Wall clock time and date at job start Tue Mar 31 2020 17:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.01961 * 2 1 4 4 C 1.54270 * 110.03421 * 121.43944 * 2 1 3 5 5 C 1.54890 * 104.19703 * 142.89473 * 4 2 1 6 6 C 1.54894 * 102.74610 * 322.05739 * 5 4 2 7 7 H 1.08996 * 110.60114 * 279.20825 * 6 5 4 8 8 N 1.46505 * 110.48548 * 156.61960 * 6 5 4 9 9 C 1.46504 * 119.99648 * 311.54496 * 8 6 5 10 10 C 1.53000 * 109.47149 * 89.03345 * 9 8 6 11 11 O 1.42902 * 109.47407 * 63.91642 * 10 9 8 12 12 S 1.65595 * 120.00024 * 131.53708 * 8 6 5 13 13 O 1.42094 * 104.27801 * 333.93422 * 12 8 6 14 14 O 1.42097 * 104.28010 * 206.07100 * 12 8 6 15 15 C 1.81401 * 104.44504 * 90.00422 * 12 8 6 16 16 C 1.53006 * 109.47254 * 172.77562 * 15 12 8 17 17 C 1.50706 * 115.55822 * 39.62982 * 16 15 12 18 18 H 1.07989 * 120.00475 * 265.61341 * 17 16 15 19 19 C 1.37875 * 119.99311 * 85.61785 * 17 16 15 20 20 N 1.31510 * 120.00728 * 2.95318 * 19 17 16 21 21 Si 1.86809 * 119.99584 * 182.95869 * 19 17 16 22 22 H 1.48500 * 109.47181 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47323 * 119.99937 * 21 19 17 24 24 H 1.48500 * 109.46852 * 239.99445 * 21 19 17 25 25 C 1.52997 * 117.50084 * 185.32365 * 16 15 12 26 26 C 1.53002 * 60.02928 * 107.50195 * 25 16 15 27 27 C 1.53875 * 110.03316 * 238.60875 * 2 1 3 28 28 H 1.08996 * 109.46961 * 181.39314 * 1 2 3 29 29 H 1.09000 * 109.47052 * 301.38870 * 1 2 3 30 30 H 1.09000 * 109.47289 * 61.39439 * 1 2 3 31 31 H 1.08993 * 110.48853 * 261.57304 * 4 2 1 32 32 H 1.09008 * 110.48454 * 24.08617 * 4 2 1 33 33 H 1.08997 * 110.75611 * 203.74754 * 5 4 2 34 34 H 1.08996 * 110.75442 * 80.36974 * 5 4 2 35 35 H 1.09008 * 109.46442 * 209.03083 * 9 8 6 36 36 H 1.08992 * 109.47268 * 329.02850 * 9 8 6 37 37 H 1.09002 * 109.46704 * 183.91587 * 10 9 8 38 38 H 1.08992 * 109.47161 * 303.91528 * 10 9 8 39 39 H 0.96696 * 114.00024 * 179.97438 * 11 10 9 40 40 H 1.08999 * 109.47692 * 52.77485 * 15 12 8 41 41 H 1.08999 * 109.47220 * 292.76900 * 15 12 8 42 42 H 0.96995 * 120.00827 * 185.01464 * 20 19 17 43 43 H 1.08994 * 117.49987 * 0.02562 * 25 16 15 44 44 H 1.08999 * 117.49703 * 214.99501 * 25 16 15 45 45 H 1.09003 * 117.50015 * 107.48464 * 26 25 16 46 46 H 1.09000 * 117.49764 * 252.47230 * 26 25 16 47 47 H 1.08997 * 110.03720 * 121.43315 * 27 2 1 48 48 H 1.08997 * 110.03150 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7560 1.2366 5 6 3.3137 -1.5010 0.7185 6 6 2.8874 -1.9404 -0.7043 7 1 2.2778 -2.8428 -0.6605 8 7 4.0651 -2.1592 -1.5478 9 6 5.1274 -1.1515 -1.5981 10 6 6.1528 -1.4361 -0.4988 11 8 6.7830 -2.6940 -0.7491 12 16 4.1957 -3.5455 -2.4440 13 8 3.4117 -4.4957 -1.7359 14 8 5.5956 -3.7267 -2.6074 15 6 3.4178 -3.1338 -4.0302 16 6 3.6338 -4.2825 -5.0176 17 6 3.5156 -5.6687 -4.4383 18 1 4.3989 -6.1897 -4.1000 19 6 2.2796 -6.2718 -4.3404 20 7 1.2114 -5.6616 -4.8054 21 14 2.1222 -7.9556 -3.5470 22 1 3.4617 -8.4236 -3.1088 23 1 1.2195 -7.8665 -2.3712 24 1 1.5602 -8.9157 -4.5307 25 6 3.1587 -4.0755 -6.4571 26 6 4.6550 -4.0695 -6.1377 27 6 2.0571 -0.7530 -1.2340 28 1 -0.3633 -1.0273 0.0250 29 1 -0.3633 0.5353 0.8773 30 1 -0.3634 0.4920 -0.9022 31 1 2.3297 -0.0545 2.0254 32 1 1.3133 -1.4651 1.5975 33 1 3.5325 -2.3684 1.3413 34 1 4.1710 -0.8293 0.6748 35 1 5.6178 -1.1890 -2.5709 36 1 4.6969 -0.1618 -1.4461 37 1 6.9055 -0.6477 -0.4913 38 1 5.6500 -1.4676 0.4677 39 1 7.4469 -2.9393 -0.0903 40 1 3.8650 -2.2232 -4.4288 41 1 2.3492 -2.9788 -3.8814 42 1 0.3334 -6.0516 -4.6720 43 1 2.6926 -3.1208 -6.7009 44 1 2.7603 -4.9419 -6.9851 45 1 5.2409 -4.9320 -6.4554 46 1 5.1730 -3.1111 -6.1718 47 1 2.6867 -0.0946 -1.8325 48 1 1.2229 -1.1188 -1.8327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452004980.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:53 Heat of formation + Delta-G solvation = -125.946249 kcal Electronic energy + Delta-G solvation = -29211.525095 eV Core-core repulsion = 25393.217173 eV Total energy + Delta-G solvation = -3818.307921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.12309 -38.53640 -38.00858 -37.41400 -36.45385 -35.57172 -34.12010 -31.42886 -30.39774 -29.82193 -28.37673 -27.50962 -25.72914 -23.34042 -22.95325 -21.61750 -21.30100 -20.55242 -19.52822 -18.88788 -18.24089 -18.05632 -17.10214 -16.87791 -16.59354 -16.15152 -15.81399 -15.61721 -15.31833 -14.98756 -14.89100 -14.48579 -14.22141 -14.00951 -13.87593 -13.75624 -13.33802 -13.22079 -13.06286 -13.03054 -12.89975 -12.70657 -12.59506 -12.47013 -12.38153 -12.18323 -12.07574 -11.83483 -11.80119 -11.66390 -11.59353 -11.51441 -11.44382 -11.21651 -10.98506 -10.53414 -10.48094 -10.05064 -9.67398 -8.26198 -6.43871 -0.33174 1.29675 1.36002 1.44764 2.14175 2.36548 3.04209 3.26452 3.33723 3.48613 3.61829 3.66838 3.79466 3.91854 4.01278 4.22408 4.26130 4.30357 4.40452 4.45256 4.52328 4.57488 4.58651 4.60712 4.61144 4.67186 4.75191 4.81042 4.84446 4.87139 4.96997 5.02333 5.04800 5.07075 5.17833 5.21040 5.24393 5.37004 5.39256 5.40644 5.51742 5.61994 5.63783 5.65290 5.91490 6.18842 6.66291 7.12722 7.33743 8.81087 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011959 B = 0.005292 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.796401 B = 5289.245834 C = 6009.240299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 H 0.094 0.906 4 C -0.116 4.116 5 C -0.130 4.130 6 C 0.130 3.870 7 H 0.071 0.929 8 N -0.990 5.990 9 C 0.113 3.887 10 C 0.038 3.962 11 O -0.576 6.576 12 S 2.631 3.369 13 O -0.999 6.999 14 O -0.963 6.963 15 C -0.564 4.564 16 C 0.011 3.989 17 C -0.550 4.550 18 H 0.045 0.955 19 C 0.057 3.943 20 N -0.886 5.886 21 Si 0.924 3.076 22 H -0.274 1.274 23 H -0.277 1.277 24 H -0.264 1.264 25 C -0.136 4.136 26 C -0.189 4.189 27 C -0.138 4.138 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.129 0.871 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.381 0.619 40 H 0.129 0.871 41 H 0.110 0.890 42 H 0.266 0.734 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.088 0.912 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.064 17.861 11.041 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 H 0.112 0.888 4 C -0.154 4.154 5 C -0.169 4.169 6 C 0.024 3.976 7 H 0.090 0.910 8 N -0.827 5.827 9 C -0.012 4.012 10 C -0.041 4.041 11 O -0.382 6.382 12 S 2.728 3.272 13 O -0.990 6.990 14 O -0.953 6.953 15 C -0.695 4.695 16 C 0.009 3.991 17 C -0.588 4.588 18 H 0.063 0.937 19 C -0.147 4.147 20 N -0.521 5.521 21 Si 0.749 3.251 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.189 1.189 25 C -0.175 4.175 26 C -0.226 4.226 27 C -0.177 4.177 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.146 0.854 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.228 0.772 40 H 0.147 0.853 41 H 0.129 0.871 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.118 0.882 47 H 0.106 0.894 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.879 17.020 10.729 20.325 hybrid contribution -0.418 -1.075 0.185 1.168 sum 2.460 15.945 10.914 19.479 Atomic orbital electron populations 1.21918 0.95037 1.01367 1.02206 1.21681 0.95697 0.99856 0.93338 0.88755 1.22430 0.96192 0.99078 0.97680 1.22995 0.99718 1.00477 0.93678 1.21915 0.85520 0.98815 0.91355 0.91037 1.57663 1.28161 1.38375 1.58475 1.21602 0.86523 0.93112 0.99954 1.23111 0.95642 0.86719 0.98582 1.86944 1.58711 1.38418 1.54116 1.04216 0.73949 0.73100 0.75930 1.93416 1.73475 1.60348 1.71717 1.93509 1.30400 1.84531 1.86881 1.30013 1.12300 1.06519 1.20666 1.18353 1.01717 0.91433 0.87566 1.20771 0.93396 1.00463 1.44143 0.93696 1.25421 0.95688 1.00098 0.93503 1.70026 0.98410 1.40566 1.43129 0.86024 0.78617 0.81410 0.79056 1.19831 1.20205 1.18910 1.22409 0.94971 1.00327 0.99786 1.23191 0.92189 1.01795 1.05461 1.22740 0.99364 0.96801 0.98821 0.93953 0.91367 0.92537 0.89162 0.92115 0.92506 0.88212 0.90520 0.85363 0.90340 0.91798 0.77189 0.85322 0.87108 0.92471 0.89778 0.91698 0.90332 0.88168 0.89391 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.85 71.98 0.64 -1.84 16 2 C -0.09 -1.43 3.50 -10.07 -0.04 -1.47 16 3 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 4 C -0.12 -1.94 6.36 31.67 0.20 -1.73 16 5 C -0.13 -2.75 5.52 31.89 0.18 -2.57 16 6 C 0.13 3.69 3.26 46.07 0.15 3.84 16 7 H 0.07 2.56 6.83 -2.39 -0.02 2.54 16 8 N -0.99 -31.15 2.67 -487.81 -1.30 -32.45 16 9 C 0.11 2.64 4.90 86.38 0.42 3.06 16 10 C 0.04 0.82 7.01 71.98 0.50 1.33 16 11 O -0.58 -17.58 10.89 -127.18 -1.39 -18.96 16 12 S 2.63 117.65 4.47 -56.49 -0.25 117.40 16 13 O -1.00 -53.62 15.75 -127.65 -2.01 -55.63 16 14 O -0.96 -46.75 14.48 -118.95 -1.72 -48.47 16 15 C -0.56 -24.66 6.29 71.98 0.45 -24.21 16 16 C 0.01 0.57 1.73 -52.90 -0.09 0.48 16 17 C -0.55 -32.28 6.94 25.60 0.18 -32.10 16 18 H 0.04 2.77 7.81 -2.92 -0.02 2.75 16 19 C 0.06 3.34 5.43 84.65 0.46 3.80 16 20 N -0.89 -51.39 12.66 21.45 0.27 -51.12 16 21 Si 0.92 47.31 29.54 68.60 2.03 49.34 16 22 H -0.27 -14.16 7.11 99.48 0.71 -13.45 16 23 H -0.28 -14.05 7.11 99.48 0.71 -13.35 16 24 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 25 C -0.14 -6.42 9.17 30.59 0.28 -6.14 16 26 C -0.19 -8.41 9.88 30.62 0.30 -8.10 16 27 C -0.14 -3.05 6.01 31.32 0.19 -2.86 16 28 H 0.04 0.84 8.12 -2.39 -0.02 0.82 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.13 7.84 -2.38 -0.02 1.11 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.10 1.65 4.96 -2.39 -0.01 1.63 16 35 H 0.08 1.91 7.76 -2.38 -0.02 1.89 16 36 H 0.13 1.88 6.85 -2.39 -0.02 1.86 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 38 H 0.06 1.20 5.25 -2.39 -0.01 1.19 16 39 H 0.38 8.04 9.12 -74.06 -0.68 7.36 16 40 H 0.13 4.52 7.95 -2.39 -0.02 4.50 16 41 H 0.11 4.99 8.14 -2.39 -0.02 4.97 16 42 H 0.27 14.62 8.32 -92.71 -0.77 13.85 16 43 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 44 H 0.06 3.32 8.14 -2.39 -0.02 3.30 16 45 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 46 H 0.10 3.75 8.09 -2.39 -0.02 3.73 16 47 H 0.09 1.62 6.80 -2.39 -0.02 1.61 16 48 H 0.06 1.41 7.67 -2.39 -0.02 1.40 16 Total: -1.00 -78.79 381.40 -0.28 -79.07 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: 0.27 Total: 29.36 kcal Atomic # 6 Polarization: -72.35 SS G_CDS: 3.83 Total: -68.53 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -1.03 Total: -83.57 kcal Atomic # 8 Polarization: -117.94 SS G_CDS: -5.12 Total: -123.06 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Atomic # 16 Polarization: 117.65 SS G_CDS: -0.25 Total: 117.40 kcal Total: -78.79 -0.28 -79.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452004980.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.879 kcal (2) G-P(sol) polarization free energy of solvation -78.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds