Wall clock time and date at job start Tue Mar 31 2020 17:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.98805 * 2 1 4 4 O 1.43745 * 109.87652 * 238.91977 * 2 1 3 5 5 C 1.44374 * 106.97626 * 267.08525 * 4 2 1 6 6 C 1.54993 * 103.49128 * 319.94204 * 5 4 2 7 7 C 1.54098 * 109.88133 * 121.08767 * 2 1 3 8 8 C 1.52998 * 110.48860 * 236.20163 * 7 2 1 9 9 N 1.46500 * 110.48855 * 358.72123 * 7 2 1 10 10 C 1.34771 * 120.00322 * 180.02562 * 9 7 2 11 11 O 1.21731 * 119.99838 * 359.97438 * 10 9 7 12 12 C 1.46249 * 120.00473 * 179.97438 * 10 9 7 13 13 C 1.35018 * 120.00301 * 173.67196 * 12 10 9 14 14 C 1.46968 * 120.00039 * 348.61834 * 13 12 10 15 15 C 1.40021 * 120.09756 * 314.87766 * 14 13 12 16 16 C 1.37596 * 119.89266 * 179.97438 * 15 14 13 17 17 C 1.39178 * 120.10628 * 359.97438 * 16 15 14 18 18 O 1.35565 * 119.89936 * 179.97438 * 17 16 15 19 19 C 1.34779 * 117.00308 * 1.45682 * 18 17 16 20 20 H 1.08002 * 119.99944 * 355.07701 * 19 18 17 21 21 C 1.38715 * 119.99876 * 174.80553 * 19 18 17 22 22 N 1.31504 * 120.00434 * 0.27504 * 21 19 18 23 23 Si 1.86800 * 119.99886 * 180.27245 * 21 19 18 24 24 H 1.48502 * 109.47035 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47238 * 120.00148 * 23 21 19 26 26 H 1.48498 * 109.47542 * 240.00136 * 23 21 19 27 27 C 1.39182 * 120.19616 * 0.25336 * 17 16 15 28 28 C 1.37597 * 120.10335 * 359.49050 * 27 17 16 29 29 H 1.08993 * 109.46970 * 298.91077 * 1 2 3 30 30 H 1.08994 * 109.47465 * 58.91479 * 1 2 3 31 31 H 1.09004 * 109.47063 * 178.91434 * 1 2 3 32 32 H 1.09000 * 110.61851 * 78.44510 * 5 4 2 33 33 H 1.09003 * 110.62258 * 201.28136 * 5 4 2 34 34 H 1.09001 * 110.90707 * 278.82398 * 6 5 4 35 35 H 1.09006 * 110.90859 * 155.22407 * 6 5 4 36 36 H 1.09000 * 109.47545 * 181.84257 * 8 7 2 37 37 H 1.09003 * 109.47201 * 301.84627 * 8 7 2 38 38 H 1.09005 * 109.46972 * 61.84228 * 8 7 2 39 39 H 0.97006 * 119.99798 * 359.97438 * 9 7 2 40 40 H 1.08000 * 119.99790 * 353.67129 * 12 10 9 41 41 H 1.08003 * 120.00378 * 168.62431 * 13 12 10 42 42 H 1.07999 * 120.05599 * 359.94818 * 15 14 13 43 43 H 1.08004 * 119.94852 * 180.02562 * 16 15 14 44 44 H 0.97002 * 120.00235 * 179.97438 * 22 21 19 45 45 H 1.08007 * 119.94386 * 179.74468 * 27 17 16 46 46 H 1.07997 * 120.04660 * 180.27805 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0187 -0.6979 -1.1578 5 6 2.2281 -2.0713 -0.7649 6 6 2.8325 -1.9524 0.6573 7 6 2.0541 -0.7483 1.2410 8 6 2.9859 0.1516 2.0551 9 7 0.9382 -1.2119 2.0693 10 6 1.1808 -1.8918 3.2075 11 8 2.3271 -2.1209 3.5470 12 6 0.0669 -2.3542 4.0347 13 6 0.3026 -3.1432 5.1046 14 6 1.6309 -3.7419 5.2978 15 6 2.2954 -4.3393 4.2198 16 6 3.5390 -4.8980 4.4053 17 6 4.1368 -4.8696 5.6618 18 8 5.3620 -5.4218 5.8400 19 6 5.9572 -5.9538 4.7540 20 1 5.4259 -5.9992 3.8148 21 6 7.2542 -6.4380 4.8413 22 7 7.9011 -6.3828 5.9849 23 14 8.0819 -7.1683 3.3344 24 1 7.1479 -7.1131 2.1811 25 1 9.3066 -6.3909 3.0166 26 1 8.4493 -8.5810 3.6072 27 6 3.4779 -4.2811 6.7373 28 6 2.2363 -3.7152 6.5601 29 1 -0.3633 0.4968 0.8995 30 1 -0.3634 0.5306 -0.8800 31 1 -0.3633 -1.0275 -0.0195 32 1 1.2814 -2.6107 -0.7358 33 1 2.9274 -2.5619 -1.4420 34 1 3.9003 -1.7390 0.6096 35 1 2.6433 -2.8559 1.2372 36 1 3.3722 -0.4037 2.9098 37 1 3.8160 0.4771 1.4280 38 1 2.4334 1.0227 2.4074 39 1 0.0247 -1.0290 1.7990 40 1 -0.9442 -2.0644 3.7897 41 1 -0.4849 -3.3346 5.8185 42 1 1.8324 -4.3618 3.2443 43 1 4.0526 -5.3587 3.5742 44 1 8.8080 -6.7217 6.0460 45 1 3.9438 -4.2650 7.7116 46 1 1.7278 -3.2548 7.3942 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492496290.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:40 Heat of formation + Delta-G solvation = -44.211428 kcal Electronic energy + Delta-G solvation = -28941.721543 eV Core-core repulsion = 24991.513958 eV Total energy + Delta-G solvation = -3950.207585 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.89305 -39.24731 -38.49429 -36.53005 -34.91183 -33.10757 -32.20435 -31.67019 -31.17620 -30.09342 -28.81163 -28.00756 -25.37882 -24.67712 -23.62636 -22.09123 -21.79520 -21.22038 -19.65473 -19.18667 -17.98403 -17.45213 -16.92047 -16.67068 -16.34778 -14.91635 -14.86307 -14.71239 -14.48118 -14.43499 -14.11359 -13.80598 -13.61335 -13.49696 -13.47065 -13.13444 -12.96264 -12.78978 -12.64609 -12.45600 -12.19590 -12.12818 -11.78091 -11.67682 -11.34950 -11.30803 -11.21412 -10.97946 -10.76422 -10.73876 -10.59002 -10.42075 -9.88254 -9.43879 -9.32630 -9.17806 -8.98301 -8.69723 -7.92802 -6.88023 -6.46616 -4.01972 1.24541 2.40932 2.68257 3.12962 3.14337 3.19450 3.24230 3.60548 3.67157 3.96580 4.24832 4.55324 4.65376 4.68458 4.85258 4.94032 5.04089 5.09174 5.12174 5.17026 5.20729 5.31721 5.36904 5.49436 5.58464 5.63144 5.70441 5.72745 5.75974 5.79716 5.84637 5.89622 6.06688 6.23614 6.28006 6.35440 6.42124 6.49521 6.60240 6.74510 6.77915 7.02770 7.12259 7.32422 7.46483 7.50103 7.66820 7.91383 8.00429 8.55248 8.99496 9.71054 10.71375 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011693 B = 0.003684 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.108213 B = 7597.804360 C = 9386.802838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.072 3.928 3 H 0.102 0.898 4 O -0.370 6.370 5 C 0.044 3.956 6 C -0.154 4.154 7 C 0.153 3.847 8 C -0.159 4.159 9 N -0.731 5.731 10 C 0.539 3.461 11 O -0.504 6.504 12 C -0.267 4.267 13 C 0.028 3.972 14 C -0.188 4.188 15 C 0.014 3.986 16 C -0.243 4.243 17 C 0.171 3.829 18 O -0.173 6.173 19 C -0.389 4.389 20 H 0.094 0.906 21 C 0.039 3.961 22 N -0.860 5.860 23 Si 0.941 3.059 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.209 4.209 28 C -0.045 4.045 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.397 0.603 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.095 0.905 43 H 0.123 0.877 44 H 0.270 0.730 45 H 0.115 0.885 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.640 10.925 -10.069 22.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.014 3.986 3 H 0.120 0.880 4 O -0.289 6.289 5 C -0.032 4.032 6 C -0.193 4.193 7 C 0.066 3.934 8 C -0.217 4.217 9 N -0.388 5.388 10 C 0.329 3.671 11 O -0.380 6.380 12 C -0.289 4.289 13 C 0.008 3.992 14 C -0.189 4.189 15 C -0.004 4.004 16 C -0.262 4.262 17 C 0.116 3.884 18 O -0.075 6.075 19 C -0.465 4.465 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.494 5.494 23 Si 0.765 3.235 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.228 4.228 28 C -0.063 4.063 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.235 0.765 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.113 0.887 43 H 0.141 0.859 44 H 0.080 0.920 45 H 0.133 0.867 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.372 10.751 -9.751 21.141 hybrid contribution -0.201 -0.239 -0.789 0.848 sum -15.572 10.512 -10.540 21.543 Atomic orbital electron populations 1.22282 0.95921 1.02749 1.02828 1.23003 0.93975 0.97077 0.84553 0.87986 1.88922 1.86002 1.21246 1.32697 1.23613 0.99912 0.83797 0.95899 1.23481 1.00853 0.99414 0.95549 1.21463 0.87443 0.94057 0.90436 1.22193 0.98646 0.98855 1.01984 1.46437 1.09058 1.59192 1.24146 1.18484 0.90130 0.78128 0.80364 1.90968 1.22242 1.54633 1.70108 1.22615 0.97620 1.07328 1.01292 1.22332 0.95462 0.88398 0.92991 1.18269 0.96193 1.09879 0.94525 1.20506 0.92939 0.91779 0.95192 1.20941 0.97518 1.09930 0.97798 1.19527 0.86125 0.89779 0.92957 1.83907 1.24845 1.62777 1.35972 1.21431 0.97393 1.38373 0.89274 0.88882 1.25312 0.95416 0.97242 0.98551 1.70027 1.12079 1.42953 1.24364 0.85650 0.79304 0.78629 0.79891 1.19050 1.20083 1.20091 1.19989 0.96978 1.07914 0.97951 1.20605 0.94176 0.96509 0.95051 0.91039 0.91182 0.91742 0.92358 0.88748 0.89518 0.89012 0.89083 0.91789 0.92736 0.76467 0.86364 0.86148 0.88676 0.85885 0.92003 0.86710 0.87253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 8.10 37.16 0.30 -0.99 16 2 C 0.07 0.69 3.76 -26.16 -0.10 0.59 16 3 H 0.10 0.89 7.69 -51.93 -0.40 0.49 16 4 O -0.37 -4.23 11.19 -35.23 -0.39 -4.62 16 5 C 0.04 0.47 7.66 38.21 0.29 0.76 16 6 C -0.15 -1.92 5.95 -24.72 -0.15 -2.07 16 7 C 0.15 1.71 0.93 -130.29 -0.12 1.59 16 8 C -0.16 -1.93 8.16 37.16 0.30 -1.63 16 9 N -0.73 -7.84 4.84 -47.62 -0.23 -8.07 16 10 C 0.54 7.50 6.05 -13.04 -0.08 7.42 16 11 O -0.50 -9.08 9.25 5.16 0.05 -9.03 16 12 C -0.27 -3.23 9.91 -37.51 -0.37 -3.60 16 13 C 0.03 0.37 9.79 -37.19 -0.36 0.01 16 14 C -0.19 -3.35 4.47 -105.03 -0.47 -3.82 16 15 C 0.01 0.28 6.64 -39.15 -0.26 0.02 16 16 C -0.24 -5.54 9.14 -39.47 -0.36 -5.90 16 17 C 0.17 4.28 6.67 -38.88 -0.26 4.02 16 18 O -0.17 -5.03 9.74 0.76 0.01 -5.03 16 19 C -0.39 -11.04 9.48 30.91 0.29 -10.75 16 20 H 0.09 2.47 5.17 -52.49 -0.27 2.20 16 21 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 22 N -0.86 -25.41 13.67 55.48 0.76 -24.65 16 23 Si 0.94 20.76 29.55 -169.99 -5.02 15.74 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 27 C -0.21 -4.60 9.97 -39.47 -0.39 -4.99 16 28 C -0.04 -0.84 9.78 -39.15 -0.38 -1.22 16 29 H 0.07 0.42 7.28 -51.93 -0.38 0.04 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.46 7.39 -51.93 -0.38 0.07 16 32 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 1.13 7.87 -51.93 -0.41 0.72 16 35 H 0.09 1.33 6.96 -51.93 -0.36 0.97 16 36 H 0.09 1.43 6.05 -51.93 -0.31 1.11 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.40 3.22 5.27 -40.82 -0.22 3.00 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 42 H 0.10 1.71 7.18 -52.49 -0.38 1.34 16 43 H 0.12 2.84 5.60 -52.48 -0.29 2.55 16 44 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.11 2.43 8.06 -52.48 -0.42 2.01 16 46 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -32.87 369.22 -7.83 -40.70 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.34 Total: 8.95 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -2.21 Total: -19.56 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.53 Total: -32.72 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.34 Total: -18.68 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.87 -7.83 -40.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492496290.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.512 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds