Wall clock time and date at job start Tue Mar 31 2020 17:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.48094 * 2 1 4 4 C 1.53091 * 109.48064 * 239.96103 * 2 1 3 5 5 C 1.53179 * 109.16218 * 182.41369 * 4 2 1 6 6 H 1.08999 * 109.54083 * 297.10950 * 5 4 2 7 7 N 1.46504 * 109.54264 * 176.84892 * 5 4 2 8 8 C 1.34767 * 119.99907 * 155.43844 * 7 5 4 9 9 O 1.21724 * 120.00569 * 359.97438 * 8 7 5 10 10 C 1.46258 * 120.00063 * 180.02562 * 8 7 5 11 11 C 1.35024 * 120.00459 * 173.21915 * 10 8 7 12 12 C 1.46963 * 119.99573 * 348.67724 * 11 10 8 13 13 C 1.40027 * 120.10190 * 316.41155 * 12 11 10 14 14 C 1.37599 * 119.89617 * 179.72047 * 13 12 11 15 15 C 1.39176 * 120.09919 * 0.53105 * 14 13 12 16 16 O 1.35573 * 119.89576 * 179.73698 * 15 14 13 17 17 C 1.34789 * 116.99821 * 174.38178 * 16 15 14 18 18 H 1.07993 * 119.99842 * 5.07029 * 17 16 15 19 19 C 1.38718 * 119.99528 * 185.06378 * 17 16 15 20 20 N 1.31510 * 119.99357 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00552 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47394 * 89.99460 * 21 19 17 23 23 H 1.48496 * 109.46944 * 209.99772 * 21 19 17 24 24 H 1.48503 * 109.46700 * 329.99862 * 21 19 17 25 25 C 1.39180 * 120.20693 * 359.76759 * 15 14 13 26 26 C 1.37600 * 120.09872 * 359.95412 * 25 15 14 27 27 C 1.53169 * 109.04074 * 56.97899 * 5 4 2 28 28 C 1.53095 * 109.16353 * 303.02097 * 27 5 4 29 29 O 1.42904 * 109.47886 * 120.01813 * 2 1 3 30 30 H 1.09003 * 109.46902 * 299.97857 * 1 2 3 31 31 H 1.08997 * 109.47592 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46963 * 59.98063 * 1 2 3 33 33 H 1.09003 * 109.51925 * 302.31618 * 4 2 1 34 34 H 1.08996 * 109.52192 * 62.50098 * 4 2 1 35 35 H 0.97000 * 119.99771 * 335.44326 * 7 5 4 36 36 H 1.08005 * 119.99939 * 353.20820 * 10 8 7 37 37 H 1.08002 * 119.99953 * 168.68381 * 11 10 8 38 38 H 1.08001 * 120.05071 * 359.97438 * 13 12 11 39 39 H 1.07993 * 119.94852 * 180.27397 * 14 13 12 40 40 H 0.97004 * 119.99951 * 180.02562 * 20 19 17 41 41 H 1.07990 * 119.94942 * 179.97438 * 25 15 14 42 42 H 1.07996 * 120.04675 * 180.02562 * 26 25 15 43 43 H 1.09000 * 109.52447 * 183.11199 * 27 5 4 44 44 H 1.09004 * 109.57411 * 62.95343 * 27 5 4 45 45 H 1.08998 * 109.48244 * 297.62509 * 28 27 5 46 46 H 1.09006 * 109.47940 * 177.58982 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7225 -1.2494 5 6 3.5711 -0.7712 -1.2119 6 1 3.9689 0.2432 -1.2408 7 7 4.0658 -1.5265 -2.3657 8 6 5.3110 -1.3061 -2.8317 9 8 6.0245 -0.4792 -2.2943 10 6 5.8047 -2.0596 -3.9838 11 6 6.9961 -1.7454 -4.5359 12 6 7.6802 -0.5034 -4.1496 13 6 6.9567 0.6897 -4.0323 14 6 7.6004 1.8489 -3.6647 15 6 8.9705 1.8390 -3.4204 16 8 9.6015 2.9847 -3.0636 17 6 10.9034 2.8872 -2.7281 18 1 11.4179 1.9432 -2.8296 19 6 11.5821 3.9997 -2.2527 20 7 12.8524 3.9047 -1.9259 21 14 10.6920 5.6325 -2.0768 22 1 10.0938 5.7266 -0.7209 23 1 11.6560 6.7452 -2.2708 24 1 9.6185 5.7235 -3.0988 25 6 9.6950 0.6568 -3.5418 26 6 9.0586 -0.5084 -3.9033 27 6 4.0176 -1.4601 0.0812 28 6 3.4307 -0.7092 1.2792 29 8 2.0065 -0.6740 1.1665 30 1 -0.3633 0.5135 0.8902 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5141 -0.8898 33 1 1.6442 -1.7377 -1.2706 34 1 1.7148 -0.1847 -2.1398 35 1 3.4970 -2.1851 -2.7942 36 1 5.2163 -2.8676 -4.3930 37 1 7.4463 -2.4068 -5.2615 38 1 5.8942 0.6991 -4.2261 39 1 7.0424 2.7686 -3.5697 40 1 13.3271 4.6825 -1.5931 41 1 10.7580 0.6540 -3.3516 42 1 9.6215 -1.4253 -3.9969 43 1 5.1058 -1.4499 0.1424 44 1 3.6620 -2.4906 0.0875 45 1 3.8192 0.3091 1.2958 46 1 3.7099 -1.2201 2.2008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492342521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:45 Heat of formation + Delta-G solvation = -83.922156 kcal Electronic energy + Delta-G solvation = -27934.710784 eV Core-core repulsion = 23982.781212 eV Total energy + Delta-G solvation = -3951.929571 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.36310 -40.79099 -39.98680 -38.29910 -36.21842 -34.65488 -34.11122 -33.76670 -32.57711 -31.86715 -29.80458 -28.58233 -27.34599 -25.47639 -24.29370 -23.65371 -23.09949 -22.07356 -21.55664 -20.44261 -19.69628 -19.14143 -18.15708 -17.38717 -17.30541 -16.69751 -16.57084 -16.20157 -16.07179 -15.74116 -15.70388 -15.31302 -15.28046 -15.00958 -14.61540 -14.47813 -14.26856 -14.24410 -14.02599 -13.73781 -13.49949 -13.18660 -13.12818 -12.87076 -12.70558 -12.51231 -12.42354 -12.29419 -12.10037 -11.97570 -11.96004 -11.43847 -11.35034 -11.05212 -10.85072 -10.48835 -10.44962 -10.05083 -9.59245 -8.61922 -8.53339 -6.24308 -0.04297 0.67020 1.08088 1.27273 1.33585 1.48599 2.25369 2.28258 2.47171 2.78084 2.78649 3.03506 3.21702 3.62819 3.76746 3.87262 3.95644 4.02373 4.06174 4.10504 4.13990 4.17842 4.35228 4.44521 4.49906 4.52543 4.57979 4.68407 4.74043 4.76986 4.81702 4.92072 4.97221 4.99711 5.05300 5.17140 5.18079 5.22421 5.31349 5.39746 5.44034 5.55974 5.66749 5.76814 5.81860 5.89200 6.22383 6.25118 6.72139 6.80858 7.45090 7.56642 8.58365 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012270 B = 0.002891 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.359458 B = 9681.294899 C =11163.997580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.079 3.921 3 H 0.053 0.947 4 C -0.143 4.143 5 C 0.144 3.856 6 H 0.059 0.941 7 N -0.710 5.710 8 C 0.527 3.473 9 O -0.565 6.565 10 C -0.226 4.226 11 C 0.000 4.000 12 C -0.150 4.150 13 C 0.012 3.988 14 C -0.209 4.209 15 C 0.133 3.867 16 O -0.244 6.244 17 C -0.401 4.401 18 H 0.082 0.918 19 C 0.011 3.989 20 N -0.921 5.921 21 Si 0.970 3.030 22 H -0.268 1.268 23 H -0.262 1.262 24 H -0.265 1.265 25 C -0.253 4.253 26 C -0.053 4.053 27 C -0.159 4.159 28 C 0.065 3.935 29 O -0.392 6.392 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.416 0.584 36 H 0.175 0.825 37 H 0.167 0.833 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.286 0.714 41 H 0.109 0.891 42 H 0.142 0.858 43 H 0.054 0.946 44 H 0.083 0.917 45 H 0.043 0.957 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.858 -15.215 -2.095 30.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.021 3.979 3 H 0.071 0.929 4 C -0.181 4.181 5 C 0.039 3.961 6 H 0.077 0.923 7 N -0.362 5.362 8 C 0.318 3.682 9 O -0.446 6.446 10 C -0.247 4.247 11 C -0.019 4.019 12 C -0.150 4.150 13 C -0.006 4.006 14 C -0.229 4.229 15 C 0.084 3.916 16 O -0.151 6.151 17 C -0.477 4.477 18 H 0.099 0.901 19 C -0.187 4.187 20 N -0.561 5.561 21 Si 0.792 3.208 22 H -0.193 1.193 23 H -0.186 1.186 24 H -0.189 1.189 25 C -0.272 4.272 26 C -0.071 4.071 27 C -0.198 4.198 28 C -0.013 4.013 29 O -0.312 6.312 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.253 0.747 36 H 0.192 0.808 37 H 0.184 0.816 38 H 0.143 0.857 39 H 0.134 0.866 40 H 0.095 0.905 41 H 0.126 0.874 42 H 0.160 0.840 43 H 0.073 0.927 44 H 0.102 0.898 45 H 0.062 0.938 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -26.390 -14.381 -1.489 30.091 hybrid contribution 0.759 0.658 0.198 1.024 sum -25.631 -13.724 -1.290 29.103 Atomic orbital electron populations 1.21762 0.91086 1.03487 1.03343 1.22248 0.96532 0.94813 0.84281 0.92916 1.22443 0.92479 1.03624 0.99573 1.20859 0.94731 0.95315 0.85206 0.92264 1.45869 1.15052 1.42859 1.32420 1.19097 0.81563 0.82333 0.85246 1.90999 1.56612 1.35796 1.61163 1.23086 0.99026 1.04654 0.97914 1.22574 0.92391 0.91849 0.95089 1.18917 0.92968 0.94539 1.08626 1.20727 0.97690 0.90436 0.91766 1.20234 0.90842 1.00260 1.11527 1.19745 0.92548 0.85852 0.93502 1.83451 1.24937 1.29934 1.76815 1.20759 0.82929 0.99756 1.44288 0.90071 1.25283 0.95898 1.02467 0.95076 1.69704 1.09570 1.33081 1.43793 0.85240 0.78590 0.77574 0.79426 1.19272 1.18639 1.18896 1.21113 1.00342 0.93911 1.11849 1.21158 0.93902 0.96620 0.95463 1.22508 1.00763 1.01172 0.95340 1.22544 0.80524 0.99595 0.98595 1.87916 1.21136 1.78127 1.43976 0.92030 0.91288 0.89252 0.88906 0.88780 0.74713 0.80812 0.81570 0.85669 0.86572 0.90461 0.87358 0.84019 0.92673 0.89837 0.93816 0.87507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.56 71.98 0.69 -0.77 16 2 C 0.08 1.18 3.26 30.62 0.10 1.28 16 3 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.14 -1.77 4.89 30.68 0.15 -1.62 16 5 C 0.14 2.69 2.54 45.11 0.11 2.80 16 6 H 0.06 1.51 7.59 -2.39 -0.02 1.49 16 7 N -0.71 -11.66 5.08 -446.36 -2.27 -13.93 16 8 C 0.53 12.55 6.74 86.33 0.58 13.14 16 9 O -0.57 -19.88 11.84 -4.43 -0.05 -19.94 16 10 C -0.23 -3.95 9.90 23.62 0.23 -3.72 16 11 C 0.00 0.01 9.80 23.82 0.23 0.24 16 12 C -0.15 -4.95 4.54 -20.12 -0.09 -5.04 16 13 C 0.01 0.44 6.59 22.55 0.15 0.59 16 14 C -0.21 -9.25 9.97 22.34 0.22 -9.03 16 15 C 0.13 6.85 6.66 22.72 0.15 7.00 16 16 O -0.24 -14.25 8.57 -20.38 -0.17 -14.42 16 17 C -0.40 -24.88 9.94 67.93 0.68 -24.21 16 18 H 0.08 5.26 5.41 -2.91 -0.02 5.24 16 19 C 0.01 0.68 5.49 84.86 0.47 1.15 16 20 N -0.92 -56.65 13.96 21.62 0.30 -56.35 16 21 Si 0.97 47.43 28.62 68.60 1.96 49.39 16 22 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 23 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.26 -13.00 7.11 99.48 0.71 -12.29 16 25 C -0.25 -12.08 9.14 22.35 0.20 -11.88 16 26 C -0.05 -2.00 9.78 22.55 0.22 -1.78 16 27 C -0.16 -3.13 5.71 30.68 0.18 -2.96 16 28 C 0.06 1.24 6.84 72.01 0.49 1.73 16 29 O -0.39 -7.56 10.41 -148.98 -1.55 -9.11 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.42 3.63 8.58 -92.71 -0.80 2.84 16 36 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 37 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 38 H 0.13 3.95 7.02 -2.91 -0.02 3.93 16 39 H 0.12 4.90 8.06 -2.91 -0.02 4.87 16 40 H 0.29 16.04 8.31 -92.71 -0.77 15.27 16 41 H 0.11 5.59 5.62 -2.92 -0.02 5.58 16 42 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 43 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 45 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -78.94 377.37 3.18 -75.76 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.20 Total: 21.66 kcal Atomic # 6 Polarization: -37.84 SS G_CDS: 4.77 Total: -33.07 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -1.97 Total: -70.27 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -1.78 Total: -43.47 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.96 Total: 49.39 kcal Total: -78.94 3.18 -75.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492342521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.163 kcal (2) G-P(sol) polarization free energy of solvation -78.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds