Wall clock time and date at job start Tue Mar 31 2020 17:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.98805 * 2 1 4 4 O 1.43745 * 109.87652 * 238.91977 * 2 1 3 5 5 C 1.44374 * 106.97626 * 267.08525 * 4 2 1 6 6 C 1.54993 * 103.49128 * 319.94204 * 5 4 2 7 7 C 1.54098 * 109.88133 * 121.08767 * 2 1 3 8 8 C 1.52998 * 110.48860 * 236.20163 * 7 2 1 9 9 N 1.46500 * 110.48855 * 358.72123 * 7 2 1 10 10 C 1.34771 * 120.00322 * 180.02562 * 9 7 2 11 11 O 1.21731 * 119.99838 * 359.97438 * 10 9 7 12 12 C 1.46249 * 120.00473 * 179.97438 * 10 9 7 13 13 C 1.35018 * 120.00301 * 173.67196 * 12 10 9 14 14 C 1.46968 * 120.00039 * 348.61834 * 13 12 10 15 15 C 1.40021 * 120.09756 * 314.87766 * 14 13 12 16 16 C 1.37596 * 119.89266 * 179.97438 * 15 14 13 17 17 C 1.39178 * 120.10628 * 359.97438 * 16 15 14 18 18 O 1.35565 * 119.89936 * 179.97438 * 17 16 15 19 19 C 1.34779 * 117.00308 * 1.45682 * 18 17 16 20 20 H 1.08002 * 119.99944 * 355.07701 * 19 18 17 21 21 C 1.38715 * 119.99876 * 174.80553 * 19 18 17 22 22 N 1.31504 * 120.00434 * 0.27504 * 21 19 18 23 23 Si 1.86800 * 119.99886 * 180.27245 * 21 19 18 24 24 H 1.48502 * 109.47035 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47238 * 120.00148 * 23 21 19 26 26 H 1.48498 * 109.47542 * 240.00136 * 23 21 19 27 27 C 1.39182 * 120.19616 * 0.25336 * 17 16 15 28 28 C 1.37597 * 120.10335 * 359.49050 * 27 17 16 29 29 H 1.08993 * 109.46970 * 298.91077 * 1 2 3 30 30 H 1.08994 * 109.47465 * 58.91479 * 1 2 3 31 31 H 1.09004 * 109.47063 * 178.91434 * 1 2 3 32 32 H 1.09000 * 110.61851 * 78.44510 * 5 4 2 33 33 H 1.09003 * 110.62258 * 201.28136 * 5 4 2 34 34 H 1.09001 * 110.90707 * 278.82398 * 6 5 4 35 35 H 1.09006 * 110.90859 * 155.22407 * 6 5 4 36 36 H 1.09000 * 109.47545 * 181.84257 * 8 7 2 37 37 H 1.09003 * 109.47201 * 301.84627 * 8 7 2 38 38 H 1.09005 * 109.46972 * 61.84228 * 8 7 2 39 39 H 0.97006 * 119.99798 * 359.97438 * 9 7 2 40 40 H 1.08000 * 119.99790 * 353.67129 * 12 10 9 41 41 H 1.08003 * 120.00378 * 168.62431 * 13 12 10 42 42 H 1.07999 * 120.05599 * 359.94818 * 15 14 13 43 43 H 1.08004 * 119.94852 * 180.02562 * 16 15 14 44 44 H 0.97002 * 120.00235 * 179.97438 * 22 21 19 45 45 H 1.08007 * 119.94386 * 179.74468 * 27 17 16 46 46 H 1.07997 * 120.04660 * 180.27805 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0187 -0.6979 -1.1578 5 6 2.2281 -2.0713 -0.7649 6 6 2.8325 -1.9524 0.6573 7 6 2.0541 -0.7483 1.2410 8 6 2.9859 0.1516 2.0551 9 7 0.9382 -1.2119 2.0693 10 6 1.1808 -1.8918 3.2075 11 8 2.3271 -2.1209 3.5470 12 6 0.0669 -2.3542 4.0347 13 6 0.3026 -3.1432 5.1046 14 6 1.6309 -3.7419 5.2978 15 6 2.2954 -4.3393 4.2198 16 6 3.5390 -4.8980 4.4053 17 6 4.1368 -4.8696 5.6618 18 8 5.3620 -5.4218 5.8400 19 6 5.9572 -5.9538 4.7540 20 1 5.4259 -5.9992 3.8148 21 6 7.2542 -6.4380 4.8413 22 7 7.9011 -6.3828 5.9849 23 14 8.0819 -7.1683 3.3344 24 1 7.1479 -7.1131 2.1811 25 1 9.3066 -6.3909 3.0166 26 1 8.4493 -8.5810 3.6072 27 6 3.4779 -4.2811 6.7373 28 6 2.2363 -3.7152 6.5601 29 1 -0.3633 0.4968 0.8995 30 1 -0.3634 0.5306 -0.8800 31 1 -0.3633 -1.0275 -0.0195 32 1 1.2814 -2.6107 -0.7358 33 1 2.9274 -2.5619 -1.4420 34 1 3.9003 -1.7390 0.6096 35 1 2.6433 -2.8559 1.2372 36 1 3.3722 -0.4037 2.9098 37 1 3.8160 0.4771 1.4280 38 1 2.4334 1.0227 2.4074 39 1 0.0247 -1.0290 1.7990 40 1 -0.9442 -2.0644 3.7897 41 1 -0.4849 -3.3346 5.8185 42 1 1.8324 -4.3618 3.2443 43 1 4.0526 -5.3587 3.5742 44 1 8.8080 -6.7217 6.0460 45 1 3.9438 -4.2650 7.7116 46 1 1.7278 -3.2548 7.3942 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492496290.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:39 Heat of formation + Delta-G solvation = -66.522925 kcal Electronic energy + Delta-G solvation = -28942.689043 eV Core-core repulsion = 24991.513958 eV Total energy + Delta-G solvation = -3951.175084 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.86303 -40.78324 -39.84567 -38.14748 -35.97546 -34.59043 -33.96642 -32.59250 -32.12225 -31.76156 -29.68856 -29.53213 -27.35625 -25.55496 -24.85155 -23.52784 -23.01645 -22.56233 -20.68229 -20.28255 -19.86532 -19.03850 -18.16980 -17.62672 -17.41421 -16.47207 -16.30059 -16.08157 -15.79101 -15.54780 -15.45933 -15.25644 -15.01632 -14.95349 -14.44039 -14.29830 -14.19201 -13.98213 -13.90131 -13.71464 -13.56852 -13.30712 -13.02111 -12.88981 -12.67376 -12.55735 -12.38907 -12.23852 -12.21211 -12.12188 -12.09762 -11.64513 -11.21839 -10.93917 -10.69299 -10.50026 -10.36053 -10.02945 -9.54123 -8.54436 -8.50301 -6.16469 0.03609 0.73283 1.13208 1.30711 1.41849 1.49406 2.14862 2.29144 2.51008 2.84162 2.85975 3.22881 3.40517 3.53062 3.72016 3.77096 4.01143 4.05662 4.07332 4.13077 4.15194 4.21137 4.30574 4.51511 4.56067 4.58721 4.64983 4.66089 4.69174 4.74735 4.85554 4.90890 4.98883 5.03470 5.06776 5.11107 5.22001 5.24963 5.28787 5.37233 5.44586 5.57105 5.68727 5.74049 5.86287 5.88361 6.02151 6.26946 6.73927 6.94461 7.50485 7.76658 8.73199 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011693 B = 0.003684 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.108213 B = 7597.804360 C = 9386.802838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.073 3.927 3 H 0.111 0.889 4 O -0.383 6.383 5 C 0.051 3.949 6 C -0.159 4.159 7 C 0.153 3.847 8 C -0.155 4.155 9 N -0.710 5.710 10 C 0.525 3.475 11 O -0.552 6.552 12 C -0.232 4.232 13 C 0.005 3.995 14 C -0.156 4.156 15 C 0.013 3.987 16 C -0.254 4.254 17 C 0.126 3.874 18 O -0.230 6.230 19 C -0.413 4.413 20 H 0.096 0.904 21 C -0.021 4.021 22 N -0.919 5.919 23 Si 1.017 2.983 24 H -0.255 1.255 25 H -0.267 1.267 26 H -0.263 1.263 27 C -0.222 4.222 28 C -0.046 4.046 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.415 0.585 40 H 0.172 0.828 41 H 0.168 0.832 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.274 0.726 45 H 0.111 0.889 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.449 12.941 -11.994 27.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.015 3.985 3 H 0.129 0.871 4 O -0.302 6.302 5 C -0.026 4.026 6 C -0.197 4.197 7 C 0.066 3.934 8 C -0.213 4.213 9 N -0.368 5.368 10 C 0.316 3.684 11 O -0.431 6.431 12 C -0.252 4.252 13 C -0.015 4.015 14 C -0.157 4.157 15 C -0.005 4.005 16 C -0.273 4.273 17 C 0.075 3.925 18 O -0.136 6.136 19 C -0.489 4.489 20 H 0.114 0.886 21 C -0.219 4.219 22 N -0.557 5.557 23 Si 0.836 3.164 24 H -0.178 1.178 25 H -0.192 1.192 26 H -0.188 1.188 27 C -0.241 4.241 28 C -0.064 4.064 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.257 0.743 40 H 0.189 0.811 41 H 0.185 0.815 42 H 0.130 0.870 43 H 0.124 0.876 44 H 0.083 0.917 45 H 0.129 0.871 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -20.287 12.812 -11.705 26.697 hybrid contribution 0.867 -0.537 -0.259 1.052 sum -19.421 12.275 -11.965 25.904 Atomic orbital electron populations 1.22277 0.93506 1.03426 1.04263 1.23114 0.95838 0.96836 0.82724 0.87080 1.88913 1.86385 1.21476 1.33475 1.23596 1.00528 0.83911 0.94521 1.23423 1.00374 0.99026 0.96914 1.21437 0.87418 0.93460 0.91102 1.22119 0.99303 0.99101 1.00793 1.46266 1.09926 1.57634 1.22934 1.19081 0.90101 0.78069 0.81144 1.90995 1.24370 1.56287 1.71454 1.23083 0.99051 1.04616 0.98442 1.22561 0.93820 0.89953 0.95135 1.18850 0.97594 1.06089 0.93143 1.20696 0.91830 0.91271 0.96744 1.20967 0.99054 1.10678 0.96647 1.20050 0.85813 0.91735 0.94874 1.83869 1.27083 1.65993 1.36677 1.21829 0.98243 1.39223 0.89619 0.88620 1.26585 0.95639 0.97517 1.02158 1.70163 1.12770 1.45699 1.27057 0.84559 0.78087 0.78061 0.75661 1.17822 1.19223 1.18769 1.20284 0.98425 1.08235 0.97183 1.21086 0.92743 0.95540 0.97055 0.89127 0.90327 0.91365 0.90982 0.88194 0.91273 0.91377 0.92899 0.91467 0.91054 0.74336 0.81110 0.81453 0.87005 0.87554 0.91733 0.87079 0.82896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 8.10 71.98 0.58 -1.13 16 2 C 0.07 1.16 3.76 30.97 0.12 1.28 16 3 H 0.11 1.59 7.69 -2.39 -0.02 1.57 16 4 O -0.38 -7.87 11.19 -148.98 -1.67 -9.54 16 5 C 0.05 1.00 7.66 72.66 0.56 1.55 16 6 C -0.16 -3.92 5.95 31.89 0.19 -3.73 16 7 C 0.15 3.13 0.93 4.59 0.00 3.13 16 8 C -0.16 -3.66 8.16 71.98 0.59 -3.07 16 9 N -0.71 -12.60 4.84 -422.77 -2.05 -14.64 16 10 C 0.53 12.85 6.05 86.33 0.52 13.37 16 11 O -0.55 -19.41 9.25 -4.45 -0.04 -19.45 16 12 C -0.23 -4.17 9.91 23.61 0.23 -3.93 16 13 C 0.00 0.10 9.79 23.82 0.23 0.33 16 14 C -0.16 -5.18 4.47 -20.13 -0.09 -5.27 16 15 C 0.01 0.50 6.64 22.55 0.15 0.65 16 16 C -0.25 -12.33 9.14 22.34 0.20 -12.12 16 17 C 0.13 6.79 6.67 22.72 0.15 6.94 16 18 O -0.23 -14.69 9.74 -20.19 -0.20 -14.88 16 19 C -0.41 -25.47 9.48 67.93 0.64 -24.83 16 20 H 0.10 5.55 5.17 -2.91 -0.02 5.53 16 21 C -0.02 -1.27 5.49 84.86 0.47 -0.81 16 22 N -0.92 -58.27 13.67 21.62 0.30 -57.97 16 23 Si 1.02 44.85 29.55 68.60 2.03 46.87 16 24 H -0.25 -10.52 7.11 99.48 0.71 -9.81 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 27 C -0.22 -10.19 9.97 22.34 0.22 -9.96 16 28 C -0.05 -1.65 9.78 22.55 0.22 -1.43 16 29 H 0.09 0.54 7.28 -2.39 -0.02 0.53 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.63 7.39 -2.39 -0.02 0.61 16 32 H 0.07 1.22 8.11 -2.39 -0.02 1.20 16 33 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 1.91 7.87 -2.39 -0.02 1.89 16 35 H 0.07 2.00 6.96 -2.38 -0.02 1.98 16 36 H 0.05 1.69 6.05 -2.39 -0.01 1.68 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.39 8.14 -2.38 -0.02 1.38 16 39 H 0.41 4.46 5.27 -92.70 -0.49 3.97 16 40 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 41 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 42 H 0.11 3.91 7.18 -2.91 -0.02 3.89 16 43 H 0.11 5.36 5.60 -2.91 -0.02 5.35 16 44 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 45 H 0.11 5.02 8.06 -2.91 -0.02 4.99 16 46 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -81.95 369.22 3.88 -78.07 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: 0.52 Total: 30.57 kcal Atomic # 6 Polarization: -44.03 SS G_CDS: 5.00 Total: -39.03 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -1.75 Total: -72.62 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -1.90 Total: -43.87 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -81.95 3.88 -78.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492496290.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.550 kcal (2) G-P(sol) polarization free energy of solvation -81.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds