Wall clock time and date at job start Tue Mar 31 2020 16:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.46976 * 2 1 4 4 C 1.53000 * 109.46733 * 239.99988 * 2 1 3 5 5 N 1.46495 * 109.47618 * 60.00062 * 4 2 1 6 6 C 1.34770 * 120.00491 * 179.97438 * 5 4 2 7 7 O 1.21722 * 119.99697 * 0.02562 * 6 5 4 8 8 C 1.46250 * 120.00046 * 179.97438 * 6 5 4 9 9 C 1.35031 * 119.99722 * 180.02562 * 8 6 5 10 10 C 1.46959 * 119.99891 * 180.27844 * 9 8 6 11 11 C 1.40027 * 120.10020 * 359.44219 * 10 9 8 12 12 C 1.37601 * 119.89865 * 179.79365 * 11 10 9 13 13 C 1.39178 * 120.09610 * 0.48590 * 12 11 10 14 14 O 1.35575 * 119.89259 * 179.76441 * 13 12 11 15 15 C 1.34788 * 116.99533 * 174.42515 * 14 13 12 16 16 H 1.08001 * 120.00124 * 5.05799 * 15 14 13 17 17 C 1.38720 * 119.99795 * 185.06035 * 15 14 13 18 18 N 1.31506 * 120.00124 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99835 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47167 * 90.00581 * 19 17 15 21 21 H 1.48508 * 109.46838 * 210.00252 * 19 17 15 22 22 H 1.48498 * 109.46985 * 330.00109 * 19 17 15 23 23 C 1.39170 * 120.20621 * 359.74800 * 13 12 11 24 24 C 1.37600 * 120.10262 * 0.02562 * 23 13 12 25 25 C 1.52997 * 109.46950 * 120.00089 * 2 1 3 26 26 C 1.53000 * 117.50314 * 13.74750 * 25 2 1 27 27 C 1.53003 * 117.50263 * 305.08447 * 25 2 1 28 28 H 1.08999 * 109.46924 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47101 * 299.99332 * 1 2 3 30 30 H 1.08994 * 109.47246 * 60.00222 * 1 2 3 31 31 H 0.96700 * 113.99609 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47341 * 299.99653 * 4 2 1 33 33 H 1.09009 * 109.46551 * 180.02562 * 4 2 1 34 34 H 0.96999 * 119.99771 * 359.97438 * 5 4 2 35 35 H 1.08000 * 120.00173 * 359.97438 * 8 6 5 36 36 H 1.08000 * 120.00105 * 359.97438 * 9 8 6 37 37 H 1.08005 * 120.04941 * 0.02562 * 11 10 9 38 38 H 1.07995 * 119.95289 * 180.23378 * 12 11 10 39 39 H 0.96995 * 120.00217 * 179.97438 * 18 17 15 40 40 H 1.08006 * 119.94848 * 179.97438 * 23 13 12 41 41 H 1.07997 * 120.05056 * 180.02562 * 24 23 13 42 42 H 1.09008 * 115.54977 * 159.42158 * 25 2 1 43 43 H 1.08995 * 117.49870 * 359.97438 * 26 25 2 44 44 H 1.08996 * 117.49803 * 145.02342 * 26 25 2 45 45 H 1.08997 * 117.50185 * 214.99038 * 27 25 2 46 46 H 1.09005 * 117.49250 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 1.5516 -0.0307 -2.4454 6 6 1.8776 -0.4909 -3.6695 7 8 2.5773 -1.4806 -3.7812 8 6 1.3896 0.1982 -4.8636 9 6 1.7157 -0.2632 -6.0900 10 6 1.2305 0.4328 -7.2899 11 6 0.4201 1.5678 -7.1640 12 6 -0.0285 2.2187 -8.2902 13 6 0.3138 1.7447 -9.5532 14 8 -0.1344 2.3865 -10.6601 15 6 0.3249 1.9486 -11.8493 16 1 0.9530 1.0713 -11.8958 17 6 -0.0093 2.6249 -13.0135 18 7 0.4391 2.1980 -14.1737 19 14 -1.0963 4.1420 -12.9331 20 1 -0.2486 5.3502 -12.7696 21 1 -1.8822 4.2548 -14.1881 22 1 -2.0222 4.0268 -11.7779 23 6 1.1150 0.6142 -9.6833 24 6 1.5720 -0.0405 -8.5627 25 6 2.0400 -0.7213 1.2492 26 6 1.0326 -1.5533 2.0454 27 6 1.5400 -0.2226 2.6066 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 2.9703 1.4236 -0.0004 32 1 1.6766 -1.7489 -1.2493 33 1 3.1300 -0.7217 -1.2490 34 1 0.9937 0.7577 -2.3565 35 1 0.7677 1.0756 -4.7645 36 1 2.3373 -1.1408 -6.1891 37 1 0.1507 1.9339 -6.1842 38 1 -0.6504 3.0964 -8.1940 39 1 0.2052 2.6706 -14.9878 40 1 1.3777 0.2497 -10.6655 41 1 2.1940 -0.9175 -8.6646 42 1 3.0648 -1.0888 1.1945 43 1 0.0065 -1.5866 1.6794 44 1 1.3947 -2.4680 2.5147 45 1 2.2357 -0.2623 3.4447 46 1 0.8474 0.6191 2.6094 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492951438.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:18 Heat of formation + Delta-G solvation = -48.716212 kcal Electronic energy + Delta-G solvation = -26377.372875 eV Core-core repulsion = 22426.969948 eV Total energy + Delta-G solvation = -3950.402927 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.26654 -39.40000 -38.99023 -37.05652 -36.11832 -34.45479 -33.23903 -32.46617 -30.98702 -30.52188 -28.65043 -27.25702 -25.63288 -24.15120 -22.92600 -22.51276 -22.21777 -20.76970 -20.20881 -19.35900 -18.14601 -17.51167 -17.31684 -17.23808 -16.33786 -15.79170 -15.47973 -15.03499 -14.88499 -14.69818 -14.27334 -14.08842 -14.00214 -13.95659 -13.56182 -13.41490 -12.90473 -12.84344 -12.80251 -12.60843 -12.40358 -12.27913 -11.87137 -11.80166 -11.72042 -11.33159 -11.19675 -11.03706 -11.01974 -10.76309 -10.69693 -10.40275 -10.27294 -9.82405 -9.65733 -9.54566 -9.18224 -8.90941 -8.46571 -7.23810 -6.60074 -4.23898 0.99333 2.03844 2.47894 3.01029 3.12005 3.15961 3.28957 3.29286 3.52494 3.90469 4.03558 4.09089 4.24069 4.38699 4.43421 4.52565 4.61760 4.63697 4.82734 4.94303 4.97666 5.13721 5.17958 5.26198 5.30983 5.37804 5.43255 5.43827 5.48625 5.56864 5.60040 5.61919 5.66102 5.78962 5.94508 6.02748 6.27866 6.31999 6.43792 6.53649 6.67925 6.93268 7.09290 7.16617 7.18793 7.42140 7.51524 7.63096 7.84453 8.29804 8.73276 9.33541 10.46201 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.031927 B = 0.001670 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.781233 B =16766.061489 C =17373.870668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.152 3.848 3 O -0.551 6.551 4 C 0.101 3.899 5 N -0.727 5.727 6 C 0.554 3.446 7 O -0.560 6.560 8 C -0.277 4.277 9 C 0.035 3.965 10 C -0.189 4.189 11 C -0.045 4.045 12 C -0.199 4.199 13 C 0.173 3.827 14 O -0.202 6.202 15 C -0.392 4.392 16 H 0.111 0.889 17 C 0.066 3.934 18 N -0.867 5.867 19 Si 0.907 3.093 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.258 1.258 23 C -0.230 4.230 24 C -0.037 4.037 25 C -0.188 4.188 26 C -0.177 4.177 27 C -0.163 4.163 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.379 0.621 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.403 0.597 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.283 0.717 40 H 0.137 0.863 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.923 -3.598 28.952 29.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.111 3.889 3 O -0.358 6.358 4 C -0.024 4.024 5 N -0.379 5.379 6 C 0.346 3.654 7 O -0.441 6.441 8 C -0.298 4.298 9 C 0.015 3.985 10 C -0.190 4.190 11 C -0.064 4.064 12 C -0.218 4.218 13 C 0.119 3.881 14 O -0.105 6.105 15 C -0.467 4.467 16 H 0.128 0.872 17 C -0.139 4.139 18 N -0.503 5.503 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.182 1.182 23 C -0.249 4.249 24 C -0.055 4.055 25 C -0.207 4.207 26 C -0.213 4.213 27 C -0.200 4.200 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.227 0.773 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.239 0.761 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.093 0.907 40 H 0.155 0.845 41 H 0.135 0.865 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.114 0.886 45 H 0.112 0.888 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.618 -3.938 28.558 28.835 hybrid contribution 0.098 0.729 -0.149 0.750 sum 0.716 -3.209 28.409 28.599 Atomic orbital electron populations 1.21901 0.92243 1.02818 1.03241 1.20847 0.95031 0.81994 0.91023 1.86559 1.27108 1.25241 1.96845 1.21878 0.99429 0.96927 0.84172 1.45756 1.54673 1.32451 1.05039 1.18419 0.79601 0.83763 0.83596 1.90780 1.39109 1.26974 1.87192 1.22456 1.10497 1.04984 0.91885 1.22302 0.90319 0.94759 0.91091 1.18528 1.07750 1.00464 0.92283 1.20891 0.94722 0.93516 0.97222 1.20148 1.08246 1.03668 0.89788 1.19365 0.90965 0.90726 0.87067 1.83508 1.60125 1.53544 1.13356 1.20880 1.31980 1.13787 0.80051 0.87197 1.24535 0.97058 0.98779 0.93526 1.69613 1.42594 1.40116 0.97947 0.86161 0.80688 0.81641 0.78356 1.19643 1.20517 1.18203 1.21221 1.05042 0.98863 0.99751 1.21043 0.95899 0.97352 0.91247 1.22907 0.99905 1.04954 0.92926 1.23155 0.99473 0.95295 1.03413 1.22895 1.03670 0.97932 0.95522 0.90470 0.91413 0.91479 0.77299 0.90668 0.91456 0.76097 0.85855 0.85788 0.86227 0.86112 0.90662 0.84500 0.86527 0.87389 0.87852 0.88627 0.88751 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 7.33 37.16 0.27 -0.64 16 2 C 0.15 1.00 0.88 -90.62 -0.08 0.92 16 3 O -0.55 -3.90 12.70 -35.23 -0.45 -4.35 16 4 C 0.10 0.87 4.78 -4.04 -0.02 0.85 16 5 N -0.73 -7.27 5.14 -61.76 -0.32 -7.59 16 6 C 0.55 7.54 7.74 -13.04 -0.10 7.44 16 7 O -0.56 -9.59 16.23 5.17 0.08 -9.50 16 8 C -0.28 -3.65 9.41 -37.50 -0.35 -4.01 16 9 C 0.04 0.52 9.45 -37.19 -0.35 0.17 16 10 C -0.19 -3.11 5.87 -105.03 -0.62 -3.72 16 11 C -0.05 -0.73 9.40 -39.14 -0.37 -1.10 16 12 C -0.20 -3.70 9.97 -39.47 -0.39 -4.10 16 13 C 0.17 3.79 6.66 -38.89 -0.26 3.53 16 14 O -0.20 -5.07 8.57 0.70 0.01 -5.06 16 15 C -0.39 -10.52 9.94 30.91 0.31 -10.22 16 16 H 0.11 3.00 5.41 -52.49 -0.28 2.72 16 17 C 0.07 1.78 5.49 -17.51 -0.10 1.68 16 18 N -0.87 -23.95 13.96 55.48 0.77 -23.17 16 19 Si 0.91 20.63 28.62 -169.99 -4.86 15.76 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 23 C -0.23 -4.70 9.14 -39.47 -0.36 -5.06 16 24 C -0.04 -0.65 9.78 -39.15 -0.38 -1.03 16 25 C -0.19 -1.07 5.32 -90.62 -0.48 -1.55 16 26 C -0.18 -0.90 9.66 -26.69 -0.26 -1.16 16 27 C -0.16 -0.86 9.86 -26.69 -0.26 -1.12 16 28 H 0.08 0.43 6.74 -51.93 -0.35 0.08 16 29 H 0.07 0.41 6.96 -51.93 -0.36 0.05 16 30 H 0.07 0.44 6.86 -51.93 -0.36 0.09 16 31 H 0.38 1.73 9.05 45.56 0.41 2.15 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.40 3.40 7.17 -40.82 -0.29 3.10 16 35 H 0.12 1.38 6.07 -52.49 -0.32 1.06 16 36 H 0.12 1.83 7.52 -52.49 -0.39 1.44 16 37 H 0.12 1.54 6.16 -52.48 -0.32 1.22 16 38 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 39 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.14 2.92 5.62 -52.48 -0.29 2.63 16 41 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 42 H 0.11 0.58 8.14 -51.92 -0.42 0.15 16 43 H 0.10 0.50 5.89 -51.93 -0.31 0.19 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.10 0.56 7.28 -51.93 -0.38 0.18 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -30.64 383.08 -8.14 -38.78 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.34 Total: 8.48 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -3.80 Total: -19.13 kcal Atomic # 7 Polarization: -31.22 SS G_CDS: 0.46 Total: -30.76 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.36 Total: -18.91 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.86 Total: 15.76 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.64 -8.14 -38.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492951438.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.936 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds