Wall clock time and date at job start Tue Mar 31 2020 17:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.49639 * 2 1 4 4 C 1.53188 * 109.52816 * 239.91438 * 2 1 3 5 5 N 1.46960 * 108.88906 * 185.47534 * 4 2 1 6 6 C 1.34779 * 120.65297 * 233.53734 * 5 4 2 7 7 O 1.21727 * 120.00072 * 354.72027 * 6 5 4 8 8 C 1.46258 * 119.99971 * 174.72264 * 6 5 4 9 9 C 1.35022 * 119.99686 * 185.16334 * 8 6 5 10 10 C 1.46961 * 119.99440 * 180.02562 * 9 8 6 11 11 C 1.40020 * 120.10370 * 359.72728 * 10 9 8 12 12 C 1.37601 * 119.89767 * 179.74332 * 11 10 9 13 13 C 1.39174 * 120.10355 * 0.50709 * 12 11 10 14 14 O 1.35570 * 119.90276 * 179.73907 * 13 12 11 15 15 C 1.34783 * 117.00285 * 185.58814 * 14 13 12 16 16 H 1.08005 * 119.99715 * 354.94564 * 15 14 13 17 17 C 1.38719 * 120.00097 * 174.94872 * 15 14 13 18 18 N 1.31508 * 119.99647 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99846 * 179.97438 * 17 15 14 20 20 H 1.48510 * 109.46754 * 89.99946 * 19 17 15 21 21 H 1.48499 * 109.47269 * 209.99636 * 19 17 15 22 22 H 1.48495 * 109.47514 * 330.00085 * 19 17 15 23 23 C 1.39183 * 120.19998 * 359.76917 * 13 12 11 24 24 C 1.37602 * 120.10210 * 359.97438 * 23 13 12 25 25 C 1.46924 * 118.71591 * 53.35873 * 5 4 2 26 26 C 1.53187 * 108.89130 * 306.63876 * 25 5 4 27 27 C 1.53038 * 109.49641 * 120.05813 * 2 1 3 28 28 H 1.09003 * 109.45030 * 61.33839 * 27 2 1 29 29 O 1.42896 * 109.46652 * 301.37097 * 27 2 1 30 30 H 1.08999 * 109.47088 * 299.93863 * 1 2 3 31 31 H 1.09000 * 109.46743 * 59.93632 * 1 2 3 32 32 H 1.08995 * 109.47224 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.58436 * 305.18964 * 4 2 1 34 34 H 1.09002 * 109.58359 * 65.61406 * 4 2 1 35 35 H 1.07992 * 119.99702 * 5.16950 * 8 6 5 36 36 H 1.07996 * 120.00113 * 0.02562 * 9 8 6 37 37 H 1.07999 * 120.05160 * 359.97438 * 11 10 9 38 38 H 1.08005 * 119.94863 * 180.23600 * 12 11 10 39 39 H 0.97000 * 119.99761 * 180.02562 * 18 17 15 40 40 H 1.08003 * 119.94827 * 179.97438 * 23 13 12 41 41 H 1.07996 * 120.04685 * 180.02562 * 24 23 13 42 42 H 1.08996 * 109.58316 * 186.78132 * 25 5 4 43 43 H 1.08996 * 109.58695 * 66.50092 * 25 5 4 44 44 H 1.08998 * 109.49798 * 174.51497 * 26 25 5 45 45 H 1.08997 * 109.49745 * 294.61010 * 26 25 5 46 46 H 0.96695 * 114.00489 * 179.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7237 -1.2493 5 7 3.5056 -0.8314 -1.1704 6 6 4.2824 -0.3905 -2.1797 7 8 3.7724 0.0140 -3.2083 8 6 5.7382 -0.3980 -2.0390 9 6 6.5125 0.1393 -3.0059 10 6 7.9753 0.1312 -2.8648 11 6 8.5680 -0.4279 -1.7260 12 6 9.9382 -0.4379 -1.6007 13 6 10.7345 0.1159 -2.5987 14 8 12.0839 0.1086 -2.4686 15 6 12.7931 0.7614 -3.4107 16 1 12.2902 1.1896 -4.2652 17 6 14.1690 0.8833 -3.2828 18 7 14.7813 0.3623 -2.2421 19 14 15.1520 1.7874 -4.5888 20 1 15.2409 3.2266 -4.2334 21 1 16.5185 1.2116 -4.6670 22 1 14.4779 1.6431 -5.9041 23 6 10.1497 0.6780 -3.7298 24 6 8.7805 0.6878 -3.8661 25 6 4.1059 -1.4254 0.0318 26 6 3.5708 -0.6938 1.2667 27 6 2.0407 -0.7226 1.2486 28 1 1.6972 -1.7570 1.2354 29 8 1.5385 -0.0690 2.4159 30 1 -0.3633 0.5129 0.8905 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6064 -1.7217 -1.2977 34 1 1.7645 -0.1581 -2.1387 35 1 6.1936 -0.8333 -1.1620 36 1 6.0570 0.5749 -3.8828 37 1 7.9507 -0.8540 -0.9490 38 1 10.3963 -0.8724 -0.7245 39 1 15.7434 0.4478 -2.1524 40 1 10.7715 1.1071 -4.5016 41 1 8.3276 1.1238 -4.7443 42 1 5.1902 -1.3228 -0.0125 43 1 3.8409 -2.4811 0.0891 44 1 3.9333 -1.1882 2.1680 45 1 3.9154 0.3402 1.2547 46 1 1.8224 -0.4745 3.2466 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492665530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:07 Heat of formation + Delta-G solvation = -75.772718 kcal Electronic energy + Delta-G solvation = -27028.373627 eV Core-core repulsion = 23076.797442 eV Total energy + Delta-G solvation = -3951.576185 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.42956 -39.21918 -38.44772 -36.91778 -35.92936 -33.80694 -33.08234 -32.28402 -31.45283 -30.45698 -28.58225 -26.97478 -25.74343 -25.18373 -22.98866 -22.82999 -22.12113 -20.84223 -20.04088 -18.71947 -18.08223 -17.81635 -17.31839 -16.99665 -16.03705 -15.45652 -15.27695 -14.94714 -14.82039 -14.52258 -14.29926 -14.07208 -13.85924 -13.75591 -13.47858 -13.43742 -13.24987 -12.98706 -12.61213 -12.39437 -12.17540 -12.02960 -11.89790 -11.78971 -11.71967 -11.60213 -11.31293 -11.14318 -11.08999 -10.71342 -10.64259 -10.55469 -10.28061 -9.71269 -9.61990 -9.52360 -8.92665 -8.77757 -8.40768 -7.13813 -6.67205 -4.21936 1.04055 2.11117 2.52162 2.88475 3.02721 3.03561 3.08283 3.49621 3.80494 3.81199 4.23933 4.33873 4.48686 4.57502 4.68245 4.77436 4.88076 4.90047 4.99519 5.06459 5.11367 5.17313 5.26547 5.31159 5.37921 5.45276 5.49580 5.54954 5.60176 5.65539 5.71841 5.76005 5.90600 5.98063 5.99283 6.09880 6.27536 6.44063 6.51356 6.58356 6.76724 6.89477 7.10503 7.21089 7.24880 7.25612 7.37168 7.61421 7.78167 8.25735 8.77610 9.44299 10.49372 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.027841 B = 0.001899 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.476629 B =14739.274460 C =15429.741163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.081 0.919 4 C 0.120 3.880 5 N -0.618 5.618 6 C 0.560 3.440 7 O -0.557 6.557 8 C -0.287 4.287 9 C 0.041 3.959 10 C -0.199 4.199 11 C -0.043 4.043 12 C -0.199 4.199 13 C 0.167 3.833 14 O -0.162 6.162 15 C -0.393 4.393 16 H 0.097 0.903 17 C 0.041 3.959 18 N -0.851 5.851 19 Si 0.945 3.055 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.265 1.265 23 C -0.242 4.242 24 C -0.034 4.034 25 C 0.109 3.891 26 C -0.170 4.170 27 C 0.111 3.889 28 H 0.056 0.944 29 O -0.565 6.565 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.274 0.726 40 H 0.131 0.869 41 H 0.114 0.886 42 H 0.097 0.903 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.558 -3.487 6.651 22.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.099 0.901 4 C -0.003 4.003 5 N -0.351 5.351 6 C 0.354 3.646 7 O -0.438 6.438 8 C -0.308 4.308 9 C 0.021 3.979 10 C -0.200 4.200 11 C -0.061 4.061 12 C -0.219 4.219 13 C 0.110 3.890 14 O -0.063 6.063 15 C -0.468 4.468 16 H 0.115 0.885 17 C -0.165 4.165 18 N -0.484 5.484 19 Si 0.769 3.231 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.189 1.189 23 C -0.261 4.261 24 C -0.053 4.053 25 C -0.014 4.014 26 C -0.208 4.208 27 C 0.052 3.948 28 H 0.074 0.926 29 O -0.370 6.370 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.084 0.916 40 H 0.149 0.851 41 H 0.132 0.868 42 H 0.115 0.885 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -21.652 -3.026 5.915 22.648 hybrid contribution 0.872 0.004 -0.038 0.873 sum -20.780 -3.022 5.877 21.806 Atomic orbital electron populations 1.21679 0.93744 1.01960 1.02428 1.21506 0.96804 1.00723 0.92824 0.90089 1.21594 0.79713 1.00615 0.98394 1.47949 1.06329 1.62321 1.18526 1.18419 0.87846 0.76102 0.82218 1.90766 1.75911 1.48715 1.28360 1.22506 0.91532 1.13303 1.03458 1.22306 0.91985 0.88185 0.95436 1.18454 0.91458 1.11669 0.98459 1.20849 0.93510 0.95907 0.95816 1.20143 0.92567 1.09069 1.00089 1.19612 0.84743 0.91911 0.92694 1.83901 1.12151 1.62592 1.47622 1.21481 0.89445 1.33887 1.02036 0.88519 1.25402 0.95920 0.97086 0.98080 1.70012 1.10543 1.40469 1.27385 0.85641 0.78797 0.79156 0.79506 1.19611 1.20042 1.18942 1.21107 0.94924 1.09518 1.00580 1.20993 0.93016 0.94720 0.96524 1.21731 0.99641 0.96638 0.83422 1.22697 0.96711 1.02840 0.98599 1.21800 0.91890 0.95323 0.85798 0.92620 1.86522 1.75623 1.58980 1.15900 0.91469 0.92413 0.92738 0.91629 0.88412 0.85625 0.85949 0.86575 0.86123 0.91578 0.85099 0.86791 0.88514 0.91328 0.90288 0.90331 0.77602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.04 37.16 0.34 -0.72 16 2 C -0.10 -0.86 2.62 -90.50 -0.24 -1.10 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C 0.12 1.17 5.70 -3.69 -0.02 1.15 16 5 N -0.62 -6.85 2.98 -174.45 -0.52 -7.37 16 6 C 0.56 8.07 7.61 -13.04 -0.10 7.97 16 7 O -0.56 -9.84 15.68 5.16 0.08 -9.75 16 8 C -0.29 -3.95 8.74 -37.50 -0.33 -4.27 16 9 C 0.04 0.62 9.45 -37.19 -0.35 0.27 16 10 C -0.20 -3.36 5.87 -105.03 -0.62 -3.98 16 11 C -0.04 -0.71 9.40 -39.15 -0.37 -1.08 16 12 C -0.20 -3.92 9.97 -39.47 -0.39 -4.32 16 13 C 0.17 3.80 6.66 -38.88 -0.26 3.54 16 14 O -0.16 -4.35 9.74 0.74 0.01 -4.35 16 15 C -0.39 -10.37 9.48 30.91 0.29 -10.07 16 16 H 0.10 2.34 5.18 -52.48 -0.27 2.07 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 18 N -0.85 -23.67 13.67 55.48 0.76 -22.91 16 19 Si 0.95 19.41 29.55 -169.99 -5.02 14.38 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 23 C -0.24 -4.96 9.14 -39.46 -0.36 -5.33 16 24 C -0.03 -0.60 9.78 -39.14 -0.38 -0.99 16 25 C 0.11 0.88 6.34 -3.71 -0.02 0.85 16 26 C -0.17 -1.19 5.70 -26.61 -0.15 -1.34 16 27 C 0.11 0.81 2.88 -26.69 -0.08 0.73 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 O -0.56 -4.28 12.59 -35.23 -0.44 -4.72 16 30 H 0.07 0.55 7.65 -51.93 -0.40 0.15 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 1.12 7.04 -51.93 -0.37 0.75 16 35 H 0.13 1.47 3.85 -52.49 -0.20 1.27 16 36 H 0.12 1.86 7.53 -52.49 -0.40 1.46 16 37 H 0.12 1.56 6.16 -52.49 -0.32 1.24 16 38 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.13 2.66 5.62 -52.48 -0.29 2.37 16 41 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 42 H 0.10 0.76 5.30 -51.93 -0.28 0.49 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.38 1.33 9.08 45.56 0.41 1.75 16 LS Contribution 376.41 15.07 5.67 5.67 Total: -1.00 -31.74 376.41 -8.08 -39.82 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.47 Total: 6.93 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -3.14 Total: -17.71 kcal Atomic # 7 Polarization: -30.51 SS G_CDS: 0.24 Total: -30.27 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.36 Total: -18.83 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.74 -8.08 -39.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492665530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.949 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds