Wall clock time and date at job start Tue Mar 31 2020 17:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.49313 * 2 1 4 4 C 1.53188 * 109.52566 * 239.91949 * 2 1 3 5 5 N 1.46929 * 108.77563 * 185.39381 * 4 2 1 6 6 C 1.34775 * 120.63025 * 233.60485 * 5 4 2 7 7 O 1.21722 * 120.00085 * 354.51369 * 6 5 4 8 8 C 1.46259 * 120.00078 * 174.51318 * 6 5 4 9 9 C 1.35012 * 120.00342 * 172.77976 * 8 6 5 10 10 C 1.46972 * 119.99855 * 348.98185 * 9 8 6 11 11 C 1.40022 * 120.10122 * 311.80701 * 10 9 8 12 12 C 1.37596 * 119.89646 * 179.71285 * 11 10 9 13 13 C 1.39175 * 120.10109 * 0.54222 * 12 11 10 14 14 O 1.35566 * 119.89919 * 179.73835 * 13 12 11 15 15 C 1.34783 * 117.00284 * 186.67427 * 14 13 12 16 16 H 1.08002 * 119.99740 * 5.85023 * 15 14 13 17 17 C 1.38712 * 120.00370 * 185.85688 * 15 14 13 18 18 N 1.31509 * 120.00628 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99811 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47012 * 90.00309 * 19 17 15 21 21 H 1.48501 * 109.47318 * 209.99994 * 19 17 15 22 22 H 1.48503 * 109.47349 * 330.00426 * 19 17 15 23 23 C 1.39179 * 120.20267 * 359.75832 * 13 12 11 24 24 C 1.37602 * 120.10293 * 359.95370 * 23 13 12 25 25 C 1.46925 * 118.73934 * 53.60728 * 5 4 2 26 26 C 1.53194 * 108.77501 * 306.39443 * 25 5 4 27 27 C 1.53035 * 109.31628 * 54.63041 * 26 25 5 28 28 H 1.09002 * 109.45661 * 58.64326 * 27 26 25 29 29 O 1.42902 * 109.46231 * 178.61459 * 27 26 25 30 30 H 1.09004 * 109.47346 * 299.93361 * 1 2 3 31 31 H 1.08998 * 109.47644 * 59.94127 * 1 2 3 32 32 H 1.09003 * 109.46578 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.58796 * 305.17695 * 4 2 1 34 34 H 1.08998 * 109.58830 * 65.60596 * 4 2 1 35 35 H 1.08003 * 119.99399 * 352.78022 * 8 6 5 36 36 H 1.08000 * 120.00498 * 168.98507 * 9 8 6 37 37 H 1.08000 * 120.05066 * 359.97438 * 11 10 9 38 38 H 1.07996 * 119.94895 * 180.27385 * 12 11 10 39 39 H 0.96991 * 120.00483 * 179.97438 * 18 17 15 40 40 H 1.07996 * 119.94948 * 179.97438 * 23 13 12 41 41 H 1.07996 * 120.05039 * 180.02562 * 24 23 13 42 42 H 1.08997 * 109.59104 * 186.60309 * 25 5 4 43 43 H 1.08998 * 109.59063 * 66.17626 * 25 5 4 44 44 H 1.09006 * 109.49312 * 294.68025 * 26 25 5 45 45 H 1.08996 * 109.50054 * 174.58741 * 26 25 5 46 46 H 0.96693 * 114.00138 * 300.00838 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0420 -0.7236 -1.2493 5 7 3.5053 -0.8282 -1.1689 6 6 4.2819 -0.3848 -2.1773 7 8 3.7719 0.0156 -3.2075 8 6 5.7374 -0.3848 -2.0339 9 6 6.5200 -0.0801 -3.0910 10 6 5.9346 0.0136 -4.4358 11 6 5.0919 -1.0005 -4.9071 12 6 4.5414 -0.9056 -6.1646 13 6 4.8300 0.1906 -6.9720 14 8 4.2896 0.2774 -8.2123 15 6 4.7144 1.2886 -8.9956 16 1 5.5198 1.9271 -8.6636 17 6 4.1172 1.5095 -10.2279 18 7 4.5313 2.4965 -10.9919 19 14 2.7245 0.4049 -10.8022 20 1 1.4270 0.9690 -10.3509 21 1 2.7387 0.3207 -12.2847 22 1 2.9005 -0.9530 -10.2275 23 6 5.6721 1.1980 -6.5102 24 6 6.2224 1.1145 -5.2518 25 6 4.1060 -1.4253 0.0316 26 6 3.5708 -0.6938 1.2666 27 6 2.0408 -0.7226 1.2486 28 1 1.6973 -1.7569 1.2353 29 8 1.5385 -0.0690 2.4159 30 1 -0.3634 0.5128 0.8906 31 1 -0.3634 0.5147 -0.8894 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6065 -1.7217 -1.2978 34 1 1.7644 -0.1581 -2.1388 35 1 6.1861 -0.6285 -1.0822 36 1 7.5762 0.0947 -2.9485 37 1 4.8710 -1.8538 -4.2830 38 1 3.8878 -1.6851 -6.5273 39 1 4.1139 2.6507 -11.8538 40 1 5.8936 2.0466 -7.1403 41 1 6.8754 1.8968 -4.8941 42 1 5.1903 -1.3227 -0.0126 43 1 3.8388 -2.4805 0.0878 44 1 3.9154 0.3403 1.2546 45 1 3.9334 -1.1881 2.1679 46 1 1.8219 -0.4749 3.2466 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492665529.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:03 Heat of formation + Delta-G solvation = -58.080041 kcal Electronic energy + Delta-G solvation = -28061.329748 eV Core-core repulsion = 24110.520775 eV Total energy + Delta-G solvation = -3950.808973 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.45174 -39.15935 -38.41412 -36.71052 -35.75961 -33.75502 -32.97118 -32.25564 -31.42661 -30.20615 -28.54067 -26.98557 -25.53826 -25.02625 -22.80308 -22.74972 -21.91110 -20.89310 -20.10439 -18.48774 -17.88910 -17.79165 -17.33026 -17.04433 -15.94397 -15.45203 -15.16779 -14.86100 -14.69606 -14.40343 -14.01719 -13.89747 -13.81953 -13.67234 -13.41514 -13.27232 -13.24036 -12.72263 -12.58082 -12.26005 -12.24097 -12.14593 -12.07637 -11.97548 -11.63571 -11.38016 -11.25927 -10.93540 -10.79113 -10.66101 -10.56809 -10.26262 -10.12600 -9.53294 -9.45557 -9.22413 -8.77146 -8.71916 -8.04743 -7.00541 -6.41062 -4.04987 1.19205 2.32268 2.55804 2.94830 3.23913 3.28309 3.42752 3.47688 3.82534 4.24629 4.25613 4.33957 4.59622 4.61131 4.68116 4.78903 4.89568 4.91805 5.01633 5.10072 5.12765 5.18412 5.27360 5.34447 5.36893 5.49301 5.52908 5.65187 5.67544 5.70767 5.75901 5.82587 5.97441 6.04403 6.17786 6.21774 6.32509 6.45330 6.51979 6.66773 6.92155 7.17894 7.25107 7.30211 7.38279 7.44725 7.67431 7.84640 8.07226 8.41486 8.94390 9.59067 10.66442 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017770 B = 0.002622 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.340876 B =10676.739505 C =11697.317845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.080 0.920 4 C 0.119 3.881 5 N -0.621 5.621 6 C 0.543 3.457 7 O -0.508 6.508 8 C -0.262 4.262 9 C 0.025 3.975 10 C -0.173 4.173 11 C -0.003 4.003 12 C -0.197 4.197 13 C 0.174 3.826 14 O -0.214 6.214 15 C -0.387 4.387 16 H 0.107 0.893 17 C 0.063 3.937 18 N -0.878 5.878 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.232 4.232 24 C -0.046 4.046 25 C 0.111 3.889 26 C -0.169 4.169 27 C 0.111 3.889 28 H 0.056 0.944 29 O -0.564 6.564 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.280 0.720 40 H 0.132 0.868 41 H 0.109 0.891 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.857 -9.138 26.861 28.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.098 0.902 4 C -0.003 4.003 5 N -0.356 5.356 6 C 0.335 3.665 7 O -0.384 6.384 8 C -0.283 4.283 9 C 0.006 3.994 10 C -0.174 4.174 11 C -0.021 4.021 12 C -0.217 4.217 13 C 0.121 3.879 14 O -0.118 6.118 15 C -0.462 4.462 16 H 0.124 0.876 17 C -0.140 4.140 18 N -0.515 5.515 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.251 4.251 24 C -0.064 4.064 25 C -0.013 4.013 26 C -0.208 4.208 27 C 0.052 3.948 28 H 0.074 0.926 29 O -0.370 6.370 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.120 0.880 38 H 0.132 0.868 39 H 0.090 0.910 40 H 0.150 0.850 41 H 0.127 0.873 42 H 0.111 0.889 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.609 -8.545 25.463 26.907 hybrid contribution -0.191 -0.582 0.377 0.720 sum -1.800 -9.128 25.840 27.464 Atomic orbital electron populations 1.21686 0.93757 1.01967 1.02496 1.21504 0.96854 1.00658 0.92752 0.90167 1.21586 0.79663 1.00629 0.98452 1.48086 1.06364 1.62394 1.18732 1.18494 0.87908 0.77482 0.82612 1.90993 1.75113 1.45810 1.26491 1.22751 0.92645 1.13074 0.99826 1.22389 0.98160 0.87190 0.91703 1.18350 1.06207 0.98779 0.94067 1.20421 0.92090 0.96395 0.93241 1.19994 1.07251 0.98992 0.95429 1.19274 0.91212 0.92882 0.84536 1.83525 1.59165 1.48400 1.20696 1.20811 1.18764 1.08433 0.98237 0.87552 1.24490 0.98172 0.96360 0.95004 1.69622 1.41830 1.28517 1.11547 0.86182 0.81480 0.81799 0.77479 1.19855 1.20753 1.18288 1.21084 1.04739 1.01673 0.97648 1.20770 0.97112 0.95820 0.92748 1.21673 0.99188 0.96640 0.83768 1.22697 0.96937 1.02625 0.98531 1.21808 0.91760 0.95389 0.85849 0.92644 1.86543 1.75679 1.58892 1.15845 0.91561 0.92247 0.92759 0.91684 0.88135 0.85799 0.85826 0.87965 0.86820 0.91016 0.85023 0.87342 0.88928 0.91500 0.90504 0.90577 0.77782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.04 37.16 0.34 -0.90 16 2 C -0.10 -0.93 2.62 -90.50 -0.24 -1.17 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C 0.12 1.29 5.70 -3.71 -0.02 1.27 16 5 N -0.62 -6.89 2.97 -174.47 -0.52 -7.40 16 6 C 0.54 7.83 6.81 -13.04 -0.09 7.74 16 7 O -0.51 -9.64 11.93 5.17 0.06 -9.58 16 8 C -0.26 -3.15 9.22 -37.51 -0.35 -3.50 16 9 C 0.03 0.34 9.77 -37.19 -0.36 -0.03 16 10 C -0.17 -3.09 4.34 -105.02 -0.46 -3.54 16 11 C 0.00 -0.06 6.78 -39.15 -0.27 -0.32 16 12 C -0.20 -4.27 9.97 -39.47 -0.39 -4.66 16 13 C 0.17 4.25 6.65 -38.88 -0.26 3.99 16 14 O -0.21 -5.86 8.57 0.75 0.01 -5.85 16 15 C -0.39 -11.17 9.88 30.91 0.31 -10.87 16 16 H 0.11 3.13 5.54 -52.49 -0.29 2.84 16 17 C 0.06 1.81 5.49 -17.51 -0.10 1.71 16 18 N -0.88 -25.69 13.96 55.48 0.77 -24.91 16 19 Si 0.91 22.16 28.62 -169.99 -4.86 17.29 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 23 C -0.23 -5.29 9.10 -39.46 -0.36 -5.65 16 24 C -0.05 -0.89 9.78 -39.14 -0.38 -1.27 16 25 C 0.11 0.80 6.35 -3.71 -0.02 0.78 16 26 C -0.17 -1.07 5.70 -26.61 -0.15 -1.22 16 27 C 0.11 0.82 2.88 -26.69 -0.08 0.74 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 O -0.56 -4.29 12.59 -35.23 -0.44 -4.73 16 30 H 0.07 0.61 7.65 -51.93 -0.40 0.21 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 1.34 7.04 -51.93 -0.37 0.98 16 35 H 0.12 1.04 5.92 -52.48 -0.31 0.73 16 36 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.10 1.74 7.46 -52.49 -0.39 1.35 16 38 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 39 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.13 3.12 5.72 -52.49 -0.30 2.82 16 41 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.09 0.57 5.32 -51.93 -0.28 0.29 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.38 1.24 9.08 45.56 0.41 1.66 16 LS Contribution 371.41 15.07 5.60 5.60 Total: -1.00 -33.93 371.41 -7.97 -41.90 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.70 Total: 4.59 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -2.88 Total: -16.90 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.26 Total: -32.32 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.38 Total: -20.16 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.86 Total: 17.29 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.93 -7.97 -41.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492665529.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.181 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds