Wall clock time and date at job start Tue Mar 31 2020 17:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.49313 * 2 1 4 4 C 1.53188 * 109.52566 * 239.91949 * 2 1 3 5 5 N 1.46929 * 108.77563 * 185.39381 * 4 2 1 6 6 C 1.34775 * 120.63025 * 233.60485 * 5 4 2 7 7 O 1.21722 * 120.00085 * 354.51369 * 6 5 4 8 8 C 1.46259 * 120.00078 * 174.51318 * 6 5 4 9 9 C 1.35012 * 120.00342 * 172.77976 * 8 6 5 10 10 C 1.46972 * 119.99855 * 348.98185 * 9 8 6 11 11 C 1.40022 * 120.10122 * 311.80701 * 10 9 8 12 12 C 1.37596 * 119.89646 * 179.71285 * 11 10 9 13 13 C 1.39175 * 120.10109 * 0.54222 * 12 11 10 14 14 O 1.35566 * 119.89919 * 179.73835 * 13 12 11 15 15 C 1.34783 * 117.00284 * 186.67427 * 14 13 12 16 16 H 1.08002 * 119.99740 * 5.85023 * 15 14 13 17 17 C 1.38712 * 120.00370 * 185.85688 * 15 14 13 18 18 N 1.31509 * 120.00628 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99811 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47012 * 90.00309 * 19 17 15 21 21 H 1.48501 * 109.47318 * 209.99994 * 19 17 15 22 22 H 1.48503 * 109.47349 * 330.00426 * 19 17 15 23 23 C 1.39179 * 120.20267 * 359.75832 * 13 12 11 24 24 C 1.37602 * 120.10293 * 359.95370 * 23 13 12 25 25 C 1.46925 * 118.73934 * 53.60728 * 5 4 2 26 26 C 1.53194 * 108.77501 * 306.39443 * 25 5 4 27 27 C 1.53035 * 109.31628 * 54.63041 * 26 25 5 28 28 H 1.09002 * 109.45661 * 58.64326 * 27 26 25 29 29 O 1.42902 * 109.46231 * 178.61459 * 27 26 25 30 30 H 1.09004 * 109.47346 * 299.93361 * 1 2 3 31 31 H 1.08998 * 109.47644 * 59.94127 * 1 2 3 32 32 H 1.09003 * 109.46578 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.58796 * 305.17695 * 4 2 1 34 34 H 1.08998 * 109.58830 * 65.60596 * 4 2 1 35 35 H 1.08003 * 119.99399 * 352.78022 * 8 6 5 36 36 H 1.08000 * 120.00498 * 168.98507 * 9 8 6 37 37 H 1.08000 * 120.05066 * 359.97438 * 11 10 9 38 38 H 1.07996 * 119.94895 * 180.27385 * 12 11 10 39 39 H 0.96991 * 120.00483 * 179.97438 * 18 17 15 40 40 H 1.07996 * 119.94948 * 179.97438 * 23 13 12 41 41 H 1.07996 * 120.05039 * 180.02562 * 24 23 13 42 42 H 1.08997 * 109.59104 * 186.60309 * 25 5 4 43 43 H 1.08998 * 109.59063 * 66.17626 * 25 5 4 44 44 H 1.09006 * 109.49312 * 294.68025 * 26 25 5 45 45 H 1.08996 * 109.50054 * 174.58741 * 26 25 5 46 46 H 0.96693 * 114.00138 * 300.00838 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0420 -0.7236 -1.2493 5 7 3.5053 -0.8282 -1.1689 6 6 4.2819 -0.3848 -2.1773 7 8 3.7719 0.0156 -3.2075 8 6 5.7374 -0.3848 -2.0339 9 6 6.5200 -0.0801 -3.0910 10 6 5.9346 0.0136 -4.4358 11 6 5.0919 -1.0005 -4.9071 12 6 4.5414 -0.9056 -6.1646 13 6 4.8300 0.1906 -6.9720 14 8 4.2896 0.2774 -8.2123 15 6 4.7144 1.2886 -8.9956 16 1 5.5198 1.9271 -8.6636 17 6 4.1172 1.5095 -10.2279 18 7 4.5313 2.4965 -10.9919 19 14 2.7245 0.4049 -10.8022 20 1 1.4270 0.9690 -10.3509 21 1 2.7387 0.3207 -12.2847 22 1 2.9005 -0.9530 -10.2275 23 6 5.6721 1.1980 -6.5102 24 6 6.2224 1.1145 -5.2518 25 6 4.1060 -1.4253 0.0316 26 6 3.5708 -0.6938 1.2666 27 6 2.0408 -0.7226 1.2486 28 1 1.6973 -1.7569 1.2353 29 8 1.5385 -0.0690 2.4159 30 1 -0.3634 0.5128 0.8906 31 1 -0.3634 0.5147 -0.8894 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6065 -1.7217 -1.2978 34 1 1.7644 -0.1581 -2.1388 35 1 6.1861 -0.6285 -1.0822 36 1 7.5762 0.0947 -2.9485 37 1 4.8710 -1.8538 -4.2830 38 1 3.8878 -1.6851 -6.5273 39 1 4.1139 2.6507 -11.8538 40 1 5.8936 2.0466 -7.1403 41 1 6.8754 1.8968 -4.8941 42 1 5.1903 -1.3227 -0.0126 43 1 3.8388 -2.4805 0.0878 44 1 3.9154 0.3403 1.2546 45 1 3.9334 -1.1881 2.1679 46 1 1.8219 -0.4749 3.2466 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492665529.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:02 Heat of formation + Delta-G solvation = -81.833643 kcal Electronic energy + Delta-G solvation = -28062.359782 eV Core-core repulsion = 24110.520775 eV Total energy + Delta-G solvation = -3951.839007 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.43823 -40.76618 -39.46464 -38.21205 -36.63701 -34.78038 -34.45707 -33.87978 -32.12110 -31.85823 -29.99108 -27.97745 -27.20849 -26.04981 -24.00665 -23.58734 -23.43558 -22.19599 -20.98424 -19.92097 -19.42841 -18.98207 -18.61181 -18.06476 -17.03311 -16.62587 -16.25910 -16.12308 -15.96676 -15.74491 -15.50332 -15.30372 -15.08626 -14.69738 -14.51636 -14.36267 -14.25380 -14.15384 -13.99817 -13.92987 -13.64557 -13.12100 -13.02612 -12.76832 -12.69672 -12.56328 -12.50154 -12.40821 -12.18532 -11.98869 -11.95959 -11.38113 -11.26617 -11.01159 -10.83055 -10.57045 -10.45362 -9.80961 -9.50105 -8.65905 -8.52972 -6.23732 -0.00898 0.66144 1.02634 1.27507 1.33511 1.48978 2.08187 2.25843 2.41591 2.77791 3.09009 3.15882 3.27212 3.58979 3.70876 3.90338 3.93302 3.98798 4.09248 4.11762 4.13968 4.28119 4.37962 4.50856 4.52418 4.53538 4.65065 4.70958 4.74530 4.77157 4.82737 4.91463 4.92907 5.05832 5.12395 5.18071 5.20770 5.27282 5.34755 5.37175 5.43510 5.59524 5.66647 5.76062 5.79986 5.89256 6.25237 6.50658 6.81380 6.94797 7.34681 7.57501 8.58833 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017770 B = 0.002622 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.340876 B =10676.739505 C =11697.317845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.096 4.096 3 H 0.053 0.947 4 C 0.120 3.880 5 N -0.614 5.614 6 C 0.527 3.473 7 O -0.568 6.568 8 C -0.227 4.227 9 C 0.002 3.998 10 C -0.142 4.142 11 C -0.002 4.002 12 C -0.203 4.203 13 C 0.129 3.871 14 O -0.245 6.245 15 C -0.400 4.400 16 H 0.081 0.919 17 C 0.011 3.989 18 N -0.921 5.921 19 Si 0.969 3.031 20 H -0.269 1.269 21 H -0.261 1.261 22 H -0.264 1.264 23 C -0.247 4.247 24 C -0.057 4.057 25 C 0.103 3.897 26 C -0.162 4.162 27 C 0.113 3.887 28 H 0.072 0.928 29 O -0.582 6.582 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.176 0.824 36 H 0.170 0.830 37 H 0.127 0.873 38 H 0.118 0.882 39 H 0.286 0.714 40 H 0.108 0.892 41 H 0.141 0.859 42 H 0.113 0.887 43 H 0.089 0.911 44 H 0.060 0.940 45 H 0.111 0.889 46 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.004 -11.806 31.840 33.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 H 0.072 0.928 4 C -0.004 4.004 5 N -0.347 5.347 6 C 0.319 3.681 7 O -0.448 6.448 8 C -0.247 4.247 9 C -0.017 4.017 10 C -0.142 4.142 11 C -0.020 4.020 12 C -0.222 4.222 13 C 0.080 3.920 14 O -0.152 6.152 15 C -0.476 4.476 16 H 0.098 0.902 17 C -0.188 4.188 18 N -0.561 5.561 19 Si 0.792 3.208 20 H -0.194 1.194 21 H -0.186 1.186 22 H -0.189 1.189 23 C -0.267 4.267 24 C -0.075 4.075 25 C -0.019 4.019 26 C -0.200 4.200 27 C 0.055 3.945 28 H 0.090 0.910 29 O -0.391 6.391 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.193 0.807 36 H 0.187 0.813 37 H 0.145 0.855 38 H 0.136 0.864 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.159 0.841 42 H 0.131 0.869 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.129 0.871 46 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -0.728 -11.249 30.556 32.569 hybrid contribution -0.413 0.165 -0.572 0.725 sum -1.141 -11.083 29.984 31.987 Atomic orbital electron populations 1.21653 0.93519 1.02638 1.01797 1.21417 0.97088 0.99326 0.93701 0.92810 1.21540 0.80037 1.01072 0.97710 1.48206 1.06311 1.60898 1.19241 1.19120 0.89333 0.77083 0.82526 1.90991 1.76266 1.48568 1.28986 1.23174 0.90926 1.09054 1.01573 1.22614 1.00525 0.89374 0.89172 1.18919 1.02934 0.96520 0.95862 1.20733 0.91589 0.97540 0.92140 1.20249 1.07522 0.98232 0.96232 1.19748 0.92937 0.94731 0.84579 1.83463 1.61032 1.48580 1.22130 1.20732 1.18779 1.08808 0.99265 0.90167 1.25281 1.00642 0.97876 0.94959 1.69698 1.43701 1.30393 1.12347 0.85243 0.78320 0.79398 0.77882 1.19405 1.18583 1.18859 1.21118 1.05449 1.00885 0.99202 1.21127 0.97417 0.97399 0.91553 1.22060 1.00166 0.97617 0.82040 1.22651 0.95810 1.01992 0.99552 1.21745 0.92605 0.95474 0.84710 0.91014 1.86501 1.76084 1.59615 1.16887 0.91890 0.93319 0.91363 0.89994 0.91718 0.80698 0.81306 0.85492 0.86398 0.90470 0.87408 0.84139 0.86920 0.89252 0.92131 0.87092 0.75475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.04 71.98 0.65 -1.66 16 2 C -0.10 -1.68 2.62 -10.72 -0.03 -1.71 16 3 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 4 C 0.12 2.42 5.70 86.36 0.49 2.92 16 5 N -0.61 -11.62 2.97 -824.11 -2.45 -14.07 16 6 C 0.53 13.61 6.81 86.33 0.59 14.20 16 7 O -0.57 -21.13 11.93 -4.42 -0.05 -21.18 16 8 C -0.23 -4.20 9.22 23.61 0.22 -3.98 16 9 C 0.00 0.05 9.77 23.82 0.23 0.28 16 10 C -0.14 -4.76 4.34 -20.12 -0.09 -4.84 16 11 C 0.00 -0.07 6.78 22.55 0.15 0.08 16 12 C -0.20 -9.04 9.97 22.34 0.22 -8.81 16 13 C 0.13 6.72 6.65 22.72 0.15 6.87 16 14 O -0.24 -14.38 8.57 -20.24 -0.17 -14.55 16 15 C -0.40 -24.90 9.88 67.93 0.67 -24.23 16 16 H 0.08 5.22 5.54 -2.91 -0.02 5.20 16 17 C 0.01 0.66 5.49 84.85 0.47 1.13 16 18 N -0.92 -56.84 13.96 21.62 0.30 -56.54 16 19 Si 0.97 47.75 28.62 68.60 1.96 49.71 16 20 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.26 -13.06 7.11 99.48 0.71 -12.36 16 23 C -0.25 -11.96 9.10 22.35 0.20 -11.75 16 24 C -0.06 -2.18 9.78 22.55 0.22 -1.95 16 25 C 0.10 0.91 6.35 86.36 0.55 1.46 16 26 C -0.16 -1.25 5.70 30.67 0.17 -1.08 16 27 C 0.11 1.28 2.88 30.62 0.09 1.36 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 29 O -0.58 -7.02 12.59 -148.98 -1.88 -8.90 16 30 H 0.06 1.10 7.65 -2.39 -0.02 1.08 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.06 1.80 7.04 -2.39 -0.02 1.78 16 35 H 0.18 1.51 5.92 -2.91 -0.02 1.49 16 36 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 37 H 0.13 4.01 7.46 -2.91 -0.02 3.98 16 38 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 39 H 0.29 16.10 8.31 -92.71 -0.77 15.33 16 40 H 0.11 5.63 5.72 -2.91 -0.02 5.62 16 41 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 42 H 0.11 0.56 5.32 -2.39 -0.01 0.54 16 43 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 45 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.40 1.08 9.08 -74.06 -0.67 0.40 16 Total: -1.00 -82.61 371.41 3.01 -79.60 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.33 Total: 17.63 kcal Atomic # 6 Polarization: -36.68 SS G_CDS: 4.97 Total: -31.71 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: -2.15 Total: -70.60 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -2.10 Total: -44.63 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 1.96 Total: 49.71 kcal Total: -82.61 3.01 -79.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492665529.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.237 kcal (2) G-P(sol) polarization free energy of solvation -82.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds