Wall clock time and date at job start Tue Mar 31 2020 16:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.47070 * 2 1 4 4 C 1.52995 * 109.47312 * 239.99990 * 2 1 3 5 5 N 1.46500 * 109.47101 * 59.99542 * 4 2 1 6 6 C 1.34780 * 120.00085 * 180.02562 * 5 4 2 7 7 O 1.21727 * 119.99701 * 0.02562 * 6 5 4 8 8 C 1.46250 * 120.00001 * 180.27770 * 6 5 4 9 9 C 1.35025 * 119.99872 * 172.93753 * 8 6 5 10 10 C 1.46960 * 119.99925 * 348.68575 * 9 8 6 11 11 C 1.40028 * 120.10009 * 316.40557 * 10 9 8 12 12 C 1.37594 * 119.89430 * 179.72348 * 11 10 9 13 13 C 1.39178 * 120.10545 * 0.57472 * 12 11 10 14 14 O 1.35570 * 119.89974 * 179.70498 * 13 12 11 15 15 C 1.34784 * 116.99709 * 174.33776 * 14 13 12 16 16 H 1.08003 * 120.00118 * 5.06382 * 15 14 13 17 17 C 1.38719 * 120.00009 * 185.05536 * 15 14 13 18 18 N 1.31512 * 119.99551 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00225 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47071 * 60.00202 * 19 17 15 21 21 H 1.48498 * 109.47062 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.46892 * 300.00176 * 19 17 15 23 23 C 1.39179 * 120.19889 * 359.67528 * 13 12 11 24 24 C 1.37596 * 120.10342 * 0.04860 * 23 13 12 25 25 C 1.53003 * 109.47089 * 119.99518 * 2 1 3 26 26 C 1.52997 * 117.49940 * 13.75155 * 25 2 1 27 27 C 1.52998 * 117.49998 * 305.08816 * 25 2 1 28 28 H 1.09000 * 109.46814 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47179 * 299.99851 * 1 2 3 30 30 H 1.09000 * 109.47133 * 59.99977 * 1 2 3 31 31 H 0.96696 * 114.00004 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47004 * 299.99807 * 4 2 1 33 33 H 1.08994 * 109.47448 * 180.02562 * 4 2 1 34 34 H 0.96995 * 120.00304 * 0.02562 * 5 4 2 35 35 H 1.07994 * 119.99828 * 352.93725 * 8 6 5 36 36 H 1.07997 * 120.00191 * 168.68458 * 9 8 6 37 37 H 1.08001 * 120.04804 * 359.97438 * 11 10 9 38 38 H 1.08010 * 119.94843 * 180.27620 * 12 11 10 39 39 H 0.97006 * 119.99836 * 179.97438 * 18 17 15 40 40 H 1.08002 * 119.94590 * 180.02562 * 23 13 12 41 41 H 1.07995 * 120.05096 * 180.02562 * 24 23 13 42 42 H 1.09005 * 115.54735 * 159.41805 * 25 2 1 43 43 H 1.09006 * 117.49978 * 359.97438 * 26 25 2 44 44 H 1.09004 * 117.49933 * 145.02099 * 26 25 2 45 45 H 1.09006 * 117.49893 * 214.97980 * 27 25 2 46 46 H 1.09002 * 117.50307 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.5516 -0.0307 -2.4454 6 6 1.8768 -0.4914 -3.6695 7 8 2.5760 -1.4816 -3.7811 8 6 1.3943 0.2015 -4.8636 9 6 1.8337 -0.1718 -6.0846 10 6 2.9714 -1.0942 -6.2058 11 6 4.1029 -0.9235 -5.3988 12 6 5.1633 -1.7929 -5.5117 13 6 5.1175 -2.8336 -6.4347 14 8 6.1671 -3.6843 -6.5467 15 6 6.0149 -4.7384 -7.3728 16 1 5.1204 -4.8310 -7.9709 17 6 7.0073 -5.7042 -7.4548 18 7 8.0963 -5.5915 -6.7262 19 14 6.7967 -7.1648 -8.6002 20 1 6.6501 -6.6816 -9.9967 21 1 7.9883 -8.0457 -8.5032 22 1 5.5842 -7.9284 -8.2107 23 6 3.9970 -3.0040 -7.2426 24 6 2.9295 -2.1429 -7.1327 25 6 2.0400 -0.7212 1.2493 26 6 1.0327 -1.5532 2.0454 27 6 1.5400 -0.2224 2.6065 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.9703 1.4237 -0.0004 32 1 1.6767 -1.7489 -1.2492 33 1 3.1300 -0.7216 -1.2490 34 1 0.9942 0.7581 -2.3564 35 1 0.6865 1.0116 -4.7688 36 1 1.3491 0.2075 -6.9721 37 1 4.1414 -0.1130 -4.6859 38 1 6.0347 -1.6647 -4.8865 39 1 8.7901 -6.2671 -6.7833 40 1 3.9656 -3.8133 -7.9572 41 1 2.0604 -2.2761 -7.7597 42 1 3.0647 -1.0887 1.1945 43 1 0.0064 -1.5865 1.6794 44 1 1.3947 -2.4679 2.5148 45 1 2.2356 -0.2622 3.4448 46 1 0.8473 0.6193 2.6095 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492951434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:05 Heat of formation + Delta-G solvation = -57.186999 kcal Electronic energy + Delta-G solvation = -27588.239036 eV Core-core repulsion = 23637.468788 eV Total energy + Delta-G solvation = -3950.770248 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.23311 -40.63658 -39.91153 -38.16991 -36.64127 -35.26336 -34.58809 -33.91668 -31.82275 -31.63321 -29.68812 -28.03898 -27.35807 -25.08013 -23.75580 -23.42133 -23.17274 -22.19610 -21.00117 -20.35211 -19.77364 -18.91601 -18.14823 -17.91030 -17.03896 -16.62016 -16.44633 -16.35275 -16.13341 -15.66144 -15.54367 -15.38098 -15.18100 -14.76463 -14.54304 -14.44130 -14.19042 -13.95666 -13.72228 -13.55980 -13.48694 -13.32515 -13.01402 -12.81718 -12.62232 -12.37256 -12.23711 -12.13751 -12.13076 -11.84095 -11.49807 -11.24410 -11.15441 -11.03712 -10.87535 -10.62426 -10.39081 -10.03887 -9.56796 -8.55562 -8.48566 -6.16021 -0.00437 0.71471 1.12903 1.33067 1.46658 1.50314 2.17077 2.28943 2.48694 2.78378 2.86899 3.20610 3.40866 3.50309 3.52361 3.72462 3.88063 4.00313 4.06130 4.08624 4.14509 4.16326 4.18438 4.33817 4.54406 4.59716 4.64705 4.73888 4.76728 4.77947 4.84698 4.95739 5.01860 5.05457 5.09429 5.12629 5.25164 5.25618 5.26983 5.31302 5.46160 5.51915 5.67868 5.72405 5.84990 6.02069 6.24973 6.68358 6.75552 6.95091 7.45166 7.77253 8.74392 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014807 B = 0.002450 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.492741 B =11424.359282 C =12624.284643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.165 3.835 3 O -0.559 6.559 4 C 0.101 3.899 5 N -0.708 5.708 6 C 0.524 3.476 7 O -0.569 6.569 8 C -0.231 4.231 9 C 0.005 3.995 10 C -0.160 4.160 11 C 0.015 3.985 12 C -0.221 4.221 13 C 0.127 3.873 14 O -0.231 6.231 15 C -0.416 4.416 16 H 0.103 0.897 17 C -0.024 4.024 18 N -0.922 5.922 19 Si 1.022 2.978 20 H -0.254 1.254 21 H -0.270 1.270 22 H -0.259 1.259 23 C -0.259 4.259 24 C -0.048 4.048 25 C -0.200 4.200 26 C -0.177 4.177 27 C -0.156 4.156 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.388 0.612 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.414 0.586 35 H 0.172 0.828 36 H 0.169 0.831 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.273 0.727 40 H 0.120 0.880 41 H 0.148 0.852 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.099 0.901 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.070 15.019 12.893 28.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.124 3.876 3 O -0.366 6.366 4 C -0.024 4.024 5 N -0.362 5.362 6 C 0.315 3.685 7 O -0.450 6.450 8 C -0.252 4.252 9 C -0.014 4.014 10 C -0.161 4.161 11 C -0.004 4.004 12 C -0.241 4.241 13 C 0.076 3.924 14 O -0.137 6.137 15 C -0.492 4.492 16 H 0.120 0.880 17 C -0.221 4.221 18 N -0.559 5.559 19 Si 0.840 3.160 20 H -0.178 1.178 21 H -0.194 1.194 22 H -0.183 1.183 23 C -0.278 4.278 24 C -0.066 4.066 25 C -0.219 4.219 26 C -0.214 4.214 27 C -0.193 4.193 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.238 0.762 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.252 0.748 35 H 0.190 0.810 36 H 0.187 0.813 37 H 0.136 0.864 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.138 0.862 41 H 0.166 0.834 42 H 0.120 0.880 43 H 0.128 0.872 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.799 14.353 12.998 27.693 hybrid contribution 1.182 -0.878 -0.096 1.476 sum -18.616 13.475 12.901 26.355 Atomic orbital electron populations 1.21917 0.91411 1.03189 1.03584 1.20690 0.95416 0.81614 0.89840 1.86502 1.28171 1.25189 1.96770 1.21877 0.98738 0.96649 0.85122 1.45739 1.53966 1.31998 1.04458 1.19127 0.79749 0.84587 0.85043 1.91010 1.38707 1.28382 1.86878 1.23049 1.06874 1.04314 0.90928 1.22576 0.90134 0.90182 0.98520 1.18879 0.96135 1.00320 1.00763 1.20655 0.90838 0.95671 0.93190 1.20175 1.01845 0.99102 1.02953 1.20010 0.87800 0.90615 0.94006 1.83874 1.35172 1.34135 1.60531 1.21855 1.06975 0.99724 1.20665 0.88019 1.26681 0.94126 1.01551 0.99790 1.70175 1.08472 1.36514 1.40789 0.84617 0.78615 0.75280 0.77478 1.17791 1.19427 1.18287 1.21096 0.96088 1.05191 1.05455 1.21188 0.96655 0.92660 0.96077 1.22897 1.00017 1.05760 0.93239 1.23238 0.99568 0.95498 1.03096 1.22922 1.03498 0.97812 0.95033 0.90207 0.90749 0.91221 0.76231 0.92214 0.92918 0.74846 0.81041 0.81329 0.86389 0.88150 0.91751 0.86187 0.83389 0.88049 0.87157 0.88504 0.88228 0.88053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 7.33 71.98 0.53 -1.18 16 2 C 0.17 2.37 0.88 -10.79 -0.01 2.36 16 3 O -0.56 -7.89 12.70 -148.98 -1.89 -9.78 16 4 C 0.10 2.05 4.78 86.38 0.41 2.46 16 5 N -0.71 -13.79 5.14 -467.50 -2.40 -16.19 16 6 C 0.52 14.02 6.77 86.32 0.58 14.60 16 7 O -0.57 -21.83 12.18 -4.44 -0.05 -21.88 16 8 C -0.23 -4.62 9.90 23.61 0.23 -4.38 16 9 C 0.01 0.12 9.80 23.82 0.23 0.35 16 10 C -0.16 -5.61 4.54 -20.13 -0.09 -5.70 16 11 C 0.01 0.59 6.59 22.55 0.15 0.74 16 12 C -0.22 -10.91 9.97 22.34 0.22 -10.69 16 13 C 0.13 6.95 6.66 22.72 0.15 7.10 16 14 O -0.23 -14.89 9.74 -20.29 -0.20 -15.09 16 15 C -0.42 -25.54 9.48 67.93 0.64 -24.90 16 16 H 0.10 5.72 5.18 -2.91 -0.02 5.71 16 17 C -0.02 -1.43 5.49 84.86 0.47 -0.96 16 18 N -0.92 -58.74 13.67 21.62 0.30 -58.45 16 19 Si 1.02 44.37 29.55 68.60 2.03 46.39 16 20 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 22 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 23 C -0.26 -12.31 9.14 22.34 0.20 -12.11 16 24 C -0.05 -1.80 9.78 22.55 0.22 -1.58 16 25 C -0.20 -2.82 5.32 -10.79 -0.06 -2.88 16 26 C -0.18 -2.18 9.66 30.62 0.30 -1.88 16 27 C -0.16 -1.83 9.86 30.62 0.30 -1.53 16 28 H 0.08 0.90 6.74 -2.39 -0.02 0.89 16 29 H 0.07 0.79 6.96 -2.39 -0.02 0.77 16 30 H 0.07 0.75 6.86 -2.39 -0.02 0.74 16 31 H 0.39 4.02 9.05 -74.06 -0.67 3.35 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.41 5.68 7.17 -92.71 -0.66 5.01 16 35 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 37 H 0.12 4.24 7.02 -2.91 -0.02 4.22 16 38 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 39 H 0.27 15.91 8.31 -92.70 -0.77 15.14 16 40 H 0.12 5.69 5.62 -2.91 -0.02 5.67 16 41 H 0.15 4.28 8.06 -2.91 -0.02 4.25 16 42 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.11 1.17 5.89 -2.38 -0.01 1.16 16 44 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.10 1.14 7.28 -2.39 -0.02 1.12 16 Total: -1.00 -83.42 379.29 1.96 -81.47 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: -0.31 Total: 33.70 kcal Atomic # 6 Polarization: -44.65 SS G_CDS: 4.49 Total: -40.16 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -2.11 Total: -74.64 kcal Atomic # 8 Polarization: -44.61 SS G_CDS: -2.14 Total: -46.76 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -83.42 1.96 -81.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492951434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.280 kcal (2) G-P(sol) polarization free energy of solvation -83.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds