Wall clock time and date at job start Tue Mar 31 2020 17:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.51991 * 2 1 4 4 C 1.53192 * 109.49834 * 239.91930 * 2 1 3 5 5 N 1.46955 * 108.89119 * 185.48955 * 4 2 1 6 6 C 1.34775 * 120.65830 * 233.54133 * 5 4 2 7 7 O 1.21723 * 119.99962 * 354.32090 * 6 5 4 8 8 C 1.46256 * 120.00121 * 174.33105 * 6 5 4 9 9 C 1.35019 * 119.99798 * 172.77596 * 8 6 5 10 10 C 1.46965 * 120.00429 * 348.97690 * 9 8 6 11 11 C 1.40026 * 120.09586 * 311.81170 * 10 9 8 12 12 C 1.37603 * 119.89188 * 179.71627 * 11 10 9 13 13 C 1.39179 * 120.09986 * 0.52951 * 12 11 10 14 14 O 1.35572 * 119.89522 * 179.73964 * 13 12 11 15 15 C 1.34778 * 117.00307 * 186.67609 * 14 13 12 16 16 H 1.07999 * 119.99619 * 5.85602 * 15 14 13 17 17 C 1.38717 * 120.00535 * 185.85715 * 15 14 13 18 18 N 1.31507 * 119.99793 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00169 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46932 * 90.00202 * 19 17 15 21 21 H 1.48497 * 109.47340 * 209.99738 * 19 17 15 22 22 H 1.48496 * 109.47364 * 330.00300 * 19 17 15 23 23 C 1.39174 * 120.20637 * 359.76722 * 13 12 11 24 24 C 1.37597 * 120.09780 * 359.95194 * 23 13 12 25 25 C 1.46931 * 118.71079 * 53.35550 * 5 4 2 26 26 C 1.53193 * 108.89495 * 306.64163 * 25 5 4 27 27 C 1.53036 * 109.30926 * 54.56757 * 26 25 5 28 28 H 1.08998 * 109.45651 * 178.61400 * 27 26 25 29 29 O 1.42899 * 109.46186 * 58.65367 * 27 26 25 30 30 H 1.09003 * 109.47137 * 299.91905 * 1 2 3 31 31 H 1.09005 * 109.47478 * 59.92151 * 1 2 3 32 32 H 1.09007 * 109.47066 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.58592 * 305.20474 * 4 2 1 34 34 H 1.09007 * 109.58695 * 65.62373 * 4 2 1 35 35 H 1.08002 * 119.99821 * 352.76888 * 8 6 5 36 36 H 1.08004 * 120.00163 * 168.97850 * 9 8 6 37 37 H 1.07998 * 120.05153 * 359.96858 * 11 10 9 38 38 H 1.08001 * 119.94620 * 180.27885 * 12 11 10 39 39 H 0.96995 * 120.00362 * 180.02562 * 18 17 15 40 40 H 1.08000 * 119.94822 * 179.97438 * 23 13 12 41 41 H 1.08000 * 120.04776 * 180.02562 * 24 23 13 42 42 H 1.09006 * 109.58469 * 186.78571 * 25 5 4 43 43 H 1.09000 * 109.58489 * 66.50463 * 25 5 4 44 44 H 1.09005 * 109.49356 * 174.51763 * 26 25 5 45 45 H 1.08993 * 109.49471 * 294.61263 * 26 25 5 46 46 H 0.96693 * 113.99784 * 60.00031 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5048 -0.8322 -1.1713 6 6 4.2815 -0.3914 -2.1806 7 8 3.7717 0.0068 -3.2118 8 6 5.7370 -0.3917 -2.0372 9 6 6.5197 -0.0897 -3.0951 10 6 5.9344 0.0011 -4.4401 11 6 5.0913 -1.0139 -4.9090 12 6 4.5409 -0.9217 -6.1668 13 6 4.8298 0.1726 -6.9767 14 8 4.2895 0.2566 -8.2172 15 6 4.7146 1.2658 -9.0028 16 1 5.5202 1.9048 -8.6724 17 6 4.1174 1.4840 -10.2357 18 7 3.1361 0.7064 -10.6378 19 14 4.7062 2.8833 -11.3242 20 1 5.7904 2.3956 -12.2141 21 1 3.5748 3.3791 -12.1484 22 1 5.2215 3.9875 -10.4755 23 6 5.6722 1.1807 -6.5172 24 6 6.2225 1.0999 -5.2587 25 6 4.1052 -1.4267 0.0308 26 6 3.5708 -0.6950 1.2660 27 6 2.0408 -0.7231 1.2483 28 1 1.6582 -0.2246 2.1389 29 8 1.5897 -2.0790 1.2312 30 1 -0.3633 0.5126 0.8907 31 1 -0.3634 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6052 -1.7216 -1.2980 34 1 1.7637 -0.1579 -2.1389 35 1 6.1857 -0.6333 -1.0849 36 1 7.5760 0.0851 -2.9530 37 1 4.8701 -1.8656 -4.2828 38 1 3.8869 -1.7018 -6.5275 39 1 2.7187 0.8586 -11.5000 40 1 5.8939 2.0279 -7.1493 41 1 6.8758 1.8828 -4.9028 42 1 5.1896 -1.3245 -0.0138 43 1 3.8397 -2.4823 0.0879 44 1 3.9334 -1.1897 2.1671 45 1 3.9159 0.3388 1.2540 46 1 1.8759 -2.5983 1.9949 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492665532.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:15 Heat of formation + Delta-G solvation = -58.270681 kcal Electronic energy + Delta-G solvation = -28165.285211 eV Core-core repulsion = 24214.467971 eV Total energy + Delta-G solvation = -3950.817240 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.37862 -39.02803 -38.30099 -36.47067 -35.33925 -33.70174 -32.92173 -32.06577 -31.35598 -30.08080 -28.32243 -26.82792 -25.63469 -25.19793 -22.77814 -22.66036 -21.73250 -20.83407 -19.93916 -18.40543 -17.85639 -17.45885 -17.20538 -16.74499 -15.75922 -15.36951 -15.09629 -14.92968 -14.52634 -14.38786 -14.21076 -13.93807 -13.60518 -13.51910 -13.36814 -13.25975 -12.92517 -12.74355 -12.47013 -12.28799 -12.18032 -12.02135 -11.69572 -11.65114 -11.56850 -11.25653 -11.15592 -10.97055 -10.66332 -10.57355 -10.54353 -10.37556 -10.22770 -9.46240 -9.34371 -9.11854 -8.68255 -8.51647 -7.91541 -6.84663 -6.42272 -3.98202 1.30880 2.45162 2.68782 3.11699 3.15797 3.16733 3.21188 3.62025 3.92352 4.00019 4.31857 4.42135 4.65559 4.71563 4.72408 4.87411 5.03052 5.08780 5.16989 5.23325 5.23757 5.36435 5.36797 5.45086 5.45806 5.57153 5.64000 5.70418 5.77124 5.78291 5.88974 5.93769 5.97224 6.17888 6.28309 6.34330 6.44168 6.58111 6.68598 6.82921 7.07083 7.15628 7.30934 7.38829 7.47239 7.53942 7.61580 7.95903 8.04237 8.56041 9.03437 9.76355 10.75841 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.019541 B = 0.002527 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.528075 B =11076.009143 C =11890.934209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.082 0.918 4 C 0.123 3.877 5 N -0.617 5.617 6 C 0.541 3.459 7 O -0.510 6.510 8 C -0.264 4.264 9 C 0.025 3.975 10 C -0.181 4.181 11 C 0.000 4.000 12 C -0.198 4.198 13 C 0.169 3.831 14 O -0.174 6.174 15 C -0.389 4.389 16 H 0.093 0.907 17 C 0.039 3.961 18 N -0.861 5.861 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.245 4.245 24 C -0.045 4.045 25 C 0.114 3.886 26 C -0.171 4.171 27 C 0.111 3.889 28 H 0.054 0.946 29 O -0.559 6.559 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.270 0.730 40 H 0.126 0.874 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.131 -3.227 26.163 26.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.101 0.899 4 C 0.001 3.999 5 N -0.352 5.352 6 C 0.333 3.667 7 O -0.385 6.385 8 C -0.285 4.285 9 C 0.005 3.995 10 C -0.182 4.182 11 C -0.018 4.018 12 C -0.217 4.217 13 C 0.114 3.886 14 O -0.077 6.077 15 C -0.465 4.465 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.265 4.265 24 C -0.063 4.063 25 C -0.009 4.009 26 C -0.209 4.209 27 C 0.052 3.948 28 H 0.072 0.928 29 O -0.364 6.364 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.119 0.881 38 H 0.132 0.868 39 H 0.080 0.920 40 H 0.143 0.857 41 H 0.123 0.877 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 1.245 -2.965 24.664 24.873 hybrid contribution 0.583 0.637 0.391 0.947 sum 1.827 -2.329 25.054 25.229 Atomic orbital electron populations 1.21699 0.93841 1.02724 1.01740 1.21537 0.96819 0.99145 0.94280 0.89926 1.21479 0.79533 1.01058 0.97875 1.48032 1.06471 1.62203 1.18507 1.18487 0.87866 0.77654 0.82720 1.90994 1.75115 1.46021 1.26415 1.22751 0.92775 1.13248 0.99699 1.22360 0.97958 0.87353 0.91793 1.18280 1.06826 0.99021 0.94051 1.20427 0.91929 0.96267 0.93221 1.20005 1.07172 0.99204 0.95333 1.19527 0.90795 0.92672 0.85594 1.83928 1.57370 1.47274 1.19090 1.21366 1.17957 1.09403 0.97818 0.89000 1.25318 0.95732 0.98581 0.96962 1.70021 1.22071 1.36855 1.20562 0.85706 0.78334 0.79847 0.79513 1.19856 1.20258 1.19172 1.20958 1.05907 1.01810 0.97800 1.20706 0.97074 0.95753 0.92785 1.21585 0.98333 0.97155 0.83837 1.22661 0.97075 1.02452 0.98726 1.21762 0.92167 0.83190 0.97708 0.92760 1.86555 1.77871 1.22714 1.49274 0.92747 0.92238 0.91603 0.91141 0.89004 0.85972 0.86089 0.88141 0.86831 0.91987 0.85676 0.87678 0.89547 0.91257 0.90633 0.90515 0.77922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.07 37.16 0.34 -0.93 16 2 C -0.10 -0.95 2.71 -90.50 -0.24 -1.19 16 3 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 4 C 0.12 1.54 5.46 -3.69 -0.02 1.52 16 5 N -0.62 -7.69 2.98 -174.43 -0.52 -8.21 16 6 C 0.54 8.47 6.81 -13.04 -0.09 8.38 16 7 O -0.51 -10.37 11.94 5.17 0.06 -10.31 16 8 C -0.26 -3.45 9.22 -37.51 -0.35 -3.79 16 9 C 0.02 0.36 9.77 -37.19 -0.36 -0.01 16 10 C -0.18 -3.42 4.34 -105.03 -0.46 -3.87 16 11 C 0.00 0.00 6.78 -39.14 -0.27 -0.26 16 12 C -0.20 -4.65 9.97 -39.46 -0.39 -5.04 16 13 C 0.17 4.37 6.65 -38.88 -0.26 4.12 16 14 O -0.17 -5.20 9.74 0.74 0.01 -5.19 16 15 C -0.39 -11.24 9.42 30.91 0.29 -10.95 16 16 H 0.09 2.46 5.31 -52.49 -0.28 2.18 16 17 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 18 N -0.86 -25.86 13.67 55.48 0.76 -25.11 16 19 Si 0.94 20.99 29.55 -169.99 -5.02 15.97 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 C -0.25 -5.72 9.10 -39.47 -0.36 -6.08 16 24 C -0.04 -0.89 9.78 -39.15 -0.38 -1.27 16 25 C 0.11 0.97 6.10 -3.71 -0.02 0.95 16 26 C -0.17 -1.10 5.81 -26.61 -0.15 -1.26 16 27 C 0.11 0.81 3.19 -26.69 -0.09 0.73 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 O -0.56 -4.18 11.43 -35.23 -0.40 -4.58 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.62 7.72 -51.92 -0.40 0.22 16 33 H 0.07 0.90 7.81 -51.93 -0.41 0.50 16 34 H 0.09 1.38 7.04 -51.93 -0.37 1.02 16 35 H 0.12 1.14 5.92 -52.49 -0.31 0.83 16 36 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 37 H 0.10 1.89 7.46 -52.49 -0.39 1.50 16 38 H 0.11 2.60 8.06 -52.49 -0.42 2.18 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.13 2.89 5.72 -52.49 -0.30 2.59 16 41 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 42 H 0.09 0.63 5.32 -51.93 -0.28 0.35 16 43 H 0.07 0.57 7.81 -51.93 -0.41 0.17 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.37 1.27 9.08 45.56 0.41 1.68 16 LS Contribution 370.84 15.07 5.59 5.59 Total: -1.00 -35.22 370.84 -8.10 -43.32 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.66 Total: 6.51 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -2.91 Total: -17.98 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.24 Total: -33.32 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.33 Total: -20.08 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.22 -8.10 -43.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492665532.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.955 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds