Wall clock time and date at job start Tue Mar 31 2020 16:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 O 1.45200 * 109.46937 * 64.99847 * 3 2 1 14 14 C 1.34233 * 117.00487 * 270.00398 * 13 3 2 15 15 O 1.20827 * 119.99435 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00238 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.47135 * 59.99355 * 16 14 13 18 18 C 1.53003 * 109.46954 * 300.00084 * 16 14 13 19 19 N 1.46500 * 109.47234 * 180.02562 * 16 14 13 20 20 C 1.34774 * 119.99981 * 204.99979 * 19 16 14 21 21 O 1.21699 * 119.99791 * 359.97438 * 20 19 16 22 22 C 1.46423 * 120.00004 * 179.97438 * 20 19 16 23 23 C 1.34807 * 120.00167 * 179.97438 * 22 20 19 24 24 C 1.47206 * 120.00039 * 180.02562 * 23 22 20 25 25 C 1.39836 * 120.17239 * 359.71788 * 24 23 22 26 26 C 1.37894 * 119.82709 * 179.72570 * 25 24 23 27 27 C 1.38394 * 120.16977 * 0.58027 * 26 25 24 28 28 C 1.38407 * 120.34563 * 359.69675 * 27 26 25 29 29 C 1.37887 * 120.16911 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 35 35 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 36 36 H 1.08992 * 109.47424 * 59.99671 * 18 16 14 37 37 H 1.08994 * 109.47339 * 180.02562 * 18 16 14 38 38 H 1.09014 * 109.46670 * 300.00046 * 18 16 14 39 39 H 0.97001 * 119.99676 * 24.99450 * 19 16 14 40 40 H 1.08002 * 120.00164 * 0.02562 * 22 20 19 41 41 H 1.08004 * 119.99960 * 359.97438 * 23 22 20 42 42 H 1.08004 * 120.08173 * 0.02562 * 25 24 23 43 43 H 1.08004 * 119.91331 * 180.29151 * 26 25 24 44 44 H 1.08007 * 119.83143 * 179.71458 * 27 26 25 45 45 H 1.08001 * 119.91286 * 180.02562 * 28 27 26 46 46 H 1.08000 * 120.08276 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 8 1.6559 2.0916 1.2407 14 6 0.4727 2.7254 1.2561 15 8 -0.2189 2.7377 0.2653 16 6 0.0074 3.4225 2.5085 17 1 0.7245 4.1968 2.7811 18 6 -0.1028 2.4061 3.6469 19 7 -1.3032 4.0320 2.2700 20 6 -1.6976 5.0911 3.0044 21 8 -0.9650 5.5408 3.8659 22 6 -3.0073 5.7006 2.7656 23 6 -3.4020 6.7596 3.5005 24 6 -4.7190 7.3720 3.2608 25 6 -5.5611 6.8618 2.2678 26 6 -6.7957 7.4374 2.0532 27 6 -7.1970 8.5248 2.8094 28 6 -6.3668 9.0391 3.7902 29 6 -5.1322 8.4703 4.0213 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.8292 -0.0609 -2.9500 36 1 0.8720 1.9523 3.8244 37 1 -0.4397 2.9102 4.5526 38 1 -0.8200 1.6317 3.3742 39 1 -1.8872 3.6733 1.5835 40 1 -3.6576 5.3012 2.0013 41 1 -2.7523 7.1582 4.2656 42 1 -5.2473 6.0161 1.6739 43 1 -7.4491 7.0416 1.2898 44 1 -8.1633 8.9743 2.6335 45 1 -6.6873 9.8877 4.3765 46 1 -4.4857 8.8725 4.7872 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492036349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:23 Heat of formation + Delta-G solvation = -92.209854 kcal Electronic energy + Delta-G solvation = -27138.891036 eV Core-core repulsion = 23186.602083 eV Total energy + Delta-G solvation = -3952.288953 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.35877 -39.64072 -39.12093 -36.22015 -34.92327 -34.27865 -33.58262 -31.51618 -31.39088 -31.02461 -29.55713 -27.32492 -25.22721 -24.18914 -23.18675 -22.91179 -21.59736 -20.48192 -19.88422 -19.38055 -18.01038 -17.33478 -16.86155 -16.46482 -16.07349 -15.69946 -15.47127 -15.26044 -14.88608 -14.75130 -14.44865 -13.96472 -13.74923 -13.72124 -13.34959 -13.10714 -13.00756 -12.87747 -12.41181 -12.24824 -11.93885 -11.69472 -11.63181 -11.50772 -11.30675 -11.25149 -11.23765 -10.98353 -10.70732 -10.66389 -10.33629 -10.07341 -9.87537 -9.71215 -9.44400 -9.35666 -9.19674 -8.87918 -8.58464 -8.49446 -6.22226 -4.29542 0.22886 1.01804 1.71802 2.81682 2.85812 3.15748 3.24733 3.28466 3.31385 3.55939 3.69458 4.29892 4.33417 4.40308 4.56535 4.67886 4.89072 4.94447 5.02817 5.09386 5.11525 5.15459 5.24697 5.43587 5.53495 5.59940 5.75944 5.79305 5.83536 5.93457 6.10617 6.12195 6.15354 6.19012 6.24378 6.30572 6.34847 6.40432 6.56044 6.79712 6.88231 7.09584 7.16264 7.45423 7.56405 7.67671 7.86230 8.09867 8.12990 8.51695 8.81617 9.35724 10.84430 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.023244 B = 0.001971 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.348395 B =14201.442757 C =14430.872646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.912 3.088 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.347 6.347 14 C 0.452 3.548 15 O -0.515 6.515 16 C 0.148 3.852 17 H 0.122 0.878 18 C -0.155 4.155 19 N -0.707 5.707 20 C 0.551 3.449 21 O -0.546 6.546 22 C -0.202 4.202 23 C -0.025 4.025 24 C -0.073 4.073 25 C -0.102 4.102 26 C -0.122 4.122 27 C -0.112 4.112 28 C -0.124 4.124 29 C -0.096 4.096 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.109 0.891 35 H 0.267 0.733 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.411 0.589 40 H 0.131 0.869 41 H 0.138 0.862 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.314 11.696 10.581 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.739 3.261 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.262 6.262 14 C 0.294 3.706 15 O -0.405 6.405 16 C 0.042 3.958 17 H 0.139 0.861 18 C -0.213 4.213 19 N -0.361 5.361 20 C 0.340 3.660 21 O -0.425 6.425 22 C -0.223 4.223 23 C -0.045 4.045 24 C -0.073 4.073 25 C -0.120 4.120 26 C -0.140 4.140 27 C -0.130 4.130 28 C -0.142 4.142 29 C -0.115 4.115 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.127 0.873 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.248 0.752 40 H 0.149 0.851 41 H 0.155 0.845 42 H 0.147 0.853 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.903 11.849 10.661 24.726 hybrid contribution 0.547 -0.306 -0.762 0.987 sum -18.356 11.543 9.898 23.836 Atomic orbital electron populations 1.21862 0.98415 0.99075 1.00625 1.22024 0.92601 0.99265 1.03503 1.20737 0.95126 0.88765 0.78390 0.93454 1.21001 0.89572 1.39179 1.06344 0.91276 1.24882 0.99308 0.94700 0.95018 1.69871 1.35521 1.37701 1.09462 0.86326 0.83769 0.78533 0.77484 1.19894 1.21030 1.19966 1.86475 1.33423 1.61997 1.44349 1.23137 0.81433 0.77129 0.88918 1.90599 1.55685 1.58626 1.35597 1.20367 0.86364 0.97013 0.92093 0.86080 1.22072 1.04044 0.98147 0.97041 1.45712 1.18477 1.32387 1.39501 1.18252 0.87053 0.79392 0.81267 1.90816 1.55530 1.62806 1.33346 1.22909 0.96535 0.99565 1.03264 1.22360 0.93041 0.92765 0.96301 1.19069 0.94159 0.96757 0.97320 1.21497 0.93904 0.99660 0.96923 1.21137 0.96390 0.96550 0.99908 1.21329 0.99706 0.96303 0.95675 1.21124 0.94356 1.00270 0.98432 1.21405 0.96390 0.94929 0.98729 0.95021 0.94747 0.92831 0.93852 0.87254 0.92291 0.89698 0.91031 0.92000 0.75244 0.85119 0.84477 0.85300 0.85646 0.85914 0.85710 0.85392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.57 37.16 0.32 -2.65 16 2 C -0.14 -3.26 5.49 -26.73 -0.15 -3.41 16 3 C 0.22 5.73 2.25 -27.89 -0.06 5.67 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.37 8.90 -34.44 -0.31 -14.67 16 6 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.64 11.29 55.43 0.63 -24.01 16 9 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 10 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 O -0.35 -7.90 9.71 -39.27 -0.38 -8.28 16 14 C 0.45 8.91 5.78 36.01 0.21 9.11 16 15 O -0.51 -10.96 12.98 -18.75 -0.24 -11.20 16 16 C 0.15 2.31 3.09 -69.08 -0.21 2.10 16 17 H 0.12 1.95 7.58 -51.93 -0.39 1.55 16 18 C -0.15 -2.10 9.41 37.16 0.35 -1.75 16 19 N -0.71 -9.71 4.95 -56.32 -0.28 -9.99 16 20 C 0.55 7.48 7.71 -12.97 -0.10 7.38 16 21 O -0.55 -8.98 15.89 5.19 0.08 -8.90 16 22 C -0.20 -2.09 9.41 -37.51 -0.35 -2.45 16 23 C -0.02 -0.24 9.46 -37.16 -0.35 -0.59 16 24 C -0.07 -0.64 5.87 -105.06 -0.62 -1.25 16 25 C -0.10 -0.81 9.41 -39.11 -0.37 -1.18 16 26 C -0.12 -0.85 10.03 -39.65 -0.40 -1.25 16 27 C -0.11 -0.73 10.04 -39.46 -0.40 -1.13 16 28 C -0.12 -0.83 10.03 -39.65 -0.40 -1.22 16 29 C -0.10 -0.74 9.80 -39.11 -0.38 -1.12 16 30 H 0.03 0.62 6.06 -51.93 -0.31 0.31 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 1.17 7.80 -51.93 -0.40 0.76 16 33 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.11 2.87 5.95 -51.93 -0.31 2.56 16 35 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.08 1.16 8.11 -51.93 -0.42 0.74 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 39 H 0.41 5.20 7.77 -40.82 -0.32 4.88 16 40 H 0.13 1.05 6.07 -52.49 -0.32 0.73 16 41 H 0.14 1.36 7.52 -52.48 -0.39 0.97 16 42 H 0.13 0.86 6.17 -52.48 -0.32 0.54 16 43 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 44 H 0.12 0.54 8.06 -52.48 -0.42 0.11 16 45 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 46 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 387.32 15.07 5.84 5.84 Total: -1.00 -31.28 387.32 -9.19 -40.46 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.50 Total: 7.07 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -3.31 Total: -6.81 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.35 Total: -34.00 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.54 Total: -28.38 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.28 -9.19 -40.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492036349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.745 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds