Wall clock time and date at job start Tue Mar 31 2020 17:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.63917 * 2 1 4 4 C 1.55157 * 110.72416 * 236.85952 * 2 1 3 5 5 C 1.54910 * 101.58022 * 276.96111 * 4 2 1 6 6 N 1.47420 * 104.83359 * 322.98921 * 5 4 2 7 7 C 1.34779 * 125.65128 * 204.09647 * 6 5 4 8 8 O 1.21724 * 120.00211 * 180.02562 * 7 6 5 9 9 C 1.46254 * 119.99559 * 0.02562 * 7 6 5 10 10 C 1.35026 * 119.99983 * 173.20069 * 9 7 6 11 11 C 1.46955 * 119.99731 * 348.59010 * 10 9 7 12 12 C 1.40027 * 120.10200 * 316.56056 * 11 10 9 13 13 C 1.37590 * 119.90034 * 180.02562 * 12 11 10 14 14 C 1.39180 * 120.10292 * 0.02562 * 13 12 11 15 15 O 1.35568 * 119.89903 * 179.97438 * 14 13 12 16 16 C 1.34783 * 117.00091 * 354.35854 * 15 14 13 17 17 H 1.07995 * 119.99987 * 5.05286 * 16 15 14 18 18 C 1.38722 * 119.99565 * 185.04649 * 16 15 14 19 19 N 1.31505 * 120.00450 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99668 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47086 * 90.00040 * 20 18 16 22 22 H 1.48500 * 109.47079 * 210.00398 * 20 18 16 23 23 H 1.48503 * 109.46727 * 330.00393 * 20 18 16 24 24 C 1.39174 * 120.19977 * 359.97438 * 14 13 12 25 25 C 1.37598 * 120.10162 * 0.02562 * 24 14 13 26 26 C 1.47030 * 108.70392 * 24.35356 * 6 5 4 27 27 H 1.08994 * 109.88659 * 239.29723 * 26 6 5 28 28 C 1.53000 * 109.87709 * 118.13157 * 26 6 5 29 29 O 1.42897 * 109.47252 * 66.45890 * 28 26 6 30 30 H 1.08995 * 109.47222 * 181.68756 * 1 2 3 31 31 H 1.08999 * 109.47236 * 301.68521 * 1 2 3 32 32 H 1.09000 * 109.47156 * 61.68801 * 1 2 3 33 33 H 1.08997 * 111.00505 * 158.88366 * 4 2 1 34 34 H 1.09000 * 110.99733 * 35.03150 * 4 2 1 35 35 H 1.08998 * 110.36609 * 204.14714 * 5 4 2 36 36 H 1.09005 * 110.45828 * 81.87264 * 5 4 2 37 37 H 1.07999 * 120.00043 * 353.19692 * 9 7 6 38 38 H 1.07994 * 120.00158 * 168.58708 * 10 9 7 39 39 H 1.08006 * 120.05019 * 0.02562 * 12 11 10 40 40 H 1.08005 * 119.94948 * 180.27585 * 13 12 11 41 41 H 0.96998 * 120.00428 * 179.97438 * 19 18 16 42 42 H 1.08001 * 119.94766 * 179.97438 * 24 14 13 43 43 H 1.08003 * 120.04519 * 179.97438 * 25 24 14 44 44 H 1.09005 * 109.46795 * 186.45367 * 28 26 6 45 45 H 1.08996 * 109.47490 * 306.45172 * 28 26 6 46 46 H 0.96699 * 114.00165 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0790 -0.7933 -1.2151 5 6 2.0171 -2.2493 -0.6896 6 7 2.3780 -2.1515 0.7364 7 6 2.8950 -3.1453 1.4857 8 8 3.1557 -2.9507 2.6587 9 6 3.1429 -4.4576 0.8895 10 6 3.7859 -5.4104 1.5979 11 6 4.4550 -5.0624 2.8591 12 6 5.2244 -3.8958 2.9473 13 6 5.8496 -3.5742 4.1300 14 6 5.7186 -4.4067 5.2377 15 8 6.3367 -4.0861 6.4009 16 6 7.1543 -3.0147 6.3842 17 1 7.2298 -2.4068 5.4949 18 6 7.8988 -2.6929 7.5097 19 7 7.8072 -3.4334 8.5925 20 14 9.0315 -1.2076 7.4869 21 1 8.2843 -0.0083 7.9434 22 1 10.1823 -1.4488 8.3939 23 1 9.5283 -0.9852 6.1052 24 6 4.9549 -5.5672 5.1548 25 6 4.3261 -5.8968 3.9761 26 6 2.0748 -0.7921 1.2074 27 1 2.9824 -0.3179 1.5805 28 6 1.0206 -0.8483 2.3148 29 8 1.5707 -1.4958 3.4637 30 1 -0.3633 -1.0272 0.0303 31 1 -0.3633 0.5398 0.8745 32 1 -0.3633 0.4874 -0.9047 33 1 3.1051 -0.5025 -1.4402 34 1 1.4379 -0.6651 -2.0872 35 1 2.7344 -2.8750 -1.2205 36 1 1.0098 -2.6514 -0.7993 37 1 2.8117 -4.6645 -0.1174 38 1 3.8084 -6.4283 1.2377 39 1 5.3270 -3.2493 2.0881 40 1 6.4395 -2.6722 4.2002 41 1 8.3281 -3.2087 9.3794 42 1 4.8563 -6.2105 6.0167 43 1 3.7341 -6.7979 3.9126 44 1 0.7171 0.1647 2.5792 45 1 0.1535 -1.4072 1.9631 46 1 0.9565 -1.5666 4.2072 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492007225.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:00 Heat of formation + Delta-G solvation = -45.766191 kcal Electronic energy + Delta-G solvation = -28830.589991 eV Core-core repulsion = 24880.314986 eV Total energy + Delta-G solvation = -3950.275005 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.34608 -38.93854 -37.85684 -36.15024 -36.05520 -33.01391 -32.77115 -31.99428 -30.45348 -29.97527 -28.31027 -27.10992 -25.25383 -25.03686 -23.58758 -22.21462 -21.57761 -20.64998 -19.33192 -18.20251 -17.89876 -17.43836 -17.00361 -16.80571 -16.19308 -15.06491 -14.65960 -14.52187 -14.47548 -14.32631 -14.12699 -13.71180 -13.65900 -13.46941 -13.23300 -13.02925 -12.79900 -12.70035 -12.46434 -12.36075 -12.22813 -11.92821 -11.64242 -11.59667 -11.22442 -11.14933 -11.06839 -10.88691 -10.73122 -10.66406 -10.46918 -10.35515 -9.73590 -9.34322 -9.16841 -9.02214 -8.59820 -8.41276 -7.75916 -6.76162 -6.38811 -3.93849 1.39025 2.52073 2.82469 3.18459 3.19509 3.19744 3.23803 3.84133 4.03520 4.07247 4.19752 4.48886 4.71947 4.79439 4.92664 5.01276 5.06645 5.20756 5.23942 5.25424 5.29526 5.31214 5.36076 5.37727 5.40943 5.49726 5.63938 5.69944 5.73251 5.73944 5.86189 5.86465 5.94284 6.06705 6.32447 6.35456 6.49422 6.61413 6.77088 6.88442 7.13795 7.21834 7.42886 7.58358 7.60821 7.87055 7.93180 8.02196 8.08916 8.81236 9.07423 9.80163 10.79365 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.003288 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.284233 B = 8513.784794 C = 9604.883710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 H 0.089 0.911 4 C -0.129 4.129 5 C 0.102 3.898 6 N -0.620 5.620 7 C 0.545 3.455 8 O -0.464 6.464 9 C -0.260 4.260 10 C 0.020 3.980 11 C -0.186 4.186 12 C 0.018 3.982 13 C -0.240 4.240 14 C 0.172 3.828 15 O -0.175 6.175 16 C -0.387 4.387 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.267 1.267 24 C -0.210 4.210 25 C -0.046 4.046 26 C 0.145 3.855 27 H 0.078 0.922 28 C 0.066 3.934 29 O -0.530 6.530 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.269 0.731 42 H 0.114 0.886 43 H 0.109 0.891 44 H 0.043 0.957 45 H 0.041 0.959 46 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.480 4.519 -20.722 25.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.108 0.892 4 C -0.167 4.167 5 C -0.022 4.022 6 N -0.359 5.359 7 C 0.336 3.664 8 O -0.336 6.336 9 C -0.281 4.281 10 C 0.000 4.000 11 C -0.187 4.187 12 C 0.000 4.000 13 C -0.259 4.259 14 C 0.117 3.883 15 O -0.077 6.077 16 C -0.463 4.463 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.229 4.229 25 C -0.064 4.064 26 C 0.041 3.959 27 H 0.096 0.904 28 C -0.013 4.013 29 O -0.332 6.332 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.113 0.887 40 H 0.140 0.860 41 H 0.079 0.921 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -13.643 4.413 -19.902 24.529 hybrid contribution -0.192 0.947 0.076 0.969 sum -13.835 5.360 -19.826 24.763 Atomic orbital electron populations 1.21889 0.94275 1.02257 1.02049 1.22175 0.96346 0.99338 0.93887 0.89246 1.22849 1.02030 0.94488 0.97309 1.22214 1.00156 0.97221 0.82560 1.48547 1.65758 1.11281 1.10285 1.18151 0.78283 0.83664 0.86335 1.91074 1.47255 1.80818 1.14422 1.22659 1.09422 0.95051 1.00932 1.22294 0.88511 0.97055 0.92123 1.18270 1.07132 0.99235 0.94020 1.20522 0.91492 0.92000 0.96021 1.20928 1.08504 1.02744 0.93773 1.19521 0.90693 0.92139 0.85898 1.83896 1.52013 1.44762 1.27074 1.21384 1.20199 1.03651 1.01079 0.88995 1.25295 0.97668 0.99069 0.94525 1.70021 1.39410 1.37640 1.02683 0.85719 0.79078 0.80015 0.78676 1.19886 1.20269 1.19174 1.19973 1.05902 0.98304 0.98771 1.20604 0.96675 0.97157 0.91985 1.21453 0.97891 0.83763 0.92792 0.90403 1.22581 0.95343 0.95605 0.87812 1.87053 1.41477 1.80786 1.23934 0.92219 0.92104 0.92245 0.90433 0.89892 0.90734 0.92082 0.86642 0.86270 0.88676 0.85990 0.92065 0.86780 0.87332 0.93878 0.94074 0.79040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 7.91 37.16 0.29 -0.65 16 2 C -0.10 -0.76 3.55 -88.78 -0.32 -1.08 16 3 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 4 C -0.13 -0.88 6.58 -24.58 -0.16 -1.04 16 5 C 0.10 0.89 6.17 -2.53 -0.02 0.87 16 6 N -0.62 -8.00 3.06 -164.69 -0.50 -8.51 16 7 C 0.54 8.96 6.54 -13.04 -0.09 8.87 16 8 O -0.46 -9.63 9.46 -18.94 -0.18 -9.81 16 9 C -0.26 -3.65 9.30 -37.50 -0.35 -4.00 16 10 C 0.02 0.30 9.80 -37.19 -0.36 -0.07 16 11 C -0.19 -3.61 4.54 -105.03 -0.48 -4.09 16 12 C 0.02 0.39 6.59 -39.15 -0.26 0.13 16 13 C -0.24 -5.89 9.14 -39.47 -0.36 -6.25 16 14 C 0.17 4.53 6.66 -38.88 -0.26 4.27 16 15 O -0.17 -5.29 9.74 0.74 0.01 -5.28 16 16 C -0.39 -11.40 9.48 30.91 0.29 -11.11 16 17 H 0.09 2.56 5.18 -52.49 -0.27 2.28 16 18 C 0.04 1.10 5.50 -17.51 -0.10 1.01 16 19 N -0.86 -26.11 13.67 55.48 0.76 -25.35 16 20 Si 0.94 21.39 29.55 -169.99 -5.02 16.37 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 C -0.21 -4.86 9.97 -39.47 -0.39 -5.26 16 25 C -0.05 -0.91 9.78 -39.15 -0.38 -1.29 16 26 C 0.15 1.74 3.22 -66.94 -0.22 1.52 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 C 0.07 0.80 5.37 37.16 0.20 1.00 16 29 O -0.53 -8.63 10.33 -59.34 -0.61 -9.24 16 30 H 0.06 0.42 6.84 -51.93 -0.36 0.07 16 31 H 0.06 0.38 6.88 -51.93 -0.36 0.03 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.40 8.04 -51.93 -0.42 -0.02 16 35 H 0.07 0.59 7.24 -51.93 -0.38 0.22 16 36 H 0.06 0.47 7.79 -51.93 -0.40 0.07 16 37 H 0.12 1.24 6.96 -52.49 -0.37 0.87 16 38 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.10 1.94 7.01 -52.48 -0.37 1.57 16 40 H 0.12 3.03 5.62 -52.48 -0.29 2.74 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.11 2.52 8.06 -52.49 -0.42 2.10 16 43 H 0.11 1.78 8.06 -52.48 -0.42 1.35 16 44 H 0.04 0.44 7.47 -51.93 -0.39 0.05 16 45 H 0.04 0.46 6.81 -51.93 -0.35 0.11 16 46 H 0.36 4.60 9.12 45.56 0.42 5.02 16 LS Contribution 367.28 15.07 5.53 5.53 Total: -1.00 -36.25 367.28 -8.60 -44.85 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.63 Total: 8.59 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -2.95 Total: -17.16 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.25 Total: -33.86 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.79 Total: -24.33 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.25 -8.60 -44.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492007225.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.914 kcal (2) G-P(sol) polarization free energy of solvation -36.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds