Wall clock time and date at job start Tue Mar 31 2020 17:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.48094 * 2 1 4 4 C 1.53091 * 109.48064 * 239.96103 * 2 1 3 5 5 C 1.53179 * 109.16218 * 182.41369 * 4 2 1 6 6 H 1.08999 * 109.54083 * 297.10950 * 5 4 2 7 7 N 1.46504 * 109.54264 * 176.84892 * 5 4 2 8 8 C 1.34767 * 119.99907 * 155.43844 * 7 5 4 9 9 O 1.21724 * 120.00569 * 359.97438 * 8 7 5 10 10 C 1.46258 * 120.00063 * 180.02562 * 8 7 5 11 11 C 1.35024 * 120.00459 * 173.21915 * 10 8 7 12 12 C 1.46963 * 119.99573 * 348.67724 * 11 10 8 13 13 C 1.40027 * 120.10190 * 316.41155 * 12 11 10 14 14 C 1.37599 * 119.89617 * 179.72047 * 13 12 11 15 15 C 1.39176 * 120.09919 * 0.53105 * 14 13 12 16 16 O 1.35573 * 119.89576 * 179.73698 * 15 14 13 17 17 C 1.34789 * 116.99821 * 174.38178 * 16 15 14 18 18 H 1.07993 * 119.99842 * 5.07029 * 17 16 15 19 19 C 1.38718 * 119.99528 * 185.06378 * 17 16 15 20 20 N 1.31510 * 119.99357 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00552 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47394 * 89.99460 * 21 19 17 23 23 H 1.48496 * 109.46944 * 209.99772 * 21 19 17 24 24 H 1.48503 * 109.46700 * 329.99862 * 21 19 17 25 25 C 1.39180 * 120.20693 * 359.76759 * 15 14 13 26 26 C 1.37600 * 120.09872 * 359.95412 * 25 15 14 27 27 C 1.53169 * 109.04074 * 56.97899 * 5 4 2 28 28 C 1.53095 * 109.16353 * 303.02097 * 27 5 4 29 29 O 1.42904 * 109.47886 * 120.01813 * 2 1 3 30 30 H 1.09003 * 109.46902 * 299.97857 * 1 2 3 31 31 H 1.08997 * 109.47592 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46963 * 59.98063 * 1 2 3 33 33 H 1.09003 * 109.51925 * 302.31618 * 4 2 1 34 34 H 1.08996 * 109.52192 * 62.50098 * 4 2 1 35 35 H 0.97000 * 119.99771 * 335.44326 * 7 5 4 36 36 H 1.08005 * 119.99939 * 353.20820 * 10 8 7 37 37 H 1.08002 * 119.99953 * 168.68381 * 11 10 8 38 38 H 1.08001 * 120.05071 * 359.97438 * 13 12 11 39 39 H 1.07993 * 119.94852 * 180.27397 * 14 13 12 40 40 H 0.97004 * 119.99951 * 180.02562 * 20 19 17 41 41 H 1.07990 * 119.94942 * 179.97438 * 25 15 14 42 42 H 1.07996 * 120.04675 * 180.02562 * 26 25 15 43 43 H 1.09000 * 109.52447 * 183.11199 * 27 5 4 44 44 H 1.09004 * 109.57411 * 62.95343 * 27 5 4 45 45 H 1.08998 * 109.48244 * 297.62509 * 28 27 5 46 46 H 1.09006 * 109.47940 * 177.58982 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7225 -1.2494 5 6 3.5711 -0.7712 -1.2119 6 1 3.9689 0.2432 -1.2408 7 7 4.0658 -1.5265 -2.3657 8 6 5.3110 -1.3061 -2.8317 9 8 6.0245 -0.4792 -2.2943 10 6 5.8047 -2.0596 -3.9838 11 6 6.9961 -1.7454 -4.5359 12 6 7.6802 -0.5034 -4.1496 13 6 6.9567 0.6897 -4.0323 14 6 7.6004 1.8489 -3.6647 15 6 8.9705 1.8390 -3.4204 16 8 9.6015 2.9847 -3.0636 17 6 10.9034 2.8872 -2.7281 18 1 11.4179 1.9432 -2.8296 19 6 11.5821 3.9997 -2.2527 20 7 12.8524 3.9047 -1.9259 21 14 10.6920 5.6325 -2.0768 22 1 10.0938 5.7266 -0.7209 23 1 11.6560 6.7452 -2.2708 24 1 9.6185 5.7235 -3.0988 25 6 9.6950 0.6568 -3.5418 26 6 9.0586 -0.5084 -3.9033 27 6 4.0176 -1.4601 0.0812 28 6 3.4307 -0.7092 1.2792 29 8 2.0065 -0.6740 1.1665 30 1 -0.3633 0.5135 0.8902 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5141 -0.8898 33 1 1.6442 -1.7377 -1.2706 34 1 1.7148 -0.1847 -2.1398 35 1 3.4970 -2.1851 -2.7942 36 1 5.2163 -2.8676 -4.3930 37 1 7.4463 -2.4068 -5.2615 38 1 5.8942 0.6991 -4.2261 39 1 7.0424 2.7686 -3.5697 40 1 13.3271 4.6825 -1.5931 41 1 10.7580 0.6540 -3.3516 42 1 9.6215 -1.4253 -3.9969 43 1 5.1058 -1.4499 0.1424 44 1 3.6620 -2.4906 0.0875 45 1 3.8192 0.3091 1.2958 46 1 3.7099 -1.2201 2.2008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492342521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:46 Heat of formation + Delta-G solvation = -62.135445 kcal Electronic energy + Delta-G solvation = -27933.766041 eV Core-core repulsion = 23982.781212 eV Total energy + Delta-G solvation = -3950.984829 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.33393 -39.37375 -38.72579 -36.72452 -35.18532 -33.13119 -33.08135 -32.32568 -31.59879 -30.22141 -28.41124 -27.77968 -25.46341 -24.48066 -23.28468 -22.15092 -21.88044 -20.83998 -20.69716 -19.22831 -17.83266 -17.41823 -16.88044 -16.58318 -16.47975 -15.67603 -15.21395 -14.84173 -14.79895 -14.49759 -14.25291 -13.92560 -13.79966 -13.75838 -13.51344 -13.22979 -12.92427 -12.81453 -12.65200 -12.58693 -12.26624 -12.18057 -12.09535 -11.74138 -11.45240 -11.38347 -11.17837 -10.96367 -10.77653 -10.68190 -10.64280 -10.15937 -9.95901 -9.52609 -9.43248 -9.23316 -9.04479 -8.76388 -8.02478 -6.99389 -6.42848 -4.06749 1.15794 2.31732 2.60253 3.18522 3.22475 3.26560 3.40822 3.49314 3.54981 4.23692 4.35483 4.53844 4.56098 4.60837 4.83236 4.88046 4.90445 4.93441 5.08753 5.13391 5.15194 5.19430 5.20776 5.31168 5.39117 5.49954 5.54238 5.63911 5.65668 5.68600 5.74713 5.82238 5.85618 6.00006 6.16780 6.24607 6.35028 6.48396 6.48948 6.65500 6.90980 6.96369 7.16735 7.30261 7.37160 7.60258 7.66338 7.83791 8.05541 8.46755 8.92360 9.56625 10.64530 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012270 B = 0.002891 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.359458 B = 9681.294899 C =11163.997580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.089 3.911 3 H 0.062 0.938 4 C -0.156 4.156 5 C 0.146 3.854 6 H 0.089 0.911 7 N -0.732 5.732 8 C 0.540 3.460 9 O -0.511 6.511 10 C -0.265 4.265 11 C 0.026 3.974 12 C -0.181 4.181 13 C 0.011 3.989 14 C -0.203 4.203 15 C 0.177 3.823 16 O -0.213 6.213 17 C -0.388 4.388 18 H 0.108 0.892 19 C 0.064 3.936 20 N -0.877 5.877 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.238 4.238 26 C -0.043 4.043 27 C -0.166 4.166 28 C 0.064 3.936 29 O -0.381 6.381 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.395 0.605 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.280 0.720 41 H 0.132 0.868 42 H 0.109 0.891 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.055 0.945 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.582 -12.390 -0.653 25.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.030 3.970 3 H 0.080 0.920 4 C -0.194 4.194 5 C 0.041 3.959 6 H 0.108 0.892 7 N -0.384 5.384 8 C 0.330 3.670 9 O -0.388 6.388 10 C -0.286 4.286 11 C 0.006 3.994 12 C -0.182 4.182 13 C -0.008 4.008 14 C -0.222 4.222 15 C 0.124 3.876 16 O -0.117 6.117 17 C -0.463 4.463 18 H 0.125 0.875 19 C -0.140 4.140 20 N -0.514 5.514 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.183 1.183 25 C -0.257 4.257 26 C -0.062 4.062 27 C -0.205 4.205 28 C -0.013 4.013 29 O -0.301 6.301 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.229 0.771 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.120 0.880 39 H 0.131 0.869 40 H 0.090 0.910 41 H 0.150 0.850 42 H 0.127 0.873 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -22.036 -11.488 -0.021 24.851 hybrid contribution -0.177 0.200 -0.211 0.341 sum -22.214 -11.287 -0.232 24.918 Atomic orbital electron populations 1.21760 0.92841 1.02927 1.02588 1.22036 0.95168 0.95243 0.84522 0.92044 1.22521 0.94971 1.02506 0.99390 1.20869 0.92896 0.96883 0.85252 0.89246 1.46037 1.15922 1.43301 1.33099 1.18519 0.81019 0.82738 0.84763 1.90991 1.54938 1.33340 1.59497 1.22623 1.00315 1.05197 1.00461 1.22356 0.91739 0.92751 0.92516 1.18351 0.93559 0.92722 1.13552 1.20432 0.96683 0.90961 0.92709 1.19992 0.91882 0.98799 1.11548 1.19269 0.91256 0.85709 0.91368 1.83506 1.25904 1.28491 1.73785 1.20832 0.81811 1.00255 1.43417 0.87461 1.24491 0.95126 0.99134 0.95253 1.69627 1.08288 1.31809 1.41719 0.86181 0.79697 0.81374 0.79682 1.19820 1.20737 1.18311 1.21070 1.01153 0.92634 1.10833 1.20800 0.92678 0.96797 0.95888 1.22603 1.02532 1.00399 0.94921 1.22560 0.80398 1.00107 0.98249 1.87921 1.21354 1.77914 1.42881 0.91675 0.91812 0.91022 0.90595 0.90264 0.77133 0.86091 0.85910 0.87979 0.86887 0.90991 0.85029 0.87325 0.89963 0.91110 0.92697 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.56 37.16 0.36 -0.59 16 2 C 0.09 0.75 3.26 -26.69 -0.09 0.66 16 3 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.16 -1.21 4.89 -26.59 -0.13 -1.34 16 5 C 0.15 1.51 2.54 -67.75 -0.17 1.34 16 6 H 0.09 1.15 7.59 -51.93 -0.39 0.76 16 7 N -0.73 -7.45 5.08 -55.07 -0.28 -7.73 16 8 C 0.54 7.42 6.74 -13.04 -0.09 7.33 16 9 O -0.51 -9.35 11.84 5.17 0.06 -9.29 16 10 C -0.26 -3.12 9.90 -37.50 -0.37 -3.49 16 11 C 0.03 0.35 9.80 -37.19 -0.36 -0.02 16 12 C -0.18 -3.20 4.54 -105.02 -0.48 -3.68 16 13 C 0.01 0.20 6.59 -39.14 -0.26 -0.06 16 14 C -0.20 -4.36 9.97 -39.47 -0.39 -4.75 16 15 C 0.18 4.30 6.66 -38.88 -0.26 4.04 16 16 O -0.21 -5.80 8.57 0.71 0.01 -5.79 16 17 C -0.39 -11.15 9.94 30.91 0.31 -10.84 16 18 H 0.11 3.14 5.41 -52.49 -0.28 2.86 16 19 C 0.06 1.81 5.49 -17.51 -0.10 1.71 16 20 N -0.88 -25.57 13.96 55.48 0.77 -24.79 16 21 Si 0.91 22.01 28.62 -169.99 -4.86 17.14 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.24 -5.37 9.14 -39.46 -0.36 -5.73 16 26 C -0.04 -0.82 9.78 -39.14 -0.38 -1.21 16 27 C -0.17 -1.73 5.71 -26.59 -0.15 -1.89 16 28 C 0.06 0.63 6.84 37.21 0.25 0.89 16 29 O -0.38 -3.97 10.41 -35.23 -0.37 -4.33 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.40 2.85 8.58 -40.82 -0.35 2.50 16 36 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 37 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.10 1.74 7.02 -52.49 -0.37 1.37 16 39 H 0.11 2.30 8.06 -52.49 -0.42 1.87 16 40 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.13 3.09 5.62 -52.49 -0.29 2.79 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 43 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 377.37 15.07 5.69 5.69 Total: -1.00 -32.75 377.37 -8.40 -41.16 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.75 Total: 5.58 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -2.67 Total: -17.63 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.49 Total: -32.52 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.30 Total: -19.41 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.86 Total: 17.14 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.75 -8.40 -41.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492342521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.978 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds