Wall clock time and date at job start Tue Mar 31 2020 16:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46944 * 2 1 4 4 O 1.42900 * 109.47387 * 119.99907 * 2 1 3 5 5 C 1.35733 * 117.00503 * 147.52748 * 4 2 1 6 6 C 1.39025 * 119.88305 * 6.02521 * 5 4 2 7 7 C 1.37663 * 120.11202 * 179.76440 * 6 5 4 8 8 C 1.39969 * 119.88563 * 0.50723 * 7 6 5 9 9 C 1.47000 * 120.11182 * 179.71768 * 8 7 6 10 10 C 1.34977 * 119.99644 * 46.10679 * 9 8 7 11 11 C 1.46256 * 120.00234 * 11.05253 * 10 9 8 12 12 O 1.21721 * 120.00161 * 7.12432 * 11 10 9 13 13 N 1.34779 * 120.00270 * 187.12783 * 11 10 9 14 14 C 1.47068 * 136.05552 * 359.62462 * 13 11 10 15 15 C 1.53748 * 87.88832 * 152.96718 * 14 13 11 16 16 O 1.42904 * 114.39580 * 272.67335 * 15 14 13 17 17 C 1.50705 * 114.26988 * 139.79179 * 15 14 13 18 18 H 1.07997 * 120.00090 * 266.47832 * 17 15 14 19 19 C 1.37876 * 119.99567 * 86.47150 * 17 15 14 20 20 N 1.31509 * 120.00745 * 0.02562 * 19 17 15 21 21 Si 1.86807 * 119.99595 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46951 * 90.00379 * 21 19 17 23 23 H 1.48501 * 109.47239 * 210.00145 * 21 19 17 24 24 H 1.48503 * 109.47273 * 330.00541 * 21 19 17 25 25 C 1.47065 * 136.05896 * 180.02562 * 13 11 10 26 26 C 1.39971 * 119.77330 * 359.74512 * 8 7 6 27 27 C 1.37662 * 119.88680 * 0.02562 * 26 8 7 28 28 H 1.09004 * 109.46758 * 299.99842 * 1 2 3 29 29 H 1.09002 * 109.47014 * 59.99934 * 1 2 3 30 30 H 1.09001 * 109.47000 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47391 * 239.99980 * 2 1 3 32 32 H 1.08989 * 109.47137 * 300.00098 * 3 2 1 33 33 H 1.09006 * 109.47006 * 60.00002 * 3 2 1 34 34 H 1.09001 * 109.46995 * 179.97438 * 3 2 1 35 35 H 1.08001 * 119.94179 * 0.02562 * 6 5 4 36 36 H 1.08005 * 120.05595 * 180.25535 * 7 6 5 37 37 H 1.07998 * 120.00416 * 226.09638 * 9 8 7 38 38 H 1.08001 * 120.00086 * 191.05369 * 10 9 8 39 39 H 1.09001 * 113.46787 * 267.69741 * 14 13 11 40 40 H 1.09002 * 113.46688 * 38.13376 * 14 13 11 41 41 H 0.96690 * 114.00402 * 273.58774 * 16 15 14 42 42 H 0.97001 * 120.00579 * 179.97438 * 20 19 17 43 43 H 1.08996 * 113.46814 * 321.85633 * 25 13 11 44 44 H 1.08998 * 113.46989 * 92.24428 * 25 13 11 45 45 H 1.08004 * 120.05638 * 179.97438 * 26 8 7 46 46 H 1.08002 * 119.94141 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.1738 -1.3564 1.0508 6 6 3.9104 -1.2741 -0.1254 7 6 5.0974 -1.9608 -0.2463 8 6 5.5570 -2.7512 0.8135 9 6 6.8208 -3.4914 0.6874 10 6 7.9158 -2.8775 0.1915 11 6 7.9202 -1.4267 0.0065 12 8 6.9902 -0.7579 0.4181 13 7 8.9539 -0.8303 -0.6199 14 6 10.2176 -1.2692 -1.2309 15 6 10.1367 -0.0370 -2.1469 16 8 9.3892 -0.2420 -3.3474 17 6 11.4576 0.6508 -2.3779 18 1 11.7522 1.4789 -1.7504 19 6 12.2899 0.2227 -3.3903 20 7 11.9310 -0.7854 -4.1548 21 14 13.9275 1.0748 -3.6763 22 1 14.9798 0.4093 -2.8669 23 1 14.2838 0.9924 -5.1156 24 1 13.8208 2.5002 -3.2736 25 6 9.3178 0.5465 -0.9868 26 6 4.8089 -2.8347 1.9935 27 6 3.6256 -2.1404 2.1062 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 0.0005 35 1 3.5529 -0.6671 -0.9440 36 1 5.6710 -1.8929 -1.1589 37 1 6.8731 -4.5263 0.9916 38 1 8.7888 -3.4577 -0.0687 39 1 11.0635 -1.2446 -0.5439 40 1 10.1355 -2.2156 -1.7655 41 1 9.9079 -0.6096 -4.0759 42 1 12.5164 -1.0864 -4.8673 43 1 8.4692 1.1474 -1.3136 44 1 9.9259 1.0498 -0.2352 45 1 5.1591 -3.4436 2.8140 46 1 3.0474 -2.2046 3.0161 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491983387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:35 Heat of formation + Delta-G solvation = -32.106132 kcal Electronic energy + Delta-G solvation = -28046.319535 eV Core-core repulsion = 24096.636875 eV Total energy + Delta-G solvation = -3949.682660 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.25141 -39.58090 -38.18881 -36.93152 -34.04694 -33.68070 -32.69213 -32.21259 -30.80816 -29.41560 -28.04002 -27.43576 -25.54967 -25.09883 -23.37344 -23.20238 -21.34637 -20.65052 -19.52903 -18.36141 -17.97785 -17.45181 -16.64768 -15.84449 -15.61315 -15.41504 -15.14444 -14.74267 -14.53687 -14.29416 -14.10515 -13.97403 -13.72824 -13.30388 -13.10786 -12.97684 -12.75314 -12.58756 -12.50710 -12.39335 -12.15705 -11.97197 -11.85503 -11.57997 -11.33633 -11.21953 -11.07864 -11.02850 -10.85130 -10.51507 -10.49464 -10.27974 -9.60071 -9.39836 -9.20992 -8.80605 -8.70486 -8.39168 -7.76993 -7.52285 -6.42612 -4.52908 1.02907 1.64831 2.10363 3.12340 3.18946 3.20788 3.24153 3.64737 3.84848 4.03275 4.16454 4.59499 4.74397 4.80043 4.86652 4.94823 5.02334 5.05065 5.13234 5.31760 5.37231 5.49253 5.51953 5.53727 5.58680 5.60891 5.69805 5.86576 5.91263 5.91771 6.03191 6.10720 6.18059 6.25000 6.33745 6.40216 6.49670 6.52105 6.62774 6.66520 6.73136 6.88150 6.94870 7.10308 7.54820 7.60647 7.78693 8.49762 8.55416 8.84193 9.18587 9.46713 10.63939 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018498 B = 0.002596 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.347405 B =10783.999374 C =11739.653150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.073 3.927 3 C -0.177 4.177 4 O -0.314 6.314 5 C 0.136 3.864 6 C -0.218 4.218 7 C 0.005 3.995 8 C -0.098 4.098 9 C -0.039 4.039 10 C -0.192 4.192 11 C 0.556 3.444 12 O -0.551 6.551 13 N -0.627 5.627 14 C 0.070 3.930 15 C 0.241 3.759 16 O -0.571 6.571 17 C -0.533 4.533 18 H 0.072 0.928 19 C 0.072 3.928 20 N -0.899 5.899 21 Si 0.909 3.091 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.271 1.271 25 C 0.107 3.893 26 C -0.064 4.064 27 C -0.169 4.169 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.394 0.606 42 H 0.274 0.726 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.125 0.875 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.413 -4.433 7.091 16.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.017 3.983 3 C -0.234 4.234 4 O -0.228 6.228 5 C 0.091 3.909 6 C -0.236 4.236 7 C -0.013 4.013 8 C -0.099 4.099 9 C -0.059 4.059 10 C -0.212 4.212 11 C 0.348 3.652 12 O -0.432 6.432 13 N -0.360 5.360 14 C -0.053 4.053 15 C 0.199 3.801 16 O -0.384 6.384 17 C -0.571 4.571 18 H 0.090 0.910 19 C -0.131 4.131 20 N -0.539 5.539 21 Si 0.736 3.264 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.195 1.195 25 C -0.015 4.015 26 C -0.083 4.083 27 C -0.188 4.188 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.142 0.858 36 H 0.135 0.865 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.250 0.750 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.143 0.857 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.605 -4.015 7.749 17.880 hybrid contribution 1.750 0.149 -0.692 1.888 sum -13.855 -3.866 7.057 16.023 Atomic orbital electron populations 1.21886 0.92927 1.02913 1.02887 1.22461 0.94972 0.92959 0.87872 1.22315 1.02674 0.95661 1.02789 1.86034 1.36260 1.63410 1.37082 1.19086 0.85652 0.91851 0.94267 1.21026 0.98119 1.06294 0.98187 1.20893 0.92323 0.90375 0.97749 1.18733 0.95169 1.00840 0.95119 1.22210 0.91147 0.98474 0.94036 1.23043 0.99924 0.94304 1.03978 1.17892 0.81635 0.88149 0.77503 1.90831 1.34948 1.66249 1.51194 1.49747 1.19652 1.11786 1.54769 1.24265 0.83226 1.02403 0.95420 1.19573 0.88783 0.89459 0.82312 1.86037 1.41689 1.86908 1.23781 1.21440 1.01311 1.17621 1.16752 0.90960 1.25079 0.98948 0.94199 0.94844 1.69257 1.38471 1.26094 1.20090 0.86313 0.82444 0.80043 0.77621 1.20280 1.20871 1.19517 1.23301 0.97763 0.84525 0.95951 1.20897 0.93005 0.97952 0.96402 1.20119 0.98720 1.01442 0.98515 0.91605 0.90676 0.91835 0.90549 0.91108 0.91613 0.91509 0.85751 0.86516 0.85067 0.85391 0.90151 0.91768 0.74990 0.91572 0.91673 0.89845 0.85742 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.56 37.16 0.36 -0.86 16 2 C 0.07 0.79 2.81 -26.73 -0.08 0.72 16 3 C -0.18 -1.85 9.39 37.16 0.35 -1.50 16 4 O -0.31 -4.28 9.77 -18.91 -0.18 -4.46 16 5 C 0.14 2.03 6.68 -39.00 -0.26 1.77 16 6 C -0.22 -3.38 8.64 -39.50 -0.34 -3.72 16 7 C 0.00 0.08 6.69 -39.14 -0.26 -0.18 16 8 C -0.10 -1.52 4.43 -105.05 -0.47 -1.99 16 9 C -0.04 -0.54 9.79 -37.19 -0.36 -0.90 16 10 C -0.19 -3.09 9.75 -37.52 -0.37 -3.45 16 11 C 0.56 11.24 7.10 -13.04 -0.09 11.15 16 12 O -0.55 -12.20 13.13 5.17 0.07 -12.14 16 13 N -0.63 -13.25 3.69 -186.76 -0.69 -13.94 16 14 C 0.07 1.49 7.76 -8.38 -0.07 1.42 16 15 C 0.24 5.72 1.58 -91.11 -0.14 5.57 16 16 O -0.57 -14.59 13.55 -35.23 -0.48 -15.07 16 17 C -0.53 -13.19 8.70 -34.44 -0.30 -13.49 16 18 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 19 C 0.07 1.76 5.39 -17.82 -0.10 1.66 16 20 N -0.90 -22.44 11.01 55.43 0.61 -21.83 16 21 Si 0.91 19.18 29.54 -169.99 -5.02 14.16 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 C 0.11 2.34 8.02 -8.50 -0.07 2.28 16 26 C -0.06 -0.89 9.79 -39.14 -0.38 -1.27 16 27 C -0.17 -2.37 9.97 -39.50 -0.39 -2.76 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.81 5.84 -51.93 -0.30 0.51 16 32 H 0.07 0.60 8.14 -51.94 -0.42 0.18 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.84 7.75 -51.93 -0.40 0.44 16 35 H 0.12 1.75 5.71 -52.49 -0.30 1.45 16 36 H 0.12 2.09 7.26 -52.48 -0.38 1.71 16 37 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.13 1.83 7.98 -52.49 -0.42 1.41 16 39 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.39 10.15 6.32 45.56 0.29 10.44 16 42 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 43 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 45 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 46 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 382.40 15.07 5.76 5.76 Total: -1.00 -28.89 382.40 -9.03 -37.92 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -6.13 Total: 15.16 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -2.97 Total: -5.56 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: -0.08 Total: -35.77 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.59 Total: -31.67 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.89 -9.03 -37.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491983387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.815 kcal (2) G-P(sol) polarization free energy of solvation -28.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds