Wall clock time and date at job start Tue Mar 31 2020 16:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.47070 * 2 1 4 4 C 1.52995 * 109.47312 * 239.99990 * 2 1 3 5 5 N 1.46500 * 109.47101 * 59.99542 * 4 2 1 6 6 C 1.34780 * 120.00085 * 180.02562 * 5 4 2 7 7 O 1.21727 * 119.99701 * 0.02562 * 6 5 4 8 8 C 1.46250 * 120.00001 * 180.27770 * 6 5 4 9 9 C 1.35025 * 119.99872 * 172.93753 * 8 6 5 10 10 C 1.46960 * 119.99925 * 348.68575 * 9 8 6 11 11 C 1.40028 * 120.10009 * 316.40557 * 10 9 8 12 12 C 1.37594 * 119.89430 * 179.72348 * 11 10 9 13 13 C 1.39178 * 120.10545 * 0.57472 * 12 11 10 14 14 O 1.35570 * 119.89974 * 179.70498 * 13 12 11 15 15 C 1.34784 * 116.99709 * 174.33776 * 14 13 12 16 16 H 1.08003 * 120.00118 * 5.06382 * 15 14 13 17 17 C 1.38719 * 120.00009 * 185.05536 * 15 14 13 18 18 N 1.31512 * 119.99551 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00225 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47071 * 60.00202 * 19 17 15 21 21 H 1.48498 * 109.47062 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.46892 * 300.00176 * 19 17 15 23 23 C 1.39179 * 120.19889 * 359.67528 * 13 12 11 24 24 C 1.37596 * 120.10342 * 0.04860 * 23 13 12 25 25 C 1.53003 * 109.47089 * 119.99518 * 2 1 3 26 26 C 1.52997 * 117.49940 * 13.75155 * 25 2 1 27 27 C 1.52998 * 117.49998 * 305.08816 * 25 2 1 28 28 H 1.09000 * 109.46814 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47179 * 299.99851 * 1 2 3 30 30 H 1.09000 * 109.47133 * 59.99977 * 1 2 3 31 31 H 0.96696 * 114.00004 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47004 * 299.99807 * 4 2 1 33 33 H 1.08994 * 109.47448 * 180.02562 * 4 2 1 34 34 H 0.96995 * 120.00304 * 0.02562 * 5 4 2 35 35 H 1.07994 * 119.99828 * 352.93725 * 8 6 5 36 36 H 1.07997 * 120.00191 * 168.68458 * 9 8 6 37 37 H 1.08001 * 120.04804 * 359.97438 * 11 10 9 38 38 H 1.08010 * 119.94843 * 180.27620 * 12 11 10 39 39 H 0.97006 * 119.99836 * 179.97438 * 18 17 15 40 40 H 1.08002 * 119.94590 * 180.02562 * 23 13 12 41 41 H 1.07995 * 120.05096 * 180.02562 * 24 23 13 42 42 H 1.09005 * 115.54735 * 159.41805 * 25 2 1 43 43 H 1.09006 * 117.49978 * 359.97438 * 26 25 2 44 44 H 1.09004 * 117.49933 * 145.02099 * 26 25 2 45 45 H 1.09006 * 117.49893 * 214.97980 * 27 25 2 46 46 H 1.09002 * 117.50307 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.5516 -0.0307 -2.4454 6 6 1.8768 -0.4914 -3.6695 7 8 2.5760 -1.4816 -3.7811 8 6 1.3943 0.2015 -4.8636 9 6 1.8337 -0.1718 -6.0846 10 6 2.9714 -1.0942 -6.2058 11 6 4.1029 -0.9235 -5.3988 12 6 5.1633 -1.7929 -5.5117 13 6 5.1175 -2.8336 -6.4347 14 8 6.1671 -3.6843 -6.5467 15 6 6.0149 -4.7384 -7.3728 16 1 5.1204 -4.8310 -7.9709 17 6 7.0073 -5.7042 -7.4548 18 7 8.0963 -5.5915 -6.7262 19 14 6.7967 -7.1648 -8.6002 20 1 6.6501 -6.6816 -9.9967 21 1 7.9883 -8.0457 -8.5032 22 1 5.5842 -7.9284 -8.2107 23 6 3.9970 -3.0040 -7.2426 24 6 2.9295 -2.1429 -7.1327 25 6 2.0400 -0.7212 1.2493 26 6 1.0327 -1.5532 2.0454 27 6 1.5400 -0.2224 2.6065 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.9703 1.4237 -0.0004 32 1 1.6767 -1.7489 -1.2492 33 1 3.1300 -0.7216 -1.2490 34 1 0.9942 0.7581 -2.3564 35 1 0.6865 1.0116 -4.7688 36 1 1.3491 0.2075 -6.9721 37 1 4.1414 -0.1130 -4.6859 38 1 6.0347 -1.6647 -4.8865 39 1 8.7901 -6.2671 -6.7833 40 1 3.9656 -3.8133 -7.9572 41 1 2.0604 -2.2761 -7.7597 42 1 3.0647 -1.0887 1.1945 43 1 0.0064 -1.5865 1.6794 44 1 1.3947 -2.4679 2.5148 45 1 2.2356 -0.2622 3.4448 46 1 0.8473 0.6193 2.6095 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492951434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:06 Heat of formation + Delta-G solvation = -32.338458 kcal Electronic energy + Delta-G solvation = -27587.161522 eV Core-core repulsion = 23637.468788 eV Total energy + Delta-G solvation = -3949.692734 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.16807 -39.29020 -38.55972 -36.52958 -35.91434 -34.22891 -33.01830 -32.11816 -30.83685 -30.10000 -28.25891 -27.06470 -25.41643 -24.08651 -22.79396 -22.32095 -21.72873 -20.83999 -20.16489 -19.23917 -17.92588 -17.33103 -17.22866 -16.61839 -16.21927 -15.64911 -15.22375 -14.73048 -14.59038 -14.48295 -14.20504 -14.08882 -13.65074 -13.45754 -13.29963 -13.16622 -12.97956 -12.77393 -12.70296 -12.41522 -12.18076 -12.07197 -11.68076 -11.60280 -11.35896 -11.19018 -10.97764 -10.89986 -10.67044 -10.62933 -10.55876 -10.40565 -10.22981 -9.47446 -9.38676 -9.14306 -8.93584 -8.67445 -7.90158 -6.84217 -6.44331 -4.00153 1.27408 2.44306 2.72605 3.14307 3.17017 3.17442 3.18428 3.44915 3.67272 3.98416 4.02789 4.19168 4.37552 4.52252 4.66523 4.71634 4.75480 4.98633 5.10696 5.15665 5.25541 5.26817 5.37460 5.38921 5.44119 5.50776 5.59538 5.62309 5.69959 5.73442 5.76191 5.78027 5.86858 5.90727 6.26841 6.35486 6.46130 6.54288 6.62105 6.80986 7.05616 7.13855 7.30570 7.38214 7.47278 7.52127 7.71861 7.94260 8.02363 8.58107 9.01277 9.73438 10.73533 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014807 B = 0.002450 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.492741 B =11424.359282 C =12624.284643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.153 3.847 3 O -0.554 6.554 4 C 0.101 3.899 5 N -0.730 5.730 6 C 0.537 3.463 7 O -0.513 6.513 8 C -0.266 4.266 9 C 0.026 3.974 10 C -0.189 4.189 11 C 0.013 3.987 12 C -0.203 4.203 13 C 0.171 3.829 14 O -0.173 6.173 15 C -0.390 4.390 16 H 0.093 0.907 17 C 0.039 3.961 18 N -0.861 5.861 19 Si 0.942 3.058 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.269 1.269 23 C -0.251 4.251 24 C -0.042 4.042 25 C -0.187 4.187 26 C -0.176 4.176 27 C -0.164 4.164 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.380 0.620 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.398 0.602 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.271 0.729 40 H 0.126 0.874 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.733 12.719 12.985 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.112 3.888 3 O -0.360 6.360 4 C -0.024 4.024 5 N -0.384 5.384 6 C 0.327 3.673 7 O -0.389 6.389 8 C -0.287 4.287 9 C 0.007 3.993 10 C -0.190 4.190 11 C -0.006 4.006 12 C -0.222 4.222 13 C 0.116 3.884 14 O -0.075 6.075 15 C -0.466 4.466 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.270 4.270 24 C -0.060 4.060 25 C -0.206 4.206 26 C -0.213 4.213 27 C -0.201 4.201 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.228 0.772 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.233 0.767 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.119 0.881 38 H 0.131 0.869 39 H 0.081 0.919 40 H 0.143 0.857 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.121 0.879 44 H 0.114 0.886 45 H 0.112 0.888 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.389 11.959 13.053 23.456 hybrid contribution 0.173 -0.555 -0.399 0.705 sum -15.215 11.404 12.654 22.840 Atomic orbital electron populations 1.21884 0.92437 1.02742 1.02951 1.20839 0.94840 0.81925 0.91204 1.86523 1.27187 1.25391 1.96879 1.21851 0.99609 0.96893 0.84021 1.45880 1.55161 1.32169 1.05194 1.18513 0.80324 0.85042 0.83406 1.91002 1.36095 1.25824 1.86004 1.22589 1.08030 1.05273 0.92811 1.22330 0.90742 0.90273 0.95976 1.18294 0.95552 1.01188 1.03928 1.20431 0.91267 0.96033 0.92844 1.19998 1.00894 0.98371 1.02961 1.19524 0.86949 0.89922 0.91983 1.83906 1.32873 1.32459 1.58295 1.21347 1.06100 0.99073 1.20103 0.88953 1.25321 0.94837 0.98453 0.97943 1.70018 1.06997 1.34740 1.37773 0.85770 0.78216 0.79773 0.79622 1.19445 1.20263 1.19460 1.20949 0.95718 1.04437 1.05892 1.20743 0.96516 0.93518 0.95253 1.22918 1.00066 1.04819 0.92813 1.23149 0.99415 0.95306 1.03461 1.22887 1.03680 0.97871 0.95671 0.90515 0.91569 0.91662 0.77233 0.90699 0.91322 0.76692 0.86199 0.86094 0.88145 0.86900 0.91924 0.85668 0.87616 0.87259 0.87945 0.88590 0.88776 0.88422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 7.33 37.16 0.27 -0.77 16 2 C 0.15 1.23 0.88 -90.62 -0.08 1.15 16 3 O -0.55 -4.57 12.70 -35.23 -0.45 -5.01 16 4 C 0.10 1.08 4.78 -4.04 -0.02 1.06 16 5 N -0.73 -8.18 5.14 -61.76 -0.32 -8.49 16 6 C 0.54 8.01 6.77 -13.04 -0.09 7.92 16 7 O -0.51 -10.07 12.18 5.16 0.06 -10.01 16 8 C -0.27 -3.42 9.90 -37.51 -0.37 -3.79 16 9 C 0.03 0.38 9.80 -37.19 -0.36 0.01 16 10 C -0.19 -3.54 4.54 -105.02 -0.48 -4.01 16 11 C 0.01 0.26 6.59 -39.15 -0.26 0.00 16 12 C -0.20 -4.71 9.97 -39.47 -0.39 -5.10 16 13 C 0.17 4.40 6.66 -38.88 -0.26 4.14 16 14 O -0.17 -5.13 9.74 0.73 0.01 -5.12 16 15 C -0.39 -11.20 9.48 30.91 0.29 -10.91 16 16 H 0.09 2.45 5.18 -52.48 -0.27 2.18 16 17 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 18 N -0.86 -25.67 13.67 55.48 0.76 -24.92 16 19 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 C -0.25 -5.78 9.14 -39.47 -0.36 -6.15 16 24 C -0.04 -0.83 9.78 -39.15 -0.38 -1.21 16 25 C -0.19 -1.42 5.32 -90.62 -0.48 -1.90 16 26 C -0.18 -1.21 9.66 -26.69 -0.26 -1.47 16 27 C -0.16 -1.11 9.86 -26.69 -0.26 -1.37 16 28 H 0.08 0.53 6.74 -51.93 -0.35 0.18 16 29 H 0.07 0.45 6.96 -51.93 -0.36 0.09 16 30 H 0.06 0.47 6.86 -51.93 -0.36 0.12 16 31 H 0.38 2.30 9.05 45.56 0.41 2.71 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.40 3.60 7.17 -40.82 -0.29 3.31 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 37 H 0.10 1.86 7.02 -52.49 -0.37 1.49 16 38 H 0.11 2.55 8.06 -52.48 -0.42 2.13 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.13 2.85 5.62 -52.49 -0.29 2.56 16 41 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 42 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.10 0.65 5.89 -51.93 -0.31 0.34 16 44 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.10 0.67 7.28 -51.93 -0.38 0.29 16 LS Contribution 379.29 15.07 5.72 5.72 Total: -1.00 -34.38 379.29 -8.34 -42.72 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -5.51 Total: 10.69 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -3.59 Total: -21.42 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.44 Total: -33.41 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.38 Total: -20.14 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.38 -8.34 -42.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492951434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.381 kcal (2) G-P(sol) polarization free energy of solvation -34.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds