Wall clock time and date at job start Tue Mar 31 2020 17:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35954 * 117.00337 * 2 1 4 4 C 1.38079 * 120.00008 * 0.23027 * 3 2 1 5 5 C 1.39972 * 119.84038 * 180.23305 * 4 3 2 6 6 C 1.46971 * 120.08187 * 179.78620 * 5 4 3 7 7 C 1.35019 * 119.99839 * 316.37505 * 6 5 4 8 8 C 1.46255 * 120.00540 * 348.67404 * 7 6 5 9 9 O 1.21727 * 119.99679 * 353.21479 * 8 7 6 10 10 N 1.34773 * 120.00106 * 173.20988 * 8 7 6 11 11 C 1.47016 * 125.65150 * 359.97438 * 10 8 7 12 12 C 1.54320 * 107.27448 * 178.97011 * 11 10 8 13 13 C 1.55161 * 102.94112 * 337.81064 * 12 11 10 14 14 H 1.08998 * 111.00217 * 277.42040 * 13 12 11 15 15 C 1.53003 * 111.03550 * 153.58829 * 13 12 11 16 16 C 1.47432 * 125.64648 * 180.02562 * 10 8 7 17 17 C 1.40034 * 119.84008 * 359.51774 * 5 4 3 18 18 C 1.37637 * 119.99903 * 0.25127 * 17 5 4 19 19 C 1.39058 * 120.16349 * 0.02562 * 18 17 5 20 20 O 1.35619 * 119.91825 * 180.02562 * 19 18 17 21 21 C 1.34757 * 117.00409 * 354.29304 * 20 19 18 22 22 H 1.08002 * 119.99542 * 5.06748 * 21 20 19 23 23 C 1.38705 * 120.00442 * 185.06348 * 21 20 19 24 24 N 1.31516 * 119.99616 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00231 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47323 * 90.00285 * 25 23 21 27 27 H 1.48502 * 109.47179 * 209.99745 * 25 23 21 28 28 H 1.48494 * 109.47112 * 329.99760 * 25 23 21 29 29 H 1.09001 * 109.47197 * 60.00103 * 1 2 3 30 30 H 1.09000 * 109.47462 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47137 * 300.00158 * 1 2 3 32 32 H 1.08007 * 120.07871 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.99573 * 136.36717 * 6 5 4 34 34 H 1.08004 * 119.99647 * 168.67448 * 7 6 5 35 35 H 1.08998 * 109.88206 * 298.39442 * 11 10 8 36 36 H 1.09009 * 109.88099 * 59.55618 * 11 10 8 37 37 H 1.09005 * 110.71963 * 96.17119 * 12 11 10 38 38 H 1.08996 * 110.72855 * 219.44506 * 12 11 10 39 39 H 1.09002 * 109.47151 * 306.32605 * 15 13 12 40 40 H 1.09002 * 109.47297 * 66.33059 * 15 13 12 41 41 H 1.09006 * 109.46699 * 186.32894 * 15 13 12 42 42 H 1.09006 * 110.36536 * 322.93713 * 16 10 8 43 43 H 1.08999 * 110.36513 * 85.14685 * 16 10 8 44 44 H 1.08001 * 119.99423 * 180.27371 * 17 5 4 45 45 H 1.08010 * 119.91963 * 180.02562 * 18 17 5 46 46 H 0.97002 * 120.00324 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2943 2.3694 0.0048 5 6 1.9333 3.6147 -0.0001 6 6 1.1381 4.8507 0.0002 7 6 0.0580 4.9588 -0.8028 8 6 -0.1810 3.9612 -1.8453 9 8 0.6543 3.1051 -2.0714 10 7 -1.3260 3.9898 -2.5556 11 6 -2.4149 4.9632 -2.3870 12 6 -3.5006 4.6213 -3.4290 13 6 -2.7133 3.8243 -4.5025 14 1 -2.2045 4.4967 -5.1932 15 6 -3.6332 2.8618 -5.2564 16 6 -1.6947 3.0495 -3.6296 17 6 3.3321 3.6802 0.0003 18 6 4.0752 2.5217 0.0003 19 6 3.4405 1.2844 -0.0006 20 8 4.1776 0.1460 0.0000 21 6 5.5131 0.2817 -0.1180 22 1 5.9572 1.2662 -0.1250 23 6 6.3173 -0.8428 -0.2302 24 7 5.7764 -2.0415 -0.2221 25 14 8.1686 -0.6546 -0.3930 26 1 8.7867 -0.6528 0.9573 27 1 8.7135 -1.7863 -1.1851 28 1 8.4776 0.6248 -1.0806 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 0.2156 2.3144 0.0090 33 1 1.4177 5.6724 0.6429 34 1 -0.6294 5.7820 -0.6753 35 1 -2.8285 4.8862 -1.3815 36 1 -2.0401 5.9722 -2.5596 37 1 -4.2805 4.0029 -2.9845 38 1 -3.9244 5.5297 -3.8569 39 1 -4.1618 2.2302 -4.5424 40 1 -4.3550 3.4320 -5.8411 41 1 -3.0380 2.2374 -5.9228 42 1 -0.8167 2.7824 -4.2178 43 1 -2.1551 2.1554 -3.2093 44 1 3.8277 4.6398 0.0009 45 1 5.1541 2.5736 0.0011 46 1 6.3388 -2.8280 -0.3002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492074736.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:22 Heat of formation + Delta-G solvation = -38.554375 kcal Electronic energy + Delta-G solvation = -28527.427864 eV Core-core repulsion = 24577.465587 eV Total energy + Delta-G solvation = -3949.962277 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.15349 -39.35384 -37.81307 -37.37852 -35.94491 -33.17055 -32.81134 -32.04920 -29.82386 -29.33170 -28.54519 -26.98706 -26.27109 -25.32302 -23.64166 -22.40927 -21.37887 -20.81674 -20.41755 -18.60473 -17.98101 -17.58243 -16.74594 -16.40993 -16.01730 -15.29766 -15.03855 -14.85050 -14.67701 -14.44554 -14.04163 -13.84235 -13.57471 -13.54687 -13.33158 -13.28410 -13.17152 -12.75157 -12.58068 -12.46945 -12.10938 -12.01419 -11.65148 -11.51406 -11.36227 -11.20899 -11.01888 -10.97043 -10.93786 -10.89786 -10.55922 -10.42880 -10.26541 -9.46844 -9.40188 -9.16188 -8.66075 -8.56987 -7.44316 -6.69963 -6.39801 -3.92676 1.20920 2.42967 2.65581 3.09460 3.16712 3.18223 3.22724 3.61459 4.00496 4.17456 4.18939 4.33410 4.52656 4.66730 4.92768 4.97118 5.09291 5.11751 5.13965 5.20716 5.29656 5.33983 5.42862 5.44196 5.55310 5.55841 5.64200 5.68222 5.71294 5.78099 5.81122 5.83301 5.85144 5.96395 6.00790 6.19027 6.29868 6.41399 6.55961 6.60482 6.76127 7.07729 7.23577 7.31998 7.44861 7.65509 7.74950 8.02045 8.34192 8.51200 9.04306 9.77731 10.77359 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017248 B = 0.002914 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.960741 B = 9608.088777 C =10142.496112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.304 6.304 3 C 0.045 3.955 4 C -0.079 4.079 5 C -0.158 4.158 6 C 0.025 3.975 7 C -0.261 4.261 8 C 0.553 3.447 9 O -0.507 6.507 10 N -0.626 5.626 11 C 0.104 3.896 12 C -0.128 4.128 13 C -0.107 4.107 14 H 0.083 0.917 15 C -0.141 4.141 16 C 0.111 3.889 17 C -0.065 4.065 18 C -0.230 4.230 19 C 0.153 3.847 20 O -0.158 6.158 21 C -0.389 4.389 22 H 0.094 0.906 23 C 0.039 3.961 24 N -0.854 5.854 25 Si 0.942 3.058 26 H -0.273 1.273 27 H -0.277 1.277 28 H -0.267 1.267 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.040 0.960 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.109 0.891 45 H 0.133 0.867 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.400 14.615 -4.437 23.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.218 6.218 3 C 0.000 4.000 4 C -0.098 4.098 5 C -0.159 4.159 6 C 0.006 3.994 7 C -0.282 4.282 8 C 0.345 3.655 9 O -0.383 6.383 10 N -0.363 5.363 11 C -0.020 4.020 12 C -0.166 4.166 13 C -0.126 4.126 14 H 0.101 0.899 15 C -0.199 4.199 16 C -0.012 4.012 17 C -0.083 4.083 18 C -0.250 4.250 19 C 0.097 3.903 20 O -0.060 6.060 21 C -0.465 4.465 22 H 0.111 0.889 23 C -0.166 4.166 24 N -0.488 5.488 25 Si 0.766 3.234 26 H -0.198 1.198 27 H -0.202 1.202 28 H -0.191 1.191 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.059 0.941 32 H 0.127 0.873 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.127 0.873 45 H 0.151 0.849 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.734 13.432 -4.506 22.699 hybrid contribution 0.480 0.498 -0.182 0.715 sum -17.254 13.930 -4.688 22.666 Atomic orbital electron populations 1.22809 0.80770 1.02456 1.00013 1.86200 1.19089 1.26525 1.90031 1.17955 0.89283 0.84423 1.08339 1.20501 0.97487 0.90661 1.01160 1.18048 0.92751 0.91428 1.13660 1.22335 0.90615 0.94693 0.91771 1.22601 1.02563 1.02377 1.00668 1.18210 0.79912 0.85126 0.82270 1.91026 1.42910 1.37109 1.67274 1.48489 1.18175 1.31815 1.37772 1.21953 0.87727 0.92985 0.99329 1.22728 0.97243 1.00844 0.95803 1.22367 0.96203 0.97556 0.96480 0.89854 1.21694 0.99047 0.98903 1.00215 1.22213 0.98208 0.92309 0.88482 1.20679 0.92167 0.97075 0.98423 1.20714 1.00340 0.90873 1.13063 1.18817 0.88227 0.87593 0.95620 1.83993 1.19453 1.25722 1.76851 1.21430 0.78674 0.94806 1.51578 0.88891 1.25334 1.00503 0.94230 0.96548 1.70057 1.36180 0.97645 1.44887 0.85701 0.80538 0.78473 0.78653 1.19844 1.20249 1.19106 0.93689 0.89349 0.94107 0.87320 0.85803 0.86201 0.91629 0.91664 0.90524 0.90193 0.92296 0.92222 0.92128 0.90461 0.91763 0.87342 0.84946 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 9.81 101.05 0.99 1.62 16 2 O -0.30 -7.39 10.28 -34.21 -0.35 -7.74 16 3 C 0.04 1.10 6.70 -39.13 -0.26 0.83 16 4 C -0.08 -1.64 5.59 -38.99 -0.22 -1.86 16 5 C -0.16 -3.02 4.54 -105.04 -0.48 -3.50 16 6 C 0.03 0.37 9.80 -37.19 -0.36 0.01 16 7 C -0.26 -3.51 9.41 -37.51 -0.35 -3.86 16 8 C 0.55 8.78 6.81 -13.04 -0.09 8.69 16 9 O -0.51 -10.44 12.44 5.16 0.06 -10.38 16 10 N -0.63 -7.79 3.33 -172.21 -0.57 -8.36 16 11 C 0.10 0.86 6.07 -3.07 -0.02 0.84 16 12 C -0.13 -0.82 6.42 -24.90 -0.16 -0.98 16 13 C -0.11 -0.83 3.64 -88.46 -0.32 -1.15 16 14 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 15 C -0.14 -0.90 9.30 37.16 0.35 -0.56 16 16 C 0.11 1.26 6.37 -2.52 -0.02 1.24 16 17 C -0.06 -1.29 9.78 -39.13 -0.38 -1.67 16 18 C -0.23 -5.37 9.14 -39.50 -0.36 -5.73 16 19 C 0.15 4.07 6.67 -38.77 -0.26 3.81 16 20 O -0.16 -4.84 9.52 -13.95 -0.13 -4.97 16 21 C -0.39 -11.34 9.48 30.91 0.29 -11.04 16 22 H 0.09 2.48 5.18 -52.49 -0.27 2.21 16 23 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 24 N -0.85 -25.96 13.67 55.48 0.76 -25.20 16 25 Si 0.94 21.07 29.55 -169.99 -5.02 16.05 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 29 H 0.04 0.77 7.67 -51.93 -0.40 0.38 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.04 0.64 7.65 -51.92 -0.40 0.24 16 32 H 0.11 2.09 5.25 -52.48 -0.28 1.81 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.12 1.20 7.37 -52.48 -0.39 0.81 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.49 8.12 -51.92 -0.42 0.07 16 37 H 0.08 0.45 8.02 -51.93 -0.42 0.03 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.37 8.11 -51.93 -0.42 -0.05 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 1.03 8.04 -51.93 -0.42 0.61 16 43 H 0.06 0.72 8.04 -51.93 -0.42 0.31 16 44 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 45 H 0.13 3.01 5.62 -52.48 -0.29 2.71 16 46 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 377.46 15.07 5.69 5.69 Total: -1.00 -36.13 377.46 -7.95 -44.08 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.64 Total: 3.14 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -1.75 Total: -12.30 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.19 Total: -33.56 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.42 Total: -23.09 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.13 -7.95 -44.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492074736.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.525 kcal (2) G-P(sol) polarization free energy of solvation -36.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds