Wall clock time and date at job start Tue Mar 31 2020 16:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.46976 * 2 1 4 4 C 1.53000 * 109.46733 * 239.99988 * 2 1 3 5 5 N 1.46495 * 109.47618 * 60.00062 * 4 2 1 6 6 C 1.34770 * 120.00491 * 179.97438 * 5 4 2 7 7 O 1.21722 * 119.99697 * 0.02562 * 6 5 4 8 8 C 1.46250 * 120.00046 * 179.97438 * 6 5 4 9 9 C 1.35031 * 119.99722 * 180.02562 * 8 6 5 10 10 C 1.46959 * 119.99891 * 180.27844 * 9 8 6 11 11 C 1.40027 * 120.10020 * 359.44219 * 10 9 8 12 12 C 1.37601 * 119.89865 * 179.79365 * 11 10 9 13 13 C 1.39178 * 120.09610 * 0.48590 * 12 11 10 14 14 O 1.35575 * 119.89259 * 179.76441 * 13 12 11 15 15 C 1.34788 * 116.99533 * 174.42515 * 14 13 12 16 16 H 1.08001 * 120.00124 * 5.05799 * 15 14 13 17 17 C 1.38720 * 119.99795 * 185.06035 * 15 14 13 18 18 N 1.31506 * 120.00124 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99835 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47167 * 90.00581 * 19 17 15 21 21 H 1.48508 * 109.46838 * 210.00252 * 19 17 15 22 22 H 1.48498 * 109.46985 * 330.00109 * 19 17 15 23 23 C 1.39170 * 120.20621 * 359.74800 * 13 12 11 24 24 C 1.37600 * 120.10262 * 0.02562 * 23 13 12 25 25 C 1.52997 * 109.46950 * 120.00089 * 2 1 3 26 26 C 1.53000 * 117.50314 * 13.74750 * 25 2 1 27 27 C 1.53003 * 117.50263 * 305.08447 * 25 2 1 28 28 H 1.08999 * 109.46924 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47101 * 299.99332 * 1 2 3 30 30 H 1.08994 * 109.47246 * 60.00222 * 1 2 3 31 31 H 0.96700 * 113.99609 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47341 * 299.99653 * 4 2 1 33 33 H 1.09009 * 109.46551 * 180.02562 * 4 2 1 34 34 H 0.96999 * 119.99771 * 359.97438 * 5 4 2 35 35 H 1.08000 * 120.00173 * 359.97438 * 8 6 5 36 36 H 1.08000 * 120.00105 * 359.97438 * 9 8 6 37 37 H 1.08005 * 120.04941 * 0.02562 * 11 10 9 38 38 H 1.07995 * 119.95289 * 180.23378 * 12 11 10 39 39 H 0.96995 * 120.00217 * 179.97438 * 18 17 15 40 40 H 1.08006 * 119.94848 * 179.97438 * 23 13 12 41 41 H 1.07997 * 120.05056 * 180.02562 * 24 23 13 42 42 H 1.09008 * 115.54977 * 159.42158 * 25 2 1 43 43 H 1.08995 * 117.49870 * 359.97438 * 26 25 2 44 44 H 1.08996 * 117.49803 * 145.02342 * 26 25 2 45 45 H 1.08997 * 117.50185 * 214.99038 * 27 25 2 46 46 H 1.09005 * 117.49250 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 1.5516 -0.0307 -2.4454 6 6 1.8776 -0.4909 -3.6695 7 8 2.5773 -1.4806 -3.7812 8 6 1.3896 0.1982 -4.8636 9 6 1.7157 -0.2632 -6.0900 10 6 1.2305 0.4328 -7.2899 11 6 0.4201 1.5678 -7.1640 12 6 -0.0285 2.2187 -8.2902 13 6 0.3138 1.7447 -9.5532 14 8 -0.1344 2.3865 -10.6601 15 6 0.3249 1.9486 -11.8493 16 1 0.9530 1.0713 -11.8958 17 6 -0.0093 2.6249 -13.0135 18 7 0.4391 2.1980 -14.1737 19 14 -1.0963 4.1420 -12.9331 20 1 -0.2486 5.3502 -12.7696 21 1 -1.8822 4.2548 -14.1881 22 1 -2.0222 4.0268 -11.7779 23 6 1.1150 0.6142 -9.6833 24 6 1.5720 -0.0405 -8.5627 25 6 2.0400 -0.7213 1.2492 26 6 1.0326 -1.5533 2.0454 27 6 1.5400 -0.2226 2.6066 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 2.9703 1.4236 -0.0004 32 1 1.6766 -1.7489 -1.2493 33 1 3.1300 -0.7217 -1.2490 34 1 0.9937 0.7577 -2.3565 35 1 0.7677 1.0756 -4.7645 36 1 2.3373 -1.1408 -6.1891 37 1 0.1507 1.9339 -6.1842 38 1 -0.6504 3.0964 -8.1940 39 1 0.2052 2.6706 -14.9878 40 1 1.3777 0.2497 -10.6655 41 1 2.1940 -0.9175 -8.6646 42 1 3.0648 -1.0888 1.1945 43 1 0.0065 -1.5866 1.6794 44 1 1.3947 -2.4680 2.5147 45 1 2.2357 -0.2623 3.4447 46 1 0.8474 0.6191 2.6094 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492951438.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:17 Heat of formation + Delta-G solvation = -69.057426 kcal Electronic energy + Delta-G solvation = -26378.254936 eV Core-core repulsion = 22426.969948 eV Total energy + Delta-G solvation = -3951.284988 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.11115 -40.88502 -39.88354 -38.59021 -36.65293 -35.30839 -34.76325 -34.18647 -32.01511 -31.64260 -29.93943 -28.09242 -27.32576 -25.07161 -23.87450 -23.57246 -23.16274 -21.92406 -20.96867 -20.45888 -19.71215 -19.16168 -18.36726 -17.92275 -17.12204 -16.69658 -16.56868 -16.43270 -16.01736 -15.79060 -15.65423 -15.47589 -15.35865 -14.91432 -14.69684 -14.37547 -14.25153 -14.06436 -13.93801 -13.57249 -13.36803 -13.32066 -13.17469 -12.82405 -12.72498 -12.62897 -12.35930 -12.11247 -11.93970 -11.83072 -11.46750 -11.30964 -11.17289 -11.15911 -11.09631 -10.75860 -10.67836 -10.09590 -9.91920 -8.74219 -8.53663 -6.25511 -0.28382 0.54955 1.10445 1.32571 1.37357 1.52360 2.20083 2.26265 2.35325 2.79326 2.80431 3.00400 3.15199 3.43424 3.49724 3.71822 3.83352 3.89408 3.92546 4.04686 4.10627 4.16974 4.27529 4.33142 4.36057 4.45915 4.61151 4.66109 4.75167 4.78978 4.83696 4.86285 4.97537 5.04045 5.11553 5.15534 5.20957 5.27624 5.28056 5.32946 5.38925 5.44781 5.58498 5.70416 5.79917 5.83384 6.14349 6.57649 6.78269 6.79499 7.27051 7.50643 8.57156 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.031927 B = 0.001670 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.781233 B =16766.061489 C =17373.870668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.162 3.838 3 O -0.561 6.561 4 C 0.100 3.900 5 N -0.707 5.707 6 C 0.548 3.452 7 O -0.596 6.596 8 C -0.239 4.239 9 C 0.011 3.989 10 C -0.160 4.160 11 C -0.040 4.040 12 C -0.194 4.194 13 C 0.136 3.864 14 O -0.233 6.233 15 C -0.405 4.405 16 H 0.084 0.916 17 C 0.013 3.987 18 N -0.917 5.917 19 Si 0.971 3.029 20 H -0.265 1.265 21 H -0.268 1.268 22 H -0.260 1.260 23 C -0.243 4.243 24 C -0.046 4.046 25 C -0.194 4.194 26 C -0.177 4.177 27 C -0.161 4.161 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.389 0.611 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.415 0.585 35 H 0.155 0.845 36 H 0.122 0.878 37 H 0.166 0.834 38 H 0.139 0.861 39 H 0.286 0.714 40 H 0.113 0.887 41 H 0.139 0.861 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.219 -2.827 33.495 33.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.121 3.879 3 O -0.369 6.369 4 C -0.025 4.025 5 N -0.359 5.359 6 C 0.339 3.661 7 O -0.480 6.480 8 C -0.260 4.260 9 C -0.009 4.009 10 C -0.161 4.161 11 C -0.058 4.058 12 C -0.213 4.213 13 C 0.085 3.915 14 O -0.139 6.139 15 C -0.480 4.480 16 H 0.101 0.899 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.793 3.207 20 H -0.190 1.190 21 H -0.193 1.193 22 H -0.184 1.184 23 C -0.262 4.262 24 C -0.064 4.064 25 C -0.213 4.213 26 C -0.213 4.213 27 C -0.198 4.198 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.239 0.761 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.253 0.747 35 H 0.172 0.828 36 H 0.140 0.860 37 H 0.183 0.817 38 H 0.157 0.843 39 H 0.096 0.904 40 H 0.131 0.869 41 H 0.156 0.844 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.082 -3.165 33.189 33.340 hybrid contribution 0.474 0.261 -0.917 1.065 sum 0.392 -2.905 32.272 32.405 Atomic orbital electron populations 1.21949 0.91912 1.03288 1.03357 1.20724 0.95173 0.81717 0.90253 1.86540 1.28251 1.25335 1.96789 1.21992 0.99301 0.96832 0.84358 1.45662 1.53491 1.32264 1.04494 1.18558 0.79425 0.83419 0.84689 1.90785 1.40784 1.28637 1.87780 1.22786 1.07786 1.04343 0.91049 1.22168 0.92208 0.95617 0.90905 1.18818 1.05363 0.99586 0.92320 1.21355 0.93411 0.92623 0.98371 1.20495 1.07716 1.04145 0.88902 1.19941 0.92345 0.91494 0.87676 1.83464 1.62334 1.54992 1.13145 1.20763 1.32293 1.13447 0.81547 0.89861 1.25323 0.98557 1.01700 0.93062 1.69700 1.45212 1.42118 0.98612 0.85212 0.78940 0.78090 0.78472 1.18987 1.19256 1.18360 1.21222 1.05750 0.99357 0.99901 1.21288 0.96152 0.98000 0.90946 1.22886 1.00232 1.05408 0.92740 1.23238 0.99535 0.95486 1.03071 1.22917 1.03648 0.97896 0.95382 0.89882 0.91066 0.91620 0.76107 0.91276 0.91769 0.74730 0.82794 0.86004 0.81678 0.84318 0.90381 0.86871 0.84361 0.87139 0.87490 0.88091 0.88108 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 7.33 71.98 0.53 -0.88 16 2 C 0.16 1.67 0.88 -10.79 -0.01 1.66 16 3 O -0.56 -6.21 12.70 -148.98 -1.89 -8.10 16 4 C 0.10 1.44 4.78 86.38 0.41 1.85 16 5 N -0.71 -11.51 5.14 -467.51 -2.41 -13.92 16 6 C 0.55 12.92 7.74 86.33 0.67 13.58 16 7 O -0.60 -18.99 16.23 -4.42 -0.07 -19.06 16 8 C -0.24 -5.14 9.41 23.62 0.22 -4.92 16 9 C 0.01 0.28 9.45 23.82 0.23 0.51 16 10 C -0.16 -4.77 5.87 -20.13 -0.12 -4.88 16 11 C -0.04 -1.12 9.40 22.55 0.21 -0.91 16 12 C -0.19 -6.80 9.97 22.34 0.22 -6.57 16 13 C 0.14 6.06 6.66 22.72 0.15 6.22 16 14 O -0.23 -12.16 8.57 -20.39 -0.17 -12.33 16 15 C -0.40 -23.16 9.94 67.94 0.68 -22.49 16 16 H 0.08 5.01 5.41 -2.91 -0.02 4.99 16 17 C 0.01 0.74 5.49 84.86 0.47 1.20 16 18 N -0.92 -53.55 13.96 21.62 0.30 -53.25 16 19 Si 0.97 43.87 28.62 68.60 1.96 45.84 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 23 C -0.24 -10.35 9.14 22.34 0.20 -10.14 16 24 C -0.05 -1.57 9.78 22.55 0.22 -1.35 16 25 C -0.19 -1.73 5.32 -10.79 -0.06 -1.78 16 26 C -0.18 -1.38 9.66 30.62 0.30 -1.09 16 27 C -0.16 -1.32 9.86 30.62 0.30 -1.02 16 28 H 0.08 0.69 6.74 -2.39 -0.02 0.67 16 29 H 0.07 0.65 6.96 -2.39 -0.02 0.63 16 30 H 0.06 0.64 6.86 -2.39 -0.02 0.62 16 31 H 0.39 2.44 9.05 -74.06 -0.67 1.77 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.41 5.07 7.17 -92.71 -0.66 4.41 16 35 H 0.15 2.37 6.07 -2.91 -0.02 2.35 16 36 H 0.12 3.29 7.52 -2.91 -0.02 3.27 16 37 H 0.17 3.13 6.16 -2.91 -0.02 3.11 16 38 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 39 H 0.29 15.31 8.31 -92.71 -0.77 14.54 16 40 H 0.11 5.30 5.62 -2.91 -0.02 5.29 16 41 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 42 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.11 0.75 5.89 -2.39 -0.01 0.74 16 44 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.10 0.86 7.28 -2.38 -0.02 0.84 16 Total: -1.00 -70.29 383.08 2.04 -68.25 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -0.30 Total: 23.59 kcal Atomic # 6 Polarization: -35.63 SS G_CDS: 4.62 Total: -31.01 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: -2.10 Total: -67.17 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -2.14 Total: -39.49 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.96 Total: 45.84 kcal Total: -70.29 2.04 -68.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492951438.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.811 kcal (2) G-P(sol) polarization free energy of solvation -70.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds