Wall clock time and date at job start Tue Mar 31 2020 17:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.51991 * 2 1 4 4 C 1.53192 * 109.49834 * 239.91930 * 2 1 3 5 5 N 1.46955 * 108.89119 * 185.48955 * 4 2 1 6 6 C 1.34775 * 120.65830 * 233.54133 * 5 4 2 7 7 O 1.21723 * 119.99962 * 354.32090 * 6 5 4 8 8 C 1.46256 * 120.00121 * 174.33105 * 6 5 4 9 9 C 1.35019 * 119.99798 * 172.77596 * 8 6 5 10 10 C 1.46965 * 120.00429 * 348.97690 * 9 8 6 11 11 C 1.40026 * 120.09586 * 311.81170 * 10 9 8 12 12 C 1.37603 * 119.89188 * 179.71627 * 11 10 9 13 13 C 1.39179 * 120.09986 * 0.52951 * 12 11 10 14 14 O 1.35572 * 119.89522 * 179.73964 * 13 12 11 15 15 C 1.34778 * 117.00307 * 186.67609 * 14 13 12 16 16 H 1.07999 * 119.99619 * 5.85602 * 15 14 13 17 17 C 1.38717 * 120.00535 * 185.85715 * 15 14 13 18 18 N 1.31507 * 119.99793 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00169 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46932 * 90.00202 * 19 17 15 21 21 H 1.48497 * 109.47340 * 209.99738 * 19 17 15 22 22 H 1.48496 * 109.47364 * 330.00300 * 19 17 15 23 23 C 1.39174 * 120.20637 * 359.76722 * 13 12 11 24 24 C 1.37597 * 120.09780 * 359.95194 * 23 13 12 25 25 C 1.46931 * 118.71079 * 53.35550 * 5 4 2 26 26 C 1.53193 * 108.89495 * 306.64163 * 25 5 4 27 27 C 1.53036 * 109.30926 * 54.56757 * 26 25 5 28 28 H 1.08998 * 109.45651 * 178.61400 * 27 26 25 29 29 O 1.42899 * 109.46186 * 58.65367 * 27 26 25 30 30 H 1.09003 * 109.47137 * 299.91905 * 1 2 3 31 31 H 1.09005 * 109.47478 * 59.92151 * 1 2 3 32 32 H 1.09007 * 109.47066 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.58592 * 305.20474 * 4 2 1 34 34 H 1.09007 * 109.58695 * 65.62373 * 4 2 1 35 35 H 1.08002 * 119.99821 * 352.76888 * 8 6 5 36 36 H 1.08004 * 120.00163 * 168.97850 * 9 8 6 37 37 H 1.07998 * 120.05153 * 359.96858 * 11 10 9 38 38 H 1.08001 * 119.94620 * 180.27885 * 12 11 10 39 39 H 0.96995 * 120.00362 * 180.02562 * 18 17 15 40 40 H 1.08000 * 119.94822 * 179.97438 * 23 13 12 41 41 H 1.08000 * 120.04776 * 180.02562 * 24 23 13 42 42 H 1.09006 * 109.58469 * 186.78571 * 25 5 4 43 43 H 1.09000 * 109.58489 * 66.50463 * 25 5 4 44 44 H 1.09005 * 109.49356 * 174.51763 * 26 25 5 45 45 H 1.08993 * 109.49471 * 294.61263 * 26 25 5 46 46 H 0.96693 * 113.99784 * 60.00031 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5048 -0.8322 -1.1713 6 6 4.2815 -0.3914 -2.1806 7 8 3.7717 0.0068 -3.2118 8 6 5.7370 -0.3917 -2.0372 9 6 6.5197 -0.0897 -3.0951 10 6 5.9344 0.0011 -4.4401 11 6 5.0913 -1.0139 -4.9090 12 6 4.5409 -0.9217 -6.1668 13 6 4.8298 0.1726 -6.9767 14 8 4.2895 0.2566 -8.2172 15 6 4.7146 1.2658 -9.0028 16 1 5.5202 1.9048 -8.6724 17 6 4.1174 1.4840 -10.2357 18 7 3.1361 0.7064 -10.6378 19 14 4.7062 2.8833 -11.3242 20 1 5.7904 2.3956 -12.2141 21 1 3.5748 3.3791 -12.1484 22 1 5.2215 3.9875 -10.4755 23 6 5.6722 1.1807 -6.5172 24 6 6.2225 1.0999 -5.2587 25 6 4.1052 -1.4267 0.0308 26 6 3.5708 -0.6950 1.2660 27 6 2.0408 -0.7231 1.2483 28 1 1.6582 -0.2246 2.1389 29 8 1.5897 -2.0790 1.2312 30 1 -0.3633 0.5126 0.8907 31 1 -0.3634 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6052 -1.7216 -1.2980 34 1 1.7637 -0.1579 -2.1389 35 1 6.1857 -0.6333 -1.0849 36 1 7.5760 0.0851 -2.9530 37 1 4.8701 -1.8656 -4.2828 38 1 3.8869 -1.7018 -6.5275 39 1 2.7187 0.8586 -11.5000 40 1 5.8939 2.0279 -7.1493 41 1 6.8758 1.8828 -4.9028 42 1 5.1896 -1.3245 -0.0138 43 1 3.8397 -2.4823 0.0879 44 1 3.9334 -1.1897 2.1671 45 1 3.9159 0.3388 1.2540 46 1 1.8759 -2.5983 1.9949 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492665532.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:14 Heat of formation + Delta-G solvation = -83.546734 kcal Electronic energy + Delta-G solvation = -28166.381262 eV Core-core repulsion = 24214.467971 eV Total energy + Delta-G solvation = -3951.913292 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.42303 -40.66944 -39.47417 -38.10898 -36.25600 -34.75914 -34.37805 -33.77619 -32.08047 -31.82442 -29.84500 -27.88561 -27.31612 -26.35986 -24.12165 -23.47613 -23.36701 -22.24030 -20.82747 -19.92714 -19.43810 -18.74370 -18.42609 -17.81760 -16.95974 -16.39838 -16.30672 -16.17227 -15.98093 -15.72957 -15.52282 -15.44024 -14.96689 -14.71273 -14.58542 -14.48834 -14.35440 -13.94528 -13.71305 -13.59627 -13.56610 -13.10518 -12.93519 -12.87559 -12.66831 -12.40575 -12.33847 -12.23350 -12.13896 -12.08101 -11.96231 -11.29658 -11.29301 -10.94489 -10.79868 -10.54571 -10.39576 -9.75911 -9.42075 -8.59296 -8.49295 -6.16387 0.02543 0.69230 1.07002 1.32867 1.44727 1.51696 2.13523 2.16857 2.44160 2.85456 3.20401 3.38940 3.49694 3.64078 3.76306 3.90691 3.95679 3.99511 4.11280 4.12687 4.16094 4.32544 4.41047 4.52955 4.55624 4.58676 4.62500 4.73054 4.78349 4.81750 4.85184 4.95656 5.03800 5.08822 5.10762 5.12566 5.20116 5.24869 5.25833 5.41094 5.42831 5.63262 5.67332 5.71728 5.82621 6.01363 6.23988 6.56825 6.94844 7.00868 7.38009 7.77525 8.74641 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.019541 B = 0.002527 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.528075 B =11076.009143 C =11890.934209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 H 0.078 0.922 4 C 0.123 3.877 5 N -0.610 5.610 6 C 0.524 3.476 7 O -0.572 6.572 8 C -0.230 4.230 9 C 0.006 3.994 10 C -0.151 4.151 11 C 0.001 3.999 12 C -0.217 4.217 13 C 0.124 3.876 14 O -0.232 6.232 15 C -0.415 4.415 16 H 0.102 0.898 17 C -0.025 4.025 18 N -0.922 5.922 19 Si 1.023 2.977 20 H -0.260 1.260 21 H -0.270 1.270 22 H -0.252 1.252 23 C -0.253 4.253 24 C -0.050 4.050 25 C 0.104 3.896 26 C -0.163 4.163 27 C 0.114 3.886 28 H 0.074 0.926 29 O -0.577 6.577 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.176 0.824 36 H 0.173 0.827 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.273 0.727 40 H 0.120 0.880 41 H 0.148 0.852 42 H 0.109 0.891 43 H 0.075 0.925 44 H 0.111 0.889 45 H 0.076 0.924 46 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.126 -2.610 31.314 31.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 H 0.096 0.904 4 C 0.000 4.000 5 N -0.343 5.343 6 C 0.316 3.684 7 O -0.452 6.452 8 C -0.250 4.250 9 C -0.013 4.013 10 C -0.152 4.152 11 C -0.018 4.018 12 C -0.236 4.236 13 C 0.074 3.926 14 O -0.139 6.139 15 C -0.491 4.491 16 H 0.120 0.880 17 C -0.222 4.222 18 N -0.560 5.560 19 Si 0.841 3.159 20 H -0.184 1.184 21 H -0.195 1.195 22 H -0.176 1.176 23 C -0.272 4.272 24 C -0.068 4.068 25 C -0.017 4.017 26 C -0.201 4.201 27 C 0.055 3.945 28 H 0.092 0.908 29 O -0.385 6.385 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.193 0.807 36 H 0.190 0.810 37 H 0.135 0.865 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.138 0.862 41 H 0.166 0.834 42 H 0.127 0.873 43 H 0.093 0.907 44 H 0.129 0.871 45 H 0.095 0.905 46 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 4.270 -2.393 29.948 30.346 hybrid contribution -0.360 0.248 -0.652 0.785 sum 3.910 -2.145 29.296 29.633 Atomic orbital electron populations 1.21671 0.93673 1.02344 1.02011 1.21509 0.97008 0.98903 0.94178 0.90358 1.21392 0.80160 1.00370 0.98077 1.48165 1.06244 1.60733 1.19156 1.19197 0.89473 0.77234 0.82486 1.90995 1.76355 1.48961 1.28934 1.23165 0.90766 1.09413 1.01668 1.22622 1.00489 0.89200 0.89027 1.18870 1.03408 0.96784 0.96090 1.20644 0.91757 0.97523 0.91827 1.20183 1.07975 0.98754 0.96737 1.19991 0.92608 0.94567 0.85465 1.83889 1.59977 1.48938 1.21078 1.21874 1.18847 1.09667 0.98677 0.88043 1.26700 0.95695 1.01617 0.98233 1.70180 1.24509 1.39779 1.21570 0.84540 0.78135 0.76008 0.77187 1.18434 1.19514 1.17580 1.21100 1.05735 1.00945 0.99447 1.21157 0.97134 0.97123 0.91421 1.21965 0.99454 0.97514 0.82755 1.22641 0.95959 1.02571 0.98928 1.21705 0.93007 0.83191 0.96587 0.90818 1.86522 1.78283 1.22917 1.50784 0.90889 0.93578 0.92249 0.91917 0.92883 0.80692 0.80995 0.86525 0.88181 0.91760 0.86220 0.83405 0.87333 0.90669 0.87066 0.90515 0.75667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.07 71.98 0.65 -1.77 16 2 C -0.10 -1.74 2.71 -10.72 -0.03 -1.77 16 3 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 4 C 0.12 3.09 5.46 86.36 0.47 3.57 16 5 N -0.61 -13.86 2.98 -823.99 -2.46 -16.31 16 6 C 0.52 15.24 6.81 86.33 0.59 15.83 16 7 O -0.57 -23.48 11.94 -4.42 -0.05 -23.53 16 8 C -0.23 -4.76 9.22 23.61 0.22 -4.54 16 9 C 0.01 0.14 9.77 23.82 0.23 0.37 16 10 C -0.15 -5.39 4.34 -20.13 -0.09 -5.48 16 11 C 0.00 0.03 6.78 22.55 0.15 0.18 16 12 C -0.22 -10.96 9.97 22.35 0.22 -10.73 16 13 C 0.12 6.95 6.65 22.72 0.15 7.10 16 14 O -0.23 -15.20 9.74 -20.26 -0.20 -15.40 16 15 C -0.41 -25.68 9.42 67.93 0.64 -25.04 16 16 H 0.10 5.76 5.31 -2.91 -0.02 5.75 16 17 C -0.03 -1.51 5.49 84.86 0.47 -1.04 16 18 N -0.92 -59.45 13.67 21.62 0.30 -59.15 16 19 Si 1.02 44.78 29.55 68.60 2.03 46.81 16 20 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 23 C -0.25 -12.23 9.10 22.34 0.20 -12.03 16 24 C -0.05 -1.93 9.78 22.55 0.22 -1.71 16 25 C 0.10 1.28 6.10 86.36 0.53 1.81 16 26 C -0.16 -1.26 5.81 30.67 0.18 -1.09 16 27 C 0.11 1.27 3.19 30.62 0.10 1.37 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 29 O -0.58 -6.78 11.43 -148.98 -1.70 -8.48 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.06 1.10 7.72 -2.38 -0.02 1.09 16 33 H 0.06 1.65 7.81 -2.39 -0.02 1.63 16 34 H 0.05 1.73 7.04 -2.38 -0.02 1.71 16 35 H 0.18 1.84 5.92 -2.91 -0.02 1.82 16 36 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 37 H 0.12 4.35 7.46 -2.91 -0.02 4.33 16 38 H 0.10 5.11 8.06 -2.91 -0.02 5.08 16 39 H 0.27 16.05 8.31 -92.71 -0.77 15.27 16 40 H 0.12 5.78 5.72 -2.91 -0.02 5.76 16 41 H 0.15 4.37 8.06 -2.91 -0.02 4.35 16 42 H 0.11 0.84 5.32 -2.38 -0.01 0.82 16 43 H 0.08 0.90 7.81 -2.39 -0.02 0.89 16 44 H 0.11 0.18 8.14 -2.38 -0.02 0.16 16 45 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.39 1.08 9.08 -74.06 -0.67 0.41 16 Total: -1.00 -88.33 370.84 3.15 -85.18 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.33 Total: 25.87 kcal Atomic # 6 Polarization: -39.88 SS G_CDS: 4.91 Total: -34.98 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -2.16 Total: -75.46 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -1.95 Total: -47.42 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -88.33 3.15 -85.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492665532.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.632 kcal (2) G-P(sol) polarization free energy of solvation -88.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds