -1.8325 48 1 1.2229 -1.1188 -1.8327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452004980.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:54 Heat of formation + Delta-G solvation = -101.700209 kcal Electronic energy + Delta-G solvation = -29210.473708 eV Core-core repulsion = 25393.217173 eV Total energy + Delta-G solvation = -3817.256534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.13381 -36.82195 -36.62449 -35.78537 -34.69264 -34.42908 -31.97381 -30.54270 -29.37914 -28.05882 -27.35245 -25.40796 -24.84307 -22.31327 -21.09655 -20.47035 -19.84122 -19.23100 -18.22962 -17.49381 -16.74428 -16.26853 -15.96055 -15.20181 -14.85190 -14.69272 -14.46827 -14.33171 -13.81810 -13.64064 -13.56466 -13.28342 -13.15107 -12.91055 -12.38187 -12.11394 -12.05347 -11.94434 -11.72534 -11.68190 -11.09780 -10.94075 -10.90832 -10.88578 -10.82661 -10.75977 -10.74319 -10.57488 -10.49353 -10.42510 -10.29258 -10.22835 -9.95771 -9.57778 -9.52350 -8.98347 -8.61653 -8.42240 -7.98029 -6.09482 -4.24276 1.33653 3.36610 3.45398 3.52144 3.57153 4.45819 4.46977 4.56844 4.61363 4.76507 5.00661 5.03325 5.19276 5.20242 5.22011 5.23790 5.36346 5.42630 5.44298 5.45098 5.51341 5.55770 5.58836 5.64214 5.75835 5.80409 5.87605 5.90809 5.97151 6.02432 6.09401 6.11318 6.18622 6.26096 6.38566 6.42084 6.43974 6.61604 6.71109 6.78517 7.03227 7.12089 7.27836 7.52127 7.84575 7.96878 8.26597 8.85560 9.52840 10.97984 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011959 B = 0.005292 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.796401 B = 5289.245834 C = 6009.240299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.069 0.931 4 C -0.120 4.120 5 C -0.135 4.135 6 C 0.142 3.858 7 H 0.109 0.891 8 N -1.001 6.001 9 C 0.127 3.873 10 C 0.045 3.955 11 O -0.535 6.535 12 S 2.623 3.377 13 O -0.950 6.950 14 O -0.937 6.937 15 C -0.568 4.568 16 C 0.048 3.952 17 C -0.536 4.536 18 H 0.069 0.931 19 C 0.095 3.905 20 N -0.869 5.869 21 Si 0.891 3.109 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.284 1.284 25 C -0.139 4.139 26 C -0.205 4.205 27 C -0.140 4.140 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.052 0.948 39 H 0.365 0.635 40 H 0.092 0.908 41 H 0.119 0.881 42 H 0.263 0.737 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.602 14.646 10.202 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.087 0.913 4 C -0.158 4.158 5 C -0.173 4.173 6 C 0.035 3.965 7 H 0.127 0.873 8 N -0.834 5.834 9 C 0.001 3.999 10 C -0.035 4.035 11 O -0.338 6.338 12 S 2.720 3.280 13 O -0.940 6.940 14 O -0.927 6.927 15 C -0.699 4.699 16 C 0.046 3.954 17 C -0.573 4.573 18 H 0.087 0.913 19 C -0.112 4.112 20 N -0.504 5.504 21 Si 0.718 3.282 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.210 1.210 25 C -0.178 4.178 26 C -0.242 4.242 27 C -0.179 4.179 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.210 0.790 40 H 0.111 0.889 41 H 0.137 0.863 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.106 0.894 45 H 0.102 0.898 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.408 13.823 9.897 17.170 hybrid contribution -0.319 -0.121 0.420 0.541 sum 2.088 13.701 10.317 17.278 Atomic orbital electron populations 1.21912 0.95069 1.02129 1.01303 1.21677 0.95675 0.99060 0.94790 0.91264 1.22429 0.97452 0.98958 0.97007 1.22992 0.97930 1.00320 0.96108 1.21743 0.86086 0.99163 0.89512 0.87267 1.58175 1.26638 1.39168 1.59423 1.21123 0.86999 0.92262 0.99514 1.22901 0.95001 0.86993 0.98593 1.87003 1.57714 1.36413 1.52628 1.04860 0.75020 0.72308 0.75855 1.93485 1.72653 1.57198 1.70659 1.93551 1.29344 1.83401 1.86445 1.30129 1.12519 1.06253 1.21042 1.18195 0.99112 0.91773 0.86280 1.20661 0.94161 0.98631 1.43897 0.91292 1.24901 0.95633 0.97718 0.92910 1.70003 0.98262 1.39653 1.42488 0.86530 0.79003 0.83477 0.79213 1.19138 1.20207 1.21046 1.22490 0.93913 1.00262 1.01162 1.23119 0.92725 1.00360 1.08029 1.22739 1.00033 0.97509 0.97665 0.92255 0.93005 0.92730 0.91817 0.91227 0.91149 0.90474 0.89913 0.89653 0.93855 0.93001 0.79022 0.88946 0.86270 0.92758 0.91908 0.89401 0.89808 0.91457 0.91112 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.85 37.16 0.33 -1.05 16 2 C -0.09 -0.91 3.50 -89.50 -0.31 -1.23 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.12 -1.17 6.36 -25.07 -0.16 -1.33 16 5 C -0.13 -1.56 5.52 -24.74 -0.14 -1.70 16 6 C 0.14 2.05 3.26 -66.26 -0.22 1.83 16 7 H 0.11 1.85 6.83 -51.93 -0.35 1.49 16 8 N -1.00 -16.22 2.67 -105.54 -0.28 -16.50 16 9 C 0.13 1.67 4.90 -4.04 -0.02 1.65 16 10 C 0.04 0.55 7.01 37.16 0.26 0.81 16 11 O -0.53 -8.41 10.89 -58.03 -0.63 -9.05 16 12 S 2.62 57.69 4.47 -107.50 -0.48 57.21 16 13 O -0.95 -24.29 15.75 -57.54 -0.91 -25.20 16 14 O -0.94 -22.44 14.48 -66.64 -0.96 -23.41 16 15 C -0.57 -12.50 6.29 37.16 0.23 -12.27 16 16 C 0.05 1.23 1.73 -155.62 -0.27 0.96 16 17 C -0.54 -15.26 6.94 -34.44 -0.24 -15.50 16 18 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 19 C 0.09 2.70 5.43 -17.82 -0.10 2.60 16 20 N -0.87 -24.73 12.66 55.43 0.70 -24.03 16 21 Si 0.89 22.68 29.54 -169.99 -5.02 17.66 16 22 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 C -0.14 -3.32 9.17 -26.73 -0.25 -3.57 16 26 C -0.21 -4.67 9.88 -26.70 -0.26 -4.93 16 27 C -0.14 -1.68 6.01 -25.61 -0.15 -1.84 16 28 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.69 7.84 -51.92 -0.41 0.29 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.79 4.96 -51.93 -0.26 0.53 16 35 H 0.08 1.14 7.76 -51.92 -0.40 0.74 16 36 H 0.09 0.83 6.85 -51.93 -0.36 0.48 16 37 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 0.57 5.25 -51.93 -0.27 0.30 16 39 H 0.36 3.98 9.12 45.56 0.42 4.39 16 40 H 0.09 1.72 7.95 -51.92 -0.41 1.30 16 41 H 0.12 2.65 8.14 -51.92 -0.42 2.23 16 42 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 43 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.09 2.22 8.14 -51.93 -0.42 1.80 16 45 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 46 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 47 H 0.07 0.78 6.80 -51.93 -0.35 0.43 16 48 H 0.07 0.93 7.67 -51.93 -0.40 0.53 16 LS Contribution 381.40 15.07 5.75 5.75 Total: -1.00 -34.95 381.40 -10.54 -45.49 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -7.41 Total: 7.64 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: -1.29 Total: -35.56 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.42 Total: -40.53 kcal Atomic # 8 Polarization: -55.15 SS G_CDS: -2.50 Total: -57.65 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Atomic # 16 Polarization: 57.69 SS G_CDS: -0.48 Total: 57.21 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.95 -10.54 -45.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452004980.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.212 kcal (2) G-P(sol) polarization free energy of solvation -34.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds