Wall clock time and date at job start Tue Mar 31 2020 17:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 109.89125 * 2 1 4 4 C 1.54374 * 109.83016 * 239.06772 * 2 1 3 5 5 C 1.55303 * 102.25224 * 219.12478 * 4 2 1 6 6 C 1.54941 * 100.94258 * 34.13495 * 5 4 2 7 7 H 1.09007 * 110.30839 * 82.46509 * 6 5 4 8 8 C 1.52995 * 110.31110 * 204.63885 * 6 5 4 9 9 N 1.46499 * 109.47155 * 185.00032 * 8 6 5 10 10 C 1.34778 * 120.00224 * 180.02562 * 9 8 6 11 11 O 1.21719 * 119.99915 * 359.97438 * 10 9 8 12 12 C 1.46256 * 119.99886 * 180.02562 * 10 9 8 13 13 C 1.35027 * 119.99768 * 173.21049 * 12 10 9 14 14 C 1.46964 * 120.00075 * 348.68503 * 13 12 10 15 15 C 1.40027 * 120.09830 * 316.40502 * 14 13 12 16 16 C 1.37593 * 119.89499 * 179.74149 * 15 14 13 17 17 C 1.39173 * 120.10220 * 0.51147 * 16 15 14 18 18 O 1.35580 * 119.89791 * 179.73923 * 17 16 15 19 19 C 1.34785 * 116.99649 * 174.38190 * 18 17 16 20 20 H 1.07995 * 120.00273 * 5.06672 * 19 18 17 21 21 C 1.38716 * 119.99680 * 185.06306 * 19 18 17 22 22 N 1.31506 * 119.99935 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00195 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47022 * 89.99831 * 23 21 19 25 25 H 1.48496 * 109.47711 * 209.99984 * 23 21 19 26 26 H 1.48507 * 109.47165 * 330.00315 * 23 21 19 27 27 C 1.39170 * 120.20338 * 359.76562 * 17 16 15 28 28 C 1.37602 * 120.10417 * 359.97370 * 27 17 16 29 29 O 1.43231 * 109.83077 * 120.93212 * 2 1 3 30 30 H 1.08996 * 109.46628 * 180.93464 * 1 2 3 31 31 H 1.08995 * 109.47140 * 300.92963 * 1 2 3 32 32 H 1.08999 * 109.47246 * 60.93217 * 1 2 3 33 33 H 1.09012 * 110.84921 * 100.94045 * 4 2 1 34 34 H 1.08996 * 110.85475 * 337.31793 * 4 2 1 35 35 H 1.09003 * 111.12609 * 276.21405 * 5 4 2 36 36 H 1.09004 * 111.16094 * 152.06593 * 5 4 2 37 37 H 1.08997 * 109.47071 * 304.99473 * 8 6 5 38 38 H 1.08998 * 109.47664 * 65.00121 * 8 6 5 39 39 H 0.97002 * 120.00117 * 359.97438 * 9 8 6 40 40 H 1.08001 * 120.00399 * 353.20558 * 12 10 9 41 41 H 1.07997 * 119.99886 * 168.67689 * 13 12 10 42 42 H 1.08004 * 120.05148 * 359.97438 * 15 14 13 43 43 H 1.08002 * 119.95010 * 180.23209 * 16 15 14 44 44 H 0.97003 * 119.99893 * 180.02562 * 22 21 19 45 45 H 1.08002 * 119.95278 * 179.97438 * 27 17 16 46 46 H 1.07994 * 120.05385 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 6 2.0537 -0.7465 -1.2457 5 6 3.2731 -1.5220 -0.6767 6 6 2.7749 -1.8443 0.7545 7 1 2.1402 -2.7305 0.7436 8 6 3.9627 -2.0520 1.6961 9 7 3.4751 -2.4719 3.0122 10 6 4.3492 -2.7143 4.0090 11 8 5.5440 -2.5849 3.8156 12 6 3.8623 -3.1340 5.3227 13 6 4.7385 -3.5089 6.2793 14 6 6.1493 -3.7354 5.9355 15 6 6.4843 -4.4429 4.7745 16 6 7.8066 -4.6480 4.4539 17 6 8.8102 -4.1627 5.2871 18 8 10.1117 -4.3718 4.9699 19 6 11.0350 -3.7786 5.7525 20 1 10.7277 -3.2374 6.6350 21 6 12.3801 -3.8634 5.4242 22 7 13.2810 -3.2851 6.1879 23 14 12.9117 -4.7990 3.8973 24 1 12.9417 -3.8743 2.7356 25 1 14.2664 -5.3681 4.1119 26 1 11.9496 -5.8982 3.6302 27 6 8.4819 -3.4640 6.4451 28 6 7.1624 -3.2494 6.7710 29 8 2.0160 -0.6926 1.1557 30 1 -0.3632 -1.0275 0.0168 31 1 -0.3633 0.5282 0.8815 32 1 -0.3634 0.4993 -0.8982 33 1 2.3672 -0.0424 -2.0166 34 1 1.3013 -1.4349 -1.6303 35 1 4.1621 -0.8918 -0.6507 36 1 3.4580 -2.4348 -1.2432 37 1 4.6186 -2.8217 1.2893 38 1 4.5160 -1.1181 1.7947 39 1 2.5229 -2.5747 3.1665 40 1 2.8020 -3.1441 5.5278 41 1 4.4025 -3.6421 7.2970 42 1 5.7060 -4.8238 4.1297 43 1 8.0660 -5.1903 3.5567 44 1 14.2216 -3.3440 5.9581 45 1 9.2640 -3.0896 7.0889 46 1 6.9086 -2.7068 7.6696 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493168619.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:42 Heat of formation + Delta-G solvation = -82.366047 kcal Electronic energy + Delta-G solvation = -27323.737941 eV Core-core repulsion = 23371.875848 eV Total energy + Delta-G solvation = -3951.862093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.21993 -40.76266 -40.22621 -38.29719 -35.88921 -34.64379 -34.08964 -33.25153 -32.68319 -31.85483 -30.06238 -28.72503 -27.29573 -25.34507 -23.87360 -23.54682 -22.64435 -22.25439 -21.62610 -20.46615 -19.69659 -19.13427 -18.15579 -18.04674 -17.01104 -16.79583 -16.57533 -16.20851 -16.00629 -15.68964 -15.52714 -15.34433 -15.06031 -14.70169 -14.49299 -14.31756 -14.26413 -14.18824 -13.94189 -13.87452 -13.70469 -13.15330 -13.07139 -12.85075 -12.68862 -12.65973 -12.49636 -12.28801 -12.14501 -11.95471 -11.75632 -11.70190 -11.33886 -11.03017 -10.70115 -10.51901 -10.44798 -10.04645 -9.58647 -8.61037 -8.52045 -6.23026 -0.03428 0.68395 1.09059 1.28172 1.34727 1.49776 2.26577 2.31448 2.49236 2.75268 2.79703 3.04500 3.22926 3.50693 3.76406 3.86513 3.98177 4.05514 4.10351 4.12424 4.15389 4.20007 4.35898 4.44504 4.51114 4.53508 4.58126 4.66295 4.76967 4.78141 4.89373 4.90126 4.94011 5.03342 5.09294 5.18346 5.21890 5.24703 5.35025 5.40337 5.44871 5.52308 5.67598 5.77852 5.82914 5.90252 6.09815 6.26297 6.70853 6.81966 7.44126 7.57666 8.59562 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015325 B = 0.002366 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.684773 B =11831.064921 C =13136.708921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.065 3.935 3 H 0.074 0.926 4 C -0.143 4.143 5 C -0.151 4.151 6 C 0.076 3.924 7 H 0.094 0.906 8 C 0.124 3.876 9 N -0.713 5.713 10 C 0.525 3.475 11 O -0.569 6.569 12 C -0.227 4.227 13 C 0.001 3.999 14 C -0.151 4.151 15 C 0.012 3.988 16 C -0.209 4.209 17 C 0.132 3.868 18 O -0.244 6.244 19 C -0.401 4.401 20 H 0.081 0.919 21 C 0.010 3.990 22 N -0.921 5.921 23 Si 0.971 3.029 24 H -0.268 1.268 25 H -0.262 1.262 26 H -0.264 1.264 27 C -0.253 4.253 28 C -0.054 4.054 29 O -0.394 6.394 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.414 0.586 40 H 0.172 0.828 41 H 0.168 0.832 42 H 0.127 0.873 43 H 0.118 0.882 44 H 0.285 0.715 45 H 0.109 0.891 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.186 2.195 -12.925 33.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.008 3.992 3 H 0.092 0.908 4 C -0.181 4.181 5 C -0.189 4.189 6 C 0.018 3.982 7 H 0.112 0.888 8 C -0.001 4.001 9 N -0.365 5.365 10 C 0.316 3.684 11 O -0.450 6.450 12 C -0.247 4.247 13 C -0.018 4.018 14 C -0.152 4.152 15 C -0.007 4.007 16 C -0.228 4.228 17 C 0.083 3.917 18 O -0.151 6.151 19 C -0.477 4.477 20 H 0.099 0.901 21 C -0.189 4.189 22 N -0.561 5.561 23 Si 0.793 3.207 24 H -0.193 1.193 25 H -0.186 1.186 26 H -0.189 1.189 27 C -0.272 4.272 28 C -0.072 4.072 29 O -0.315 6.315 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.251 0.749 40 H 0.190 0.810 41 H 0.185 0.815 42 H 0.144 0.856 43 H 0.136 0.864 44 H 0.095 0.905 45 H 0.127 0.873 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -30.074 2.281 -13.021 32.851 hybrid contribution 0.709 0.142 -0.297 0.781 sum -29.366 2.423 -13.318 32.335 Atomic orbital electron populations 1.22107 0.93787 1.02808 1.02764 1.22906 0.95184 0.96232 0.84904 0.90831 1.23184 0.97396 0.99925 0.97574 1.23274 0.98981 1.02351 0.94319 1.23207 0.91472 0.90086 0.93398 0.88807 1.21439 0.96007 0.99710 0.82925 1.45792 1.10681 1.69191 1.10833 1.19089 0.85800 0.77478 0.86052 1.90991 1.17306 1.53308 1.83359 1.23064 1.01757 1.07516 0.92394 1.22575 0.89560 0.89765 0.99908 1.18928 0.94126 1.05046 0.97058 1.20745 0.93554 0.93187 0.93175 1.20245 0.91881 1.09328 1.01340 1.19747 0.83898 0.94084 0.93966 1.83450 1.12676 1.65808 1.53172 1.20751 0.86797 1.32965 1.07175 0.90123 1.25303 0.94086 0.97735 1.01760 1.69705 1.02362 1.44153 1.39894 0.85222 0.77980 0.79264 0.78236 1.19266 1.18646 1.18879 1.21115 0.98007 1.08358 0.99766 1.21155 0.90688 0.96654 0.98677 1.88456 1.70661 1.40704 1.31631 0.91933 0.92707 0.90004 0.88811 0.88933 0.90785 0.87965 0.90668 0.93447 0.74897 0.81036 0.81484 0.85567 0.86352 0.90481 0.87316 0.84031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.44 71.98 0.68 -0.76 16 2 C 0.06 0.79 4.16 31.06 0.13 0.92 16 3 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 4 C -0.14 -1.20 6.54 31.85 0.21 -0.99 16 5 C -0.15 -1.67 6.57 32.05 0.21 -1.46 16 6 C 0.08 1.06 3.47 31.26 0.11 1.17 16 7 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 8 C 0.12 2.49 5.38 86.38 0.46 2.96 16 9 N -0.71 -14.03 5.55 -467.51 -2.59 -16.62 16 10 C 0.53 13.89 6.77 86.33 0.58 14.47 16 11 O -0.57 -21.27 12.17 -4.41 -0.05 -21.33 16 12 C -0.23 -4.49 9.90 23.62 0.23 -4.25 16 13 C 0.00 0.03 9.80 23.82 0.23 0.26 16 14 C -0.15 -5.18 4.54 -20.13 -0.09 -5.27 16 15 C 0.01 0.43 6.59 22.55 0.15 0.58 16 16 C -0.21 -9.34 9.97 22.34 0.22 -9.12 16 17 C 0.13 6.90 6.66 22.72 0.15 7.05 16 18 O -0.24 -14.33 8.57 -20.42 -0.18 -14.50 16 19 C -0.40 -25.01 9.94 67.93 0.68 -24.33 16 20 H 0.08 5.26 5.41 -2.91 -0.02 5.25 16 21 C 0.01 0.58 5.49 84.86 0.47 1.05 16 22 N -0.92 -56.84 13.96 21.62 0.30 -56.54 16 23 Si 0.97 47.61 28.62 68.60 1.96 49.58 16 24 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 25 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.26 -13.01 7.11 99.48 0.71 -12.31 16 27 C -0.25 -12.30 9.14 22.34 0.20 -12.09 16 28 C -0.05 -2.07 9.78 22.55 0.22 -1.85 16 29 O -0.39 -6.75 10.70 -148.98 -1.59 -8.34 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.09 0.54 7.85 -2.39 -0.02 0.53 16 35 H 0.07 0.98 8.06 -2.39 -0.02 0.96 16 36 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.41 5.57 8.45 -92.71 -0.78 4.79 16 40 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 42 H 0.13 4.08 7.02 -2.91 -0.02 4.06 16 43 H 0.12 5.01 8.06 -2.91 -0.02 4.99 16 44 H 0.29 16.09 8.31 -92.71 -0.77 15.32 16 45 H 0.11 5.69 5.62 -2.91 -0.02 5.67 16 46 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -79.87 381.29 2.91 -76.97 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.21 Total: 22.44 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: 4.85 Total: -31.65 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -2.29 Total: -73.16 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -1.82 Total: -44.17 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 1.96 Total: 49.58 kcal Total: -79.87 2.91 -76.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493168619.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.399 kcal (2) G-P(sol) polarization free energy of solvation -79.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds