Wall clock time and date at job start Tue Mar 31 2020 17:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35954 * 117.00337 * 2 1 4 4 C 1.38079 * 120.00008 * 0.23027 * 3 2 1 5 5 C 1.39972 * 119.84038 * 180.23305 * 4 3 2 6 6 C 1.46971 * 120.08187 * 179.78620 * 5 4 3 7 7 C 1.35019 * 119.99839 * 316.37505 * 6 5 4 8 8 C 1.46255 * 120.00540 * 348.67404 * 7 6 5 9 9 O 1.21727 * 119.99679 * 353.21479 * 8 7 6 10 10 N 1.34773 * 120.00106 * 173.20988 * 8 7 6 11 11 C 1.47016 * 125.65150 * 359.97438 * 10 8 7 12 12 C 1.54320 * 107.27448 * 178.97011 * 11 10 8 13 13 C 1.55161 * 102.94112 * 337.81064 * 12 11 10 14 14 H 1.08998 * 111.00217 * 277.42040 * 13 12 11 15 15 C 1.53003 * 111.03550 * 153.58829 * 13 12 11 16 16 C 1.47432 * 125.64648 * 180.02562 * 10 8 7 17 17 C 1.40034 * 119.84008 * 359.51774 * 5 4 3 18 18 C 1.37637 * 119.99903 * 0.25127 * 17 5 4 19 19 C 1.39058 * 120.16349 * 0.02562 * 18 17 5 20 20 O 1.35619 * 119.91825 * 180.02562 * 19 18 17 21 21 C 1.34757 * 117.00409 * 354.29304 * 20 19 18 22 22 H 1.08002 * 119.99542 * 5.06748 * 21 20 19 23 23 C 1.38705 * 120.00442 * 185.06348 * 21 20 19 24 24 N 1.31516 * 119.99616 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00231 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47323 * 90.00285 * 25 23 21 27 27 H 1.48502 * 109.47179 * 209.99745 * 25 23 21 28 28 H 1.48494 * 109.47112 * 329.99760 * 25 23 21 29 29 H 1.09001 * 109.47197 * 60.00103 * 1 2 3 30 30 H 1.09000 * 109.47462 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47137 * 300.00158 * 1 2 3 32 32 H 1.08007 * 120.07871 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.99573 * 136.36717 * 6 5 4 34 34 H 1.08004 * 119.99647 * 168.67448 * 7 6 5 35 35 H 1.08998 * 109.88206 * 298.39442 * 11 10 8 36 36 H 1.09009 * 109.88099 * 59.55618 * 11 10 8 37 37 H 1.09005 * 110.71963 * 96.17119 * 12 11 10 38 38 H 1.08996 * 110.72855 * 219.44506 * 12 11 10 39 39 H 1.09002 * 109.47151 * 306.32605 * 15 13 12 40 40 H 1.09002 * 109.47297 * 66.33059 * 15 13 12 41 41 H 1.09006 * 109.46699 * 186.32894 * 15 13 12 42 42 H 1.09006 * 110.36536 * 322.93713 * 16 10 8 43 43 H 1.08999 * 110.36513 * 85.14685 * 16 10 8 44 44 H 1.08001 * 119.99423 * 180.27371 * 17 5 4 45 45 H 1.08010 * 119.91963 * 180.02562 * 18 17 5 46 46 H 0.97002 * 120.00324 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2943 2.3694 0.0048 5 6 1.9333 3.6147 -0.0001 6 6 1.1381 4.8507 0.0002 7 6 0.0580 4.9588 -0.8028 8 6 -0.1810 3.9612 -1.8453 9 8 0.6543 3.1051 -2.0714 10 7 -1.3260 3.9898 -2.5556 11 6 -2.4149 4.9632 -2.3870 12 6 -3.5006 4.6213 -3.4290 13 6 -2.7133 3.8243 -4.5025 14 1 -2.2045 4.4967 -5.1932 15 6 -3.6332 2.8618 -5.2564 16 6 -1.6947 3.0495 -3.6296 17 6 3.3321 3.6802 0.0003 18 6 4.0752 2.5217 0.0003 19 6 3.4405 1.2844 -0.0006 20 8 4.1776 0.1460 0.0000 21 6 5.5131 0.2817 -0.1180 22 1 5.9572 1.2662 -0.1250 23 6 6.3173 -0.8428 -0.2302 24 7 5.7764 -2.0415 -0.2221 25 14 8.1686 -0.6546 -0.3930 26 1 8.7867 -0.6528 0.9573 27 1 8.7135 -1.7863 -1.1851 28 1 8.4776 0.6248 -1.0806 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 0.2156 2.3144 0.0090 33 1 1.4177 5.6724 0.6429 34 1 -0.6294 5.7820 -0.6753 35 1 -2.8285 4.8862 -1.3815 36 1 -2.0401 5.9722 -2.5596 37 1 -4.2805 4.0029 -2.9845 38 1 -3.9244 5.5297 -3.8569 39 1 -4.1618 2.2302 -4.5424 40 1 -4.3550 3.4320 -5.8411 41 1 -3.0380 2.2374 -5.9228 42 1 -0.8167 2.7824 -4.2178 43 1 -2.1551 2.1554 -3.2093 44 1 3.8277 4.6398 0.0009 45 1 5.1541 2.5736 0.0011 46 1 6.3388 -2.8280 -0.3002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492074736.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:21 Heat of formation + Delta-G solvation = -62.799082 kcal Electronic energy + Delta-G solvation = -28528.479193 eV Core-core repulsion = 24577.465587 eV Total energy + Delta-G solvation = -3951.013606 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.48637 -40.83534 -39.28464 -38.88890 -37.55658 -34.56225 -34.11269 -33.66345 -31.06866 -30.51198 -30.07821 -28.25807 -27.61590 -27.20186 -24.64282 -23.67516 -23.07728 -22.09754 -21.23041 -19.99161 -19.79645 -18.96417 -18.34608 -17.57119 -17.25402 -16.93888 -16.70169 -16.34606 -16.15879 -15.75745 -15.46504 -15.25446 -15.08784 -14.69725 -14.57580 -14.44277 -14.28659 -13.98346 -13.60838 -13.58526 -13.51577 -13.31434 -13.09498 -12.85813 -12.69242 -12.61175 -12.54561 -12.17839 -12.03966 -12.00753 -11.88238 -11.60746 -11.55845 -11.34909 -10.93976 -10.70886 -10.39485 -9.60324 -9.09205 -8.50096 -8.44736 -6.10551 -0.09924 0.68301 1.05530 1.33315 1.45407 1.52613 2.11894 2.17988 2.40731 2.57834 2.85633 3.15289 3.45076 3.46995 3.68982 3.89022 3.92530 3.98780 4.09291 4.22589 4.28071 4.30447 4.32220 4.42062 4.51867 4.54899 4.55966 4.61773 4.63219 4.73244 4.79425 4.85072 4.93388 5.01927 5.03545 5.10383 5.14761 5.18937 5.25097 5.28471 5.37306 5.46399 5.54659 5.64481 5.77735 5.97397 6.08271 6.61190 6.63205 6.97466 7.32114 7.82122 8.78112 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017248 B = 0.002914 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.960741 B = 9608.088777 C =10142.496112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.347 6.347 3 C 0.023 3.977 4 C -0.073 4.073 5 C -0.128 4.128 6 C 0.006 3.994 7 C -0.226 4.226 8 C 0.535 3.465 9 O -0.570 6.570 10 N -0.622 5.622 11 C 0.093 3.907 12 C -0.119 4.119 13 C -0.098 4.098 14 H 0.083 0.917 15 C -0.139 4.139 16 C 0.102 3.898 17 C -0.076 4.076 18 C -0.229 4.229 19 C 0.097 3.903 20 O -0.221 6.221 21 C -0.415 4.415 22 H 0.104 0.896 23 C -0.026 4.026 24 N -0.921 5.921 25 Si 1.024 2.976 26 H -0.259 1.259 27 H -0.271 1.271 28 H -0.252 1.252 29 H 0.044 0.956 30 H 0.112 0.888 31 H 0.062 0.938 32 H 0.125 0.875 33 H 0.176 0.824 34 H 0.171 0.829 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.044 0.956 43 H 0.060 0.940 44 H 0.153 0.847 45 H 0.129 0.871 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.276 19.768 -4.475 29.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.262 6.262 3 C -0.022 4.022 4 C -0.092 4.092 5 C -0.129 4.129 6 C -0.013 4.013 7 C -0.247 4.247 8 C 0.328 3.672 9 O -0.451 6.451 10 N -0.356 5.356 11 C -0.029 4.029 12 C -0.156 4.156 13 C -0.118 4.118 14 H 0.101 0.899 15 C -0.196 4.196 16 C -0.021 4.021 17 C -0.094 4.094 18 C -0.249 4.249 19 C 0.046 3.954 20 O -0.128 6.128 21 C -0.491 4.491 22 H 0.121 0.879 23 C -0.224 4.224 24 N -0.558 5.558 25 Si 0.842 3.158 26 H -0.184 1.184 27 H -0.196 1.196 28 H -0.175 1.175 29 H 0.063 0.937 30 H 0.130 0.870 31 H 0.081 0.919 32 H 0.143 0.857 33 H 0.193 0.807 34 H 0.189 0.811 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.124 0.876 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.171 0.829 45 H 0.147 0.853 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.723 18.682 -4.552 28.270 hybrid contribution 0.810 -0.725 -0.289 1.125 sum -19.913 17.957 -4.841 27.247 Atomic orbital electron populations 1.23082 0.77804 1.04449 1.00901 1.86133 1.22368 1.27395 1.90320 1.18361 0.89196 0.85652 1.08972 1.20753 0.98074 0.90349 1.00013 1.18716 0.93175 0.93029 1.08006 1.22623 0.90414 0.93959 0.94295 1.23046 1.01674 1.01948 0.98010 1.18872 0.80211 0.85096 0.83042 1.91026 1.45264 1.39629 1.69149 1.48615 1.18117 1.32250 1.36617 1.22336 0.86882 0.92642 1.01002 1.22753 0.96582 1.01797 0.94512 1.22326 0.95542 0.97447 0.96441 0.89874 1.21688 0.98975 0.98796 1.00173 1.22333 0.97988 0.93043 0.88771 1.21125 0.92698 0.97530 0.98036 1.20931 1.00616 0.91186 1.12150 1.19477 0.89423 0.88117 0.98386 1.83962 1.20080 1.27804 1.80944 1.21943 0.79082 0.95732 1.52380 0.87898 1.26717 1.06329 0.93465 0.95848 1.70224 1.38418 0.98751 1.48452 0.84533 0.72963 0.78999 0.79298 1.18373 1.19595 1.17532 0.93707 0.87019 0.91917 0.85682 0.80725 0.81144 0.89915 0.89742 0.89634 0.87569 0.92067 0.90335 0.93078 0.93707 0.92149 0.82928 0.85300 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.17 9.81 113.37 1.11 2.29 16 2 O -0.35 -18.06 10.28 -79.05 -0.81 -18.87 16 3 C 0.02 1.18 6.70 22.56 0.15 1.33 16 4 C -0.07 -3.04 5.59 22.65 0.13 -2.92 16 5 C -0.13 -4.64 4.54 -20.13 -0.09 -4.73 16 6 C 0.01 0.15 9.80 23.82 0.23 0.38 16 7 C -0.23 -4.83 9.41 23.61 0.22 -4.61 16 8 C 0.53 15.60 6.81 86.33 0.59 16.19 16 9 O -0.57 -23.38 12.44 -4.43 -0.06 -23.43 16 10 N -0.62 -13.72 3.33 -816.95 -2.72 -16.44 16 11 C 0.09 1.07 6.07 86.73 0.53 1.60 16 12 C -0.12 -0.96 6.42 31.78 0.20 -0.76 16 13 C -0.10 -1.28 3.64 -9.40 -0.03 -1.31 16 14 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 15 C -0.14 -1.47 9.30 71.98 0.67 -0.80 16 16 C 0.10 2.23 6.37 86.86 0.55 2.78 16 17 C -0.08 -2.91 9.78 22.56 0.22 -2.69 16 18 C -0.23 -11.14 9.14 22.32 0.20 -10.94 16 19 C 0.10 5.56 6.67 22.80 0.15 5.71 16 20 O -0.22 -14.89 9.52 -6.59 -0.06 -14.96 16 21 C -0.42 -26.18 9.48 67.93 0.64 -25.54 16 22 H 0.10 5.90 5.18 -2.91 -0.02 5.88 16 23 C -0.03 -1.61 5.49 84.85 0.47 -1.14 16 24 N -0.92 -60.53 13.67 21.62 0.30 -60.23 16 25 Si 1.02 45.47 29.55 68.60 2.03 47.50 16 26 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 28 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 29 H 0.04 1.59 7.67 -2.39 -0.02 1.57 16 30 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 31 H 0.06 1.95 7.65 -2.38 -0.02 1.93 16 32 H 0.13 4.69 5.25 -2.91 -0.02 4.68 16 33 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 34 H 0.17 2.01 7.37 -2.91 -0.02 1.99 16 35 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 0.72 8.12 -2.38 -0.02 0.71 16 37 H 0.09 0.60 8.02 -2.38 -0.02 0.58 16 38 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.06 0.63 8.11 -2.39 -0.02 0.61 16 40 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 42 H 0.04 1.26 8.04 -2.38 -0.02 1.24 16 43 H 0.06 1.35 8.04 -2.39 -0.02 1.33 16 44 H 0.15 4.45 8.06 -2.91 -0.02 4.43 16 45 H 0.13 6.16 5.62 -2.91 -0.02 6.15 16 46 H 0.27 16.29 8.31 -92.71 -0.77 15.52 16 Total: -1.00 -91.89 377.46 5.61 -86.28 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.99 Total: 25.31 kcal Atomic # 6 Polarization: -31.11 SS G_CDS: 5.95 Total: -25.16 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -2.42 Total: -76.67 kcal Atomic # 8 Polarization: -56.33 SS G_CDS: -0.93 Total: -57.26 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -91.89 5.61 -86.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492074736.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.483 kcal (2) G-P(sol) polarization free energy of solvation -91.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds