Wall clock time and date at job start Tue Mar 31 2020 17:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.49639 * 2 1 4 4 C 1.53188 * 109.52816 * 239.91438 * 2 1 3 5 5 N 1.46960 * 108.88906 * 185.47534 * 4 2 1 6 6 C 1.34779 * 120.65297 * 233.53734 * 5 4 2 7 7 O 1.21727 * 120.00072 * 354.72027 * 6 5 4 8 8 C 1.46258 * 119.99971 * 174.72264 * 6 5 4 9 9 C 1.35022 * 119.99686 * 185.16334 * 8 6 5 10 10 C 1.46961 * 119.99440 * 180.02562 * 9 8 6 11 11 C 1.40020 * 120.10370 * 359.72728 * 10 9 8 12 12 C 1.37601 * 119.89767 * 179.74332 * 11 10 9 13 13 C 1.39174 * 120.10355 * 0.50709 * 12 11 10 14 14 O 1.35570 * 119.90276 * 179.73907 * 13 12 11 15 15 C 1.34783 * 117.00285 * 185.58814 * 14 13 12 16 16 H 1.08005 * 119.99715 * 354.94564 * 15 14 13 17 17 C 1.38719 * 120.00097 * 174.94872 * 15 14 13 18 18 N 1.31508 * 119.99647 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99846 * 179.97438 * 17 15 14 20 20 H 1.48510 * 109.46754 * 89.99946 * 19 17 15 21 21 H 1.48499 * 109.47269 * 209.99636 * 19 17 15 22 22 H 1.48495 * 109.47514 * 330.00085 * 19 17 15 23 23 C 1.39183 * 120.19998 * 359.76917 * 13 12 11 24 24 C 1.37602 * 120.10210 * 359.97438 * 23 13 12 25 25 C 1.46924 * 118.71591 * 53.35873 * 5 4 2 26 26 C 1.53187 * 108.89130 * 306.63876 * 25 5 4 27 27 C 1.53038 * 109.49641 * 120.05813 * 2 1 3 28 28 H 1.09003 * 109.45030 * 61.33839 * 27 2 1 29 29 O 1.42896 * 109.46652 * 301.37097 * 27 2 1 30 30 H 1.08999 * 109.47088 * 299.93863 * 1 2 3 31 31 H 1.09000 * 109.46743 * 59.93632 * 1 2 3 32 32 H 1.08995 * 109.47224 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.58436 * 305.18964 * 4 2 1 34 34 H 1.09002 * 109.58359 * 65.61406 * 4 2 1 35 35 H 1.07992 * 119.99702 * 5.16950 * 8 6 5 36 36 H 1.07996 * 120.00113 * 0.02562 * 9 8 6 37 37 H 1.07999 * 120.05160 * 359.97438 * 11 10 9 38 38 H 1.08005 * 119.94863 * 180.23600 * 12 11 10 39 39 H 0.97000 * 119.99761 * 180.02562 * 18 17 15 40 40 H 1.08003 * 119.94827 * 179.97438 * 23 13 12 41 41 H 1.07996 * 120.04685 * 180.02562 * 24 23 13 42 42 H 1.08996 * 109.58316 * 186.78132 * 25 5 4 43 43 H 1.08996 * 109.58695 * 66.50092 * 25 5 4 44 44 H 1.08998 * 109.49798 * 174.51497 * 26 25 5 45 45 H 1.08997 * 109.49745 * 294.61010 * 26 25 5 46 46 H 0.96695 * 114.00489 * 179.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7237 -1.2493 5 7 3.5056 -0.8314 -1.1704 6 6 4.2824 -0.3905 -2.1797 7 8 3.7724 0.0140 -3.2083 8 6 5.7382 -0.3980 -2.0390 9 6 6.5125 0.1393 -3.0059 10 6 7.9753 0.1312 -2.8648 11 6 8.5680 -0.4279 -1.7260 12 6 9.9382 -0.4379 -1.6007 13 6 10.7345 0.1159 -2.5987 14 8 12.0839 0.1086 -2.4686 15 6 12.7931 0.7614 -3.4107 16 1 12.2902 1.1896 -4.2652 17 6 14.1690 0.8833 -3.2828 18 7 14.7813 0.3623 -2.2421 19 14 15.1520 1.7874 -4.5888 20 1 15.2409 3.2266 -4.2334 21 1 16.5185 1.2116 -4.6670 22 1 14.4779 1.6431 -5.9041 23 6 10.1497 0.6780 -3.7298 24 6 8.7805 0.6878 -3.8661 25 6 4.1059 -1.4254 0.0318 26 6 3.5708 -0.6938 1.2667 27 6 2.0407 -0.7226 1.2486 28 1 1.6972 -1.7570 1.2354 29 8 1.5385 -0.0690 2.4159 30 1 -0.3633 0.5129 0.8905 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6064 -1.7217 -1.2977 34 1 1.7645 -0.1581 -2.1387 35 1 6.1936 -0.8333 -1.1620 36 1 6.0570 0.5749 -3.8828 37 1 7.9507 -0.8540 -0.9490 38 1 10.3963 -0.8724 -0.7245 39 1 15.7434 0.4478 -2.1524 40 1 10.7715 1.1071 -4.5016 41 1 8.3276 1.1238 -4.7443 42 1 5.1902 -1.3228 -0.0125 43 1 3.8409 -2.4811 0.0891 44 1 3.9333 -1.1882 2.1680 45 1 3.9154 0.3402 1.2547 46 1 1.8224 -0.4745 3.2466 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492665530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:06 Heat of formation + Delta-G solvation = -96.732048 kcal Electronic energy + Delta-G solvation = -27029.282492 eV Core-core repulsion = 23076.797442 eV Total energy + Delta-G solvation = -3952.485050 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.36148 -40.81169 -39.34272 -38.47385 -36.71028 -34.88858 -34.37591 -33.83143 -32.16111 -31.97428 -29.93349 -27.92264 -27.37376 -26.09230 -24.28884 -23.62388 -23.45865 -21.99463 -20.97937 -20.12851 -19.36919 -18.85012 -18.62413 -18.07845 -17.07829 -16.48014 -16.35661 -16.22588 -16.05603 -15.90770 -15.61730 -15.33209 -14.96186 -14.82902 -14.66821 -14.39930 -14.25940 -14.10697 -13.91294 -13.58263 -13.33016 -13.21404 -12.91487 -12.79933 -12.71116 -12.63784 -12.52349 -12.39309 -12.19450 -12.12961 -11.98009 -11.28146 -11.21825 -11.12846 -10.97713 -10.68984 -10.58458 -9.89796 -9.72191 -8.68648 -8.52578 -6.18471 -0.27050 0.58085 1.11289 1.35814 1.45651 1.52592 1.98596 2.15008 2.31299 2.85582 3.16842 3.26976 3.41610 3.51309 3.67839 3.79001 3.90917 3.95372 4.06240 4.10878 4.20778 4.26075 4.28192 4.42173 4.46782 4.53726 4.61944 4.67188 4.70163 4.74531 4.80327 4.91681 4.94021 5.02280 5.06815 5.12920 5.19023 5.23993 5.29578 5.33125 5.35445 5.52682 5.60611 5.63698 5.79798 5.97033 6.09516 6.37130 6.91907 6.93181 7.15554 7.68746 8.69388 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.027841 B = 0.001899 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.476629 B =14739.274460 C =15429.741163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 H 0.055 0.945 4 C 0.119 3.881 5 N -0.611 5.611 6 C 0.549 3.451 7 O -0.595 6.595 8 C -0.251 4.251 9 C 0.018 3.982 10 C -0.171 4.171 11 C -0.036 4.036 12 C -0.206 4.206 13 C 0.130 3.870 14 O -0.218 6.218 15 C -0.417 4.417 16 H 0.105 0.895 17 C -0.018 4.018 18 N -0.913 5.913 19 Si 1.018 2.982 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.253 1.253 23 C -0.249 4.249 24 C -0.040 4.040 25 C 0.100 3.900 26 C -0.164 4.164 27 C 0.113 3.887 28 H 0.075 0.925 29 O -0.582 6.582 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.155 0.845 36 H 0.123 0.877 37 H 0.160 0.840 38 H 0.125 0.875 39 H 0.275 0.725 40 H 0.124 0.876 41 H 0.143 0.857 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.058 0.942 46 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.861 -4.461 7.474 26.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.117 4.117 3 H 0.074 0.926 4 C -0.004 4.004 5 N -0.342 5.342 6 C 0.343 3.657 7 O -0.479 6.479 8 C -0.271 4.271 9 C -0.001 4.001 10 C -0.172 4.172 11 C -0.054 4.054 12 C -0.225 4.225 13 C 0.078 3.922 14 O -0.124 6.124 15 C -0.492 4.492 16 H 0.123 0.877 17 C -0.217 4.217 18 N -0.549 5.549 19 Si 0.837 3.163 20 H -0.188 1.188 21 H -0.195 1.195 22 H -0.176 1.176 23 C -0.268 4.268 24 C -0.058 4.058 25 C -0.022 4.022 26 C -0.202 4.202 27 C 0.054 3.946 28 H 0.092 0.908 29 O -0.390 6.390 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.172 0.828 36 H 0.141 0.859 37 H 0.177 0.823 38 H 0.143 0.857 39 H 0.084 0.916 40 H 0.142 0.858 41 H 0.161 0.839 42 H 0.121 0.879 43 H 0.112 0.888 44 H 0.126 0.874 45 H 0.077 0.923 46 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -25.042 -4.020 6.781 26.253 hybrid contribution 1.187 0.210 -0.143 1.214 sum -23.855 -3.810 6.637 25.052 Atomic orbital electron populations 1.21638 0.92906 1.02786 1.02051 1.21444 0.97499 0.99371 0.93392 0.92609 1.21669 0.79023 1.01590 0.98082 1.48078 1.06855 1.60713 1.18562 1.18594 0.88323 0.76283 0.82519 1.90762 1.76537 1.50447 1.30113 1.22833 0.91362 1.09786 1.03116 1.22189 0.90807 0.90500 0.96650 1.18761 0.92418 1.08545 0.97488 1.21257 0.92501 0.94948 0.96678 1.20423 0.93734 1.08676 0.99637 1.20195 0.84189 0.93353 0.94452 1.83883 1.13920 1.65555 1.48993 1.21889 0.90165 1.34574 1.02591 0.87747 1.26601 0.96775 0.97922 1.00433 1.70144 1.10767 1.43836 1.30194 0.84591 0.77046 0.77806 0.76851 1.18825 1.19535 1.17633 1.21202 0.96219 1.09483 0.99925 1.21311 0.91848 0.94676 0.97976 1.22055 0.99903 0.97945 0.82255 1.22661 0.96451 1.01851 0.99282 1.21767 0.92000 0.95766 0.85047 0.90759 1.86486 1.75914 1.59712 1.16901 0.92109 0.92560 0.91272 0.89447 0.90589 0.82833 0.85921 0.82277 0.85739 0.91584 0.85782 0.83916 0.87931 0.88775 0.87427 0.92317 0.75507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.04 71.98 0.65 -1.12 16 2 C -0.10 -1.48 2.62 -10.72 -0.03 -1.51 16 3 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 4 C 0.12 2.02 5.70 86.35 0.49 2.52 16 5 N -0.61 -11.48 2.98 -824.03 -2.46 -13.94 16 6 C 0.55 14.24 7.61 86.33 0.66 14.89 16 7 O -0.60 -20.09 15.68 -4.43 -0.07 -20.16 16 8 C -0.25 -5.86 8.74 23.62 0.21 -5.65 16 9 C 0.02 0.50 9.45 23.82 0.23 0.72 16 10 C -0.17 -5.29 5.87 -20.13 -0.12 -5.41 16 11 C -0.04 -1.10 9.40 22.55 0.21 -0.89 16 12 C -0.21 -8.02 9.97 22.34 0.22 -7.80 16 13 C 0.13 6.14 6.66 22.72 0.15 6.29 16 14 O -0.22 -12.54 9.74 -20.28 -0.20 -12.74 16 15 C -0.42 -23.29 9.48 67.93 0.64 -22.65 16 16 H 0.11 5.35 5.18 -2.91 -0.02 5.33 16 17 C -0.02 -1.01 5.49 84.86 0.47 -0.54 16 18 N -0.91 -53.98 13.67 21.62 0.30 -53.68 16 19 Si 1.02 41.33 29.55 68.60 2.03 43.36 16 20 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 21 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 23 C -0.25 -10.39 9.14 22.35 0.20 -10.18 16 24 C -0.04 -1.36 9.78 22.55 0.22 -1.14 16 25 C 0.10 1.13 6.34 86.36 0.55 1.68 16 26 C -0.16 -1.62 5.70 30.67 0.17 -1.44 16 27 C 0.11 1.24 2.88 30.62 0.09 1.33 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 O -0.58 -7.02 12.59 -148.98 -1.88 -8.90 16 30 H 0.06 0.88 7.65 -2.39 -0.02 0.87 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.66 7.04 -2.39 -0.02 1.64 16 35 H 0.15 2.69 3.85 -2.91 -0.01 2.68 16 36 H 0.12 3.41 7.53 -2.91 -0.02 3.39 16 37 H 0.16 3.42 6.16 -2.91 -0.02 3.40 16 38 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 39 H 0.28 14.87 8.31 -92.71 -0.77 14.10 16 40 H 0.12 5.24 5.62 -2.91 -0.02 5.23 16 41 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 42 H 0.10 1.04 5.30 -2.39 -0.01 1.03 16 43 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.39 1.39 9.08 -74.06 -0.67 0.72 16 Total: -1.00 -75.13 376.41 3.09 -72.04 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.35 Total: 24.91 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 5.02 Total: -30.89 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: -2.16 Total: -67.62 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -2.14 Total: -41.79 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -75.13 3.09 -72.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492665530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.689 kcal (2) G-P(sol) polarization free energy of solvation -75.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds