Wall clock time and date at job start Tue Mar 31 2020 16:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46944 * 2 1 4 4 O 1.42900 * 109.47387 * 119.99907 * 2 1 3 5 5 C 1.35733 * 117.00503 * 147.52748 * 4 2 1 6 6 C 1.39025 * 119.88305 * 6.02521 * 5 4 2 7 7 C 1.37663 * 120.11202 * 179.76440 * 6 5 4 8 8 C 1.39969 * 119.88563 * 0.50723 * 7 6 5 9 9 C 1.47000 * 120.11182 * 179.71768 * 8 7 6 10 10 C 1.34977 * 119.99644 * 46.10679 * 9 8 7 11 11 C 1.46256 * 120.00234 * 11.05253 * 10 9 8 12 12 O 1.21721 * 120.00161 * 7.12432 * 11 10 9 13 13 N 1.34779 * 120.00270 * 187.12783 * 11 10 9 14 14 C 1.47068 * 136.05552 * 359.62462 * 13 11 10 15 15 C 1.53748 * 87.88832 * 152.96718 * 14 13 11 16 16 O 1.42904 * 114.39580 * 272.67335 * 15 14 13 17 17 C 1.50705 * 114.26988 * 139.79179 * 15 14 13 18 18 H 1.07997 * 120.00090 * 266.47832 * 17 15 14 19 19 C 1.37876 * 119.99567 * 86.47150 * 17 15 14 20 20 N 1.31509 * 120.00745 * 0.02562 * 19 17 15 21 21 Si 1.86807 * 119.99595 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46951 * 90.00379 * 21 19 17 23 23 H 1.48501 * 109.47239 * 210.00145 * 21 19 17 24 24 H 1.48503 * 109.47273 * 330.00541 * 21 19 17 25 25 C 1.47065 * 136.05896 * 180.02562 * 13 11 10 26 26 C 1.39971 * 119.77330 * 359.74512 * 8 7 6 27 27 C 1.37662 * 119.88680 * 0.02562 * 26 8 7 28 28 H 1.09004 * 109.46758 * 299.99842 * 1 2 3 29 29 H 1.09002 * 109.47014 * 59.99934 * 1 2 3 30 30 H 1.09001 * 109.47000 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47391 * 239.99980 * 2 1 3 32 32 H 1.08989 * 109.47137 * 300.00098 * 3 2 1 33 33 H 1.09006 * 109.47006 * 60.00002 * 3 2 1 34 34 H 1.09001 * 109.46995 * 179.97438 * 3 2 1 35 35 H 1.08001 * 119.94179 * 0.02562 * 6 5 4 36 36 H 1.08005 * 120.05595 * 180.25535 * 7 6 5 37 37 H 1.07998 * 120.00416 * 226.09638 * 9 8 7 38 38 H 1.08001 * 120.00086 * 191.05369 * 10 9 8 39 39 H 1.09001 * 113.46787 * 267.69741 * 14 13 11 40 40 H 1.09002 * 113.46688 * 38.13376 * 14 13 11 41 41 H 0.96690 * 114.00402 * 273.58774 * 16 15 14 42 42 H 0.97001 * 120.00579 * 179.97438 * 20 19 17 43 43 H 1.08996 * 113.46814 * 321.85633 * 25 13 11 44 44 H 1.08998 * 113.46989 * 92.24428 * 25 13 11 45 45 H 1.08004 * 120.05638 * 179.97438 * 26 8 7 46 46 H 1.08002 * 119.94141 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.1738 -1.3564 1.0508 6 6 3.9104 -1.2741 -0.1254 7 6 5.0974 -1.9608 -0.2463 8 6 5.5570 -2.7512 0.8135 9 6 6.8208 -3.4914 0.6874 10 6 7.9158 -2.8775 0.1915 11 6 7.9202 -1.4267 0.0065 12 8 6.9902 -0.7579 0.4181 13 7 8.9539 -0.8303 -0.6199 14 6 10.2176 -1.2692 -1.2309 15 6 10.1367 -0.0370 -2.1469 16 8 9.3892 -0.2420 -3.3474 17 6 11.4576 0.6508 -2.3779 18 1 11.7522 1.4789 -1.7504 19 6 12.2899 0.2227 -3.3903 20 7 11.9310 -0.7854 -4.1548 21 14 13.9275 1.0748 -3.6763 22 1 14.9798 0.4093 -2.8669 23 1 14.2838 0.9924 -5.1156 24 1 13.8208 2.5002 -3.2736 25 6 9.3178 0.5465 -0.9868 26 6 4.8089 -2.8347 1.9935 27 6 3.6256 -2.1404 2.1062 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 0.0005 35 1 3.5529 -0.6671 -0.9440 36 1 5.6710 -1.8929 -1.1589 37 1 6.8731 -4.5263 0.9916 38 1 8.7888 -3.4577 -0.0687 39 1 11.0635 -1.2446 -0.5439 40 1 10.1355 -2.2156 -1.7655 41 1 9.9079 -0.6096 -4.0759 42 1 12.5164 -1.0864 -4.8673 43 1 8.4692 1.1474 -1.3136 44 1 9.9259 1.0498 -0.2352 45 1 5.1591 -3.4436 2.8140 46 1 3.0474 -2.2046 3.0161 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491983387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:35 Heat of formation + Delta-G solvation = -49.305347 kcal Electronic energy + Delta-G solvation = -28047.065349 eV Core-core repulsion = 24096.636875 eV Total energy + Delta-G solvation = -3950.428474 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.47581 -41.06206 -39.58968 -38.28284 -35.88248 -34.76751 -34.13360 -33.74680 -31.93930 -30.92938 -29.42686 -28.21220 -27.28713 -26.82728 -24.57463 -24.34219 -22.70708 -21.68767 -21.10485 -19.68075 -19.43274 -19.05063 -18.16522 -17.26759 -17.00077 -16.81042 -16.38970 -16.20004 -15.97496 -15.81476 -15.29280 -15.15894 -14.94180 -14.80484 -14.38058 -14.28448 -14.10484 -13.79309 -13.69525 -13.62673 -13.41690 -13.28317 -13.18851 -12.84292 -12.79065 -12.71542 -12.44789 -12.24404 -12.18699 -12.15105 -11.85098 -11.52609 -11.31755 -10.86495 -10.63787 -10.57248 -10.21382 -9.92569 -9.42715 -8.70833 -8.28131 -6.45426 -0.17524 0.49108 0.91329 1.46192 1.49685 1.58954 2.06863 2.23074 2.35399 2.42167 2.87414 2.93817 3.58122 3.74970 3.80684 3.81988 3.89092 3.91626 3.98414 4.13310 4.15783 4.35620 4.41960 4.46925 4.49367 4.60580 4.63953 4.67060 4.75106 4.78563 4.83273 4.86265 4.91198 4.91512 5.03015 5.12544 5.13193 5.20911 5.22122 5.28894 5.41655 5.49748 5.71279 5.72431 5.85261 5.90520 6.47381 6.60299 6.93861 7.24735 7.30306 7.48104 8.77853 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018498 B = 0.002596 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.347405 B =10783.999374 C =11739.653150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.064 3.936 3 C -0.174 4.174 4 O -0.321 6.321 5 C 0.130 3.870 6 C -0.230 4.230 7 C -0.016 4.016 8 C -0.121 4.121 9 C -0.004 4.004 10 C -0.221 4.221 11 C 0.549 3.451 12 O -0.578 6.578 13 N -0.634 5.634 14 C 0.087 3.913 15 C 0.220 3.780 16 O -0.586 6.586 17 C -0.553 4.553 18 H 0.073 0.927 19 C 0.032 3.968 20 N -0.917 5.917 21 Si 0.971 3.029 22 H -0.270 1.270 23 H -0.283 1.283 24 H -0.271 1.271 25 C 0.107 3.893 26 C -0.057 4.057 27 C -0.175 4.175 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.037 0.963 35 H 0.127 0.873 36 H 0.092 0.908 37 H 0.181 0.819 38 H 0.147 0.853 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.389 0.611 42 H 0.277 0.723 43 H 0.048 0.952 44 H 0.098 0.902 45 H 0.161 0.839 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.764 -5.548 8.521 17.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.009 3.991 3 C -0.231 4.231 4 O -0.235 6.235 5 C 0.084 3.916 6 C -0.249 4.249 7 C -0.035 4.035 8 C -0.121 4.121 9 C -0.024 4.024 10 C -0.242 4.242 11 C 0.343 3.657 12 O -0.461 6.461 13 N -0.366 5.366 14 C -0.037 4.037 15 C 0.179 3.821 16 O -0.399 6.399 17 C -0.591 4.591 18 H 0.091 0.909 19 C -0.168 4.168 20 N -0.558 5.558 21 Si 0.796 3.204 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.196 1.196 25 C -0.016 4.016 26 C -0.075 4.075 27 C -0.193 4.193 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.144 0.856 36 H 0.110 0.890 37 H 0.198 0.802 38 H 0.165 0.835 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.245 0.755 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.116 0.884 45 H 0.178 0.822 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.969 -5.137 9.188 19.127 hybrid contribution 1.677 0.534 -1.124 2.088 sum -14.292 -4.603 8.065 17.044 Atomic orbital electron populations 1.21889 0.90507 1.03477 1.04111 1.22744 0.96786 0.92633 0.86985 1.22301 1.00785 0.95974 1.04063 1.86032 1.35636 1.63378 1.38488 1.19292 0.86006 0.92053 0.94218 1.21116 0.98251 1.06521 0.98997 1.20841 0.92946 0.91912 0.97779 1.19038 0.96287 1.01299 0.95519 1.22700 0.89259 1.00079 0.90324 1.22986 1.02038 0.91879 1.07267 1.18665 0.80563 0.89927 0.76515 1.90815 1.35580 1.67367 1.52350 1.49795 1.20101 1.11101 1.55603 1.24013 0.83700 1.01072 0.94870 1.19842 0.88847 0.91270 0.82158 1.86024 1.42289 1.87080 1.24500 1.21655 1.01914 1.18071 1.17419 0.90908 1.25771 1.01837 0.94701 0.94513 1.69319 1.39402 1.26784 1.20294 0.85355 0.78813 0.78896 0.77364 1.19539 1.20810 1.19577 1.23262 0.97160 0.85249 0.95907 1.21289 0.92274 0.97485 0.96472 1.20519 0.99060 1.00806 0.98960 0.91274 0.88535 0.91606 0.90810 0.88964 0.91230 0.94339 0.85573 0.88988 0.80240 0.83524 0.88988 0.91859 0.75507 0.91306 0.93343 0.88360 0.82185 0.83534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.56 71.98 0.69 -1.40 16 2 C 0.06 1.35 2.81 30.60 0.09 1.44 16 3 C -0.17 -3.62 9.39 71.98 0.68 -2.95 16 4 O -0.32 -8.59 9.77 -90.57 -0.88 -9.47 16 5 C 0.13 3.83 6.68 22.65 0.15 3.98 16 6 C -0.23 -7.37 8.64 22.32 0.19 -7.18 16 7 C -0.02 -0.56 6.69 22.55 0.15 -0.41 16 8 C -0.12 -3.60 4.43 -20.14 -0.09 -3.69 16 9 C 0.00 -0.11 9.79 23.82 0.23 0.12 16 10 C -0.22 -6.86 9.75 23.60 0.23 -6.63 16 11 C 0.55 22.41 7.10 86.33 0.61 23.02 16 12 O -0.58 -26.23 13.13 -4.42 -0.06 -26.28 16 13 N -0.63 -27.18 3.69 -863.48 -3.18 -30.36 16 14 C 0.09 3.69 7.76 83.26 0.65 4.33 16 15 C 0.22 10.67 1.58 -11.11 -0.02 10.65 16 16 O -0.59 -30.94 13.55 -148.98 -2.02 -32.96 16 17 C -0.55 -27.54 8.70 25.60 0.22 -27.32 16 18 H 0.07 3.52 7.81 -2.91 -0.02 3.50 16 19 C 0.03 1.57 5.39 84.66 0.46 2.03 16 20 N -0.92 -45.98 11.01 21.45 0.24 -45.74 16 21 Si 0.97 39.01 29.54 68.60 2.03 41.04 16 22 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 23 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 25 C 0.11 4.82 8.02 83.19 0.67 5.49 16 26 C -0.06 -1.44 9.79 22.55 0.22 -1.22 16 27 C -0.17 -4.59 9.97 22.32 0.22 -4.36 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.58 5.84 -2.39 -0.01 1.57 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.04 1.01 7.75 -2.39 -0.02 0.99 16 35 H 0.13 3.79 5.71 -2.91 -0.02 3.77 16 36 H 0.09 3.53 7.26 -2.91 -0.02 3.51 16 37 H 0.18 2.77 8.06 -2.91 -0.02 2.74 16 38 H 0.15 3.93 7.98 -2.91 -0.02 3.91 16 39 H 0.09 3.67 8.10 -2.39 -0.02 3.65 16 40 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.39 20.73 6.32 -74.06 -0.47 20.26 16 42 H 0.28 13.10 8.31 -92.71 -0.77 12.33 16 43 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.10 4.04 8.10 -2.39 -0.02 4.02 16 45 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 46 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -63.62 382.40 1.99 -61.63 By element: Atomic # 1 Polarization: 45.72 SS G_CDS: 0.52 Total: 46.24 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 5.35 Total: -4.09 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -2.95 Total: -76.10 kcal Atomic # 8 Polarization: -65.76 SS G_CDS: -2.96 Total: -68.72 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Total: -63.62 1.99 -61.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491983387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.322 kcal (2) G-P(sol) polarization free energy of solvation -63.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds