Wall clock time and date at job start Tue Mar 31 2020 16:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 O 1.45200 * 109.46937 * 64.99847 * 3 2 1 14 14 C 1.34233 * 117.00487 * 270.00398 * 13 3 2 15 15 O 1.20827 * 119.99435 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00238 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.47135 * 59.99355 * 16 14 13 18 18 C 1.53003 * 109.46954 * 300.00084 * 16 14 13 19 19 N 1.46500 * 109.47234 * 180.02562 * 16 14 13 20 20 C 1.34774 * 119.99981 * 204.99979 * 19 16 14 21 21 O 1.21699 * 119.99791 * 359.97438 * 20 19 16 22 22 C 1.46423 * 120.00004 * 179.97438 * 20 19 16 23 23 C 1.34807 * 120.00167 * 179.97438 * 22 20 19 24 24 C 1.47206 * 120.00039 * 180.02562 * 23 22 20 25 25 C 1.39836 * 120.17239 * 359.71788 * 24 23 22 26 26 C 1.37894 * 119.82709 * 179.72570 * 25 24 23 27 27 C 1.38394 * 120.16977 * 0.58027 * 26 25 24 28 28 C 1.38407 * 120.34563 * 359.69675 * 27 26 25 29 29 C 1.37887 * 120.16911 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 35 35 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 36 36 H 1.08992 * 109.47424 * 59.99671 * 18 16 14 37 37 H 1.08994 * 109.47339 * 180.02562 * 18 16 14 38 38 H 1.09014 * 109.46670 * 300.00046 * 18 16 14 39 39 H 0.97001 * 119.99676 * 24.99450 * 19 16 14 40 40 H 1.08002 * 120.00164 * 0.02562 * 22 20 19 41 41 H 1.08004 * 119.99960 * 359.97438 * 23 22 20 42 42 H 1.08004 * 120.08173 * 0.02562 * 25 24 23 43 43 H 1.08004 * 119.91331 * 180.29151 * 26 25 24 44 44 H 1.08007 * 119.83143 * 179.71458 * 27 26 25 45 45 H 1.08001 * 119.91286 * 180.02562 * 28 27 26 46 46 H 1.08000 * 120.08276 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 8 1.6559 2.0916 1.2407 14 6 0.4727 2.7254 1.2561 15 8 -0.2189 2.7377 0.2653 16 6 0.0074 3.4225 2.5085 17 1 0.7245 4.1968 2.7811 18 6 -0.1028 2.4061 3.6469 19 7 -1.3032 4.0320 2.2700 20 6 -1.6976 5.0911 3.0044 21 8 -0.9650 5.5408 3.8659 22 6 -3.0073 5.7006 2.7656 23 6 -3.4020 6.7596 3.5005 24 6 -4.7190 7.3720 3.2608 25 6 -5.5611 6.8618 2.2678 26 6 -6.7957 7.4374 2.0532 27 6 -7.1970 8.5248 2.8094 28 6 -6.3668 9.0391 3.7902 29 6 -5.1322 8.4703 4.0213 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.8292 -0.0609 -2.9500 36 1 0.8720 1.9523 3.8244 37 1 -0.4397 2.9102 4.5526 38 1 -0.8200 1.6317 3.3742 39 1 -1.8872 3.6733 1.5835 40 1 -3.6576 5.3012 2.0013 41 1 -2.7523 7.1582 4.2656 42 1 -5.2473 6.0161 1.6739 43 1 -7.4491 7.0416 1.2898 44 1 -8.1633 8.9743 2.6335 45 1 -6.6873 9.8877 4.3765 46 1 -4.4857 8.8725 4.7872 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492036349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:23 Heat of formation + Delta-G solvation = -108.638935 kcal Electronic energy + Delta-G solvation = -27139.603455 eV Core-core repulsion = 23186.602083 eV Total energy + Delta-G solvation = -3953.001371 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.81662 -40.71797 -39.95377 -37.90456 -36.22554 -35.52948 -35.05874 -33.37717 -32.22934 -31.87891 -30.31537 -29.27682 -26.38690 -25.47623 -24.72173 -23.56272 -22.71308 -21.90676 -21.27847 -20.63320 -19.10669 -18.78518 -18.23022 -17.85601 -17.32744 -17.13617 -16.82869 -16.31558 -16.05791 -15.88774 -15.59672 -15.06994 -14.77531 -14.67425 -14.59524 -14.33462 -14.24906 -13.91164 -13.58403 -13.46217 -13.34131 -13.22933 -13.14054 -13.11741 -12.82870 -12.74442 -12.50997 -12.16817 -12.16416 -11.83897 -11.75641 -11.48306 -11.36705 -11.27780 -11.17456 -10.84555 -10.53134 -10.38782 -9.88260 -9.24178 -8.28173 -6.44593 -0.47159 0.49358 0.98923 1.20559 1.40667 1.44533 1.50107 1.58836 2.20663 2.27676 2.43825 2.97040 3.01529 3.51390 3.73729 3.82821 3.92916 4.00183 4.06828 4.14402 4.22662 4.35506 4.38753 4.40863 4.53468 4.53571 4.56154 4.65776 4.71842 4.83197 4.98066 5.03305 5.07674 5.12425 5.16458 5.16995 5.21729 5.26945 5.37963 5.50530 5.55205 5.59428 5.67123 5.67265 5.94467 6.04943 6.09572 6.38968 6.57748 6.87699 7.07061 7.26110 8.78008 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.023244 B = 0.001971 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.348395 B =14201.442757 C =14430.872646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 C 0.226 3.774 4 H 0.009 0.991 5 C -0.552 4.552 6 H 0.065 0.935 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.978 3.022 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.271 1.271 13 O -0.355 6.355 14 C 0.450 3.550 15 O -0.531 6.531 16 C 0.158 3.842 17 H 0.117 0.883 18 C -0.147 4.147 19 N -0.704 5.704 20 C 0.552 3.448 21 O -0.579 6.579 22 C -0.217 4.217 23 C -0.008 4.008 24 C -0.096 4.096 25 C -0.111 4.111 26 C -0.132 4.132 27 C -0.112 4.112 28 C -0.131 4.131 29 C -0.104 4.104 30 H 0.040 0.960 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.271 0.729 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.417 0.583 40 H 0.154 0.846 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.147 0.853 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.643 12.228 11.322 26.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 C 0.173 3.827 4 H 0.027 0.973 5 C -0.590 4.590 6 H 0.083 0.917 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.801 3.199 10 H -0.189 1.189 11 H -0.202 1.202 12 H -0.196 1.196 13 O -0.271 6.271 14 C 0.293 3.707 15 O -0.422 6.422 16 C 0.051 3.949 17 H 0.135 0.865 18 C -0.205 4.205 19 N -0.358 5.358 20 C 0.344 3.656 21 O -0.461 6.461 22 C -0.237 4.237 23 C -0.028 4.028 24 C -0.096 4.096 25 C -0.129 4.129 26 C -0.150 4.150 27 C -0.129 4.129 28 C -0.148 4.148 29 C -0.122 4.122 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.255 0.745 40 H 0.171 0.829 41 H 0.149 0.851 42 H 0.155 0.845 43 H 0.162 0.838 44 H 0.164 0.836 45 H 0.164 0.836 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -20.265 12.382 11.403 26.344 hybrid contribution 0.819 -0.340 -0.979 1.321 sum -19.445 12.042 10.424 25.135 Atomic orbital electron populations 1.21720 0.96000 1.00733 1.00272 1.21863 0.94724 0.97778 1.02418 1.20430 0.94466 0.89445 0.78355 0.97273 1.21302 0.90645 1.40085 1.06921 0.91700 1.25751 1.04028 0.93920 0.94402 1.69988 1.37393 1.37786 1.09790 0.85308 0.77978 0.78688 0.77901 1.18921 1.20192 1.19611 1.86459 1.35165 1.62648 1.42782 1.23914 0.80235 0.76458 0.90091 1.90588 1.55829 1.59085 1.36660 1.20317 0.87215 0.97025 0.90354 0.86514 1.22041 1.04335 0.97764 0.96383 1.45695 1.17639 1.32588 1.39874 1.18715 0.87793 0.78729 0.80401 1.90795 1.56789 1.63693 1.34851 1.22829 0.95484 1.00417 1.05014 1.22443 0.93310 0.91899 0.95124 1.19117 0.93955 0.97847 0.98682 1.21711 0.94317 1.00033 0.96807 1.21438 0.96306 0.96744 1.00463 1.21707 1.00542 0.95797 0.94902 1.21444 0.93926 1.00801 0.98671 1.21656 0.97133 0.94646 0.98792 0.94064 0.92025 0.94399 0.93471 0.89604 0.92009 0.89811 0.89897 0.91110 0.74532 0.82891 0.85135 0.84484 0.83848 0.83618 0.83567 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.37 8.57 71.98 0.62 -4.75 16 2 C -0.13 -6.32 5.49 30.59 0.17 -6.15 16 3 C 0.23 12.00 2.25 29.85 0.07 12.07 16 4 H 0.01 0.56 7.16 -2.39 -0.02 0.55 16 5 C -0.55 -30.97 8.90 25.60 0.23 -30.75 16 6 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 7 C 0.02 1.04 5.29 84.66 0.45 1.49 16 8 N -0.91 -51.41 11.29 21.45 0.24 -51.17 16 9 Si 0.98 42.70 29.54 68.60 2.03 44.73 16 10 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 11 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 13 O -0.36 -16.47 9.71 -51.44 -0.50 -16.97 16 14 C 0.45 17.92 5.78 71.24 0.41 18.33 16 15 O -0.53 -22.96 12.98 21.96 0.29 -22.67 16 16 C 0.16 4.90 3.09 44.25 0.14 5.04 16 17 H 0.12 3.79 7.58 -2.39 -0.02 3.77 16 18 C -0.15 -3.84 9.41 71.98 0.68 -3.16 16 19 N -0.70 -19.06 4.95 -450.33 -2.23 -21.29 16 20 C 0.55 14.84 7.71 86.37 0.67 15.50 16 21 O -0.58 -19.13 15.89 -4.34 -0.07 -19.20 16 22 C -0.22 -4.36 9.41 23.61 0.22 -4.13 16 23 C -0.01 -0.15 9.46 23.84 0.23 0.08 16 24 C -0.10 -1.58 5.87 -20.15 -0.12 -1.70 16 25 C -0.11 -1.61 9.41 22.57 0.21 -1.40 16 26 C -0.13 -1.57 10.03 22.23 0.22 -1.34 16 27 C -0.11 -1.17 10.04 22.35 0.22 -0.95 16 28 C -0.13 -1.45 10.03 22.23 0.22 -1.23 16 29 C -0.10 -1.45 9.80 22.57 0.22 -1.23 16 30 H 0.04 1.59 6.06 -2.39 -0.01 1.58 16 31 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.04 1.66 7.80 -2.38 -0.02 1.64 16 33 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.09 4.60 5.95 -2.39 -0.01 4.59 16 35 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 36 H 0.08 2.21 8.11 -2.39 -0.02 2.20 16 37 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.42 10.31 7.77 -92.71 -0.72 9.59 16 40 H 0.15 2.28 6.07 -2.91 -0.02 2.26 16 41 H 0.13 2.60 7.52 -2.91 -0.02 2.57 16 42 H 0.14 1.64 6.17 -2.91 -0.02 1.62 16 43 H 0.14 1.11 8.06 -2.91 -0.02 1.08 16 44 H 0.15 0.81 8.06 -2.91 -0.02 0.78 16 45 H 0.15 0.93 8.06 -2.91 -0.02 0.90 16 46 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -68.23 387.32 4.89 -63.35 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.28 Total: 27.51 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 4.85 Total: -4.28 kcal Atomic # 7 Polarization: -70.48 SS G_CDS: -1.99 Total: -72.46 kcal Atomic # 8 Polarization: -58.56 SS G_CDS: -0.28 Total: -58.85 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -68.23 4.89 -63.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492036349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.294 kcal (2) G-P(sol) polarization free energy of solvation -68.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds