Wall clock time and date at job start Tue Mar 31 2020 17:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.33081 * 2 1 4 4 C 1.54483 * 110.46339 * 237.69681 * 2 1 3 5 5 C 1.54511 * 104.06036 * 217.14055 * 4 2 1 6 6 C 1.54482 * 104.06124 * 359.97438 * 5 4 2 7 7 H 1.08999 * 110.37013 * 265.14693 * 6 5 4 8 8 C 1.53002 * 110.36933 * 142.81359 * 6 5 4 9 9 N 1.46494 * 109.46797 * 179.97438 * 8 6 5 10 10 C 1.34780 * 120.00077 * 180.02562 * 9 8 6 11 11 O 1.21725 * 119.99655 * 359.97438 * 10 9 8 12 12 C 1.46252 * 120.00614 * 180.02562 * 10 9 8 13 13 C 1.35022 * 120.00328 * 173.21051 * 12 10 9 14 14 C 1.46955 * 120.00116 * 348.68269 * 13 12 10 15 15 C 1.40030 * 120.09601 * 316.40979 * 14 13 12 16 16 C 1.37601 * 119.89227 * 179.72147 * 15 14 13 17 17 C 1.39180 * 120.10334 * 0.52773 * 16 15 14 18 18 O 1.35572 * 119.89915 * 179.74355 * 17 16 15 19 19 C 1.34783 * 116.99502 * 174.38440 * 18 17 16 20 20 H 1.08002 * 120.00621 * 5.05916 * 19 18 17 21 21 C 1.38718 * 119.99540 * 185.06317 * 19 18 17 22 22 N 1.31509 * 119.99951 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00195 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47469 * 89.99248 * 23 21 19 25 25 H 1.48498 * 109.47470 * 209.99896 * 23 21 19 26 26 H 1.48504 * 109.47156 * 329.99772 * 23 21 19 27 27 C 1.39175 * 120.20121 * 359.76921 * 17 16 15 28 28 C 1.37607 * 120.10247 * 359.95166 * 27 17 16 29 29 O 1.44416 * 110.37683 * 122.25662 * 2 1 3 30 30 H 1.08998 * 109.46875 * 299.19539 * 1 2 3 31 31 H 1.08999 * 109.47441 * 59.19339 * 1 2 3 32 32 H 1.09001 * 109.46754 * 179.20100 * 1 2 3 33 33 H 1.08994 * 110.51568 * 98.49144 * 4 2 1 34 34 H 1.09003 * 110.51005 * 335.78037 * 4 2 1 35 35 H 1.08999 * 110.50749 * 241.35602 * 5 4 2 36 36 H 1.08995 * 110.50887 * 118.64467 * 5 4 2 37 37 H 1.09004 * 109.46790 * 299.99586 * 8 6 5 38 38 H 1.08999 * 109.47325 * 59.99590 * 8 6 5 39 39 H 0.97000 * 120.00707 * 0.02562 * 9 8 6 40 40 H 1.08003 * 119.99467 * 353.20436 * 12 10 9 41 41 H 1.08005 * 119.99755 * 168.68363 * 13 12 10 42 42 H 1.08001 * 120.05357 * 359.97124 * 15 14 13 43 43 H 1.07997 * 119.94831 * 180.27258 * 16 15 14 44 44 H 0.97007 * 119.99966 * 179.97438 * 22 21 19 45 45 H 1.07994 * 119.95046 * 179.97438 * 27 17 16 46 46 H 1.08002 * 120.05144 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0701 -0.7735 -1.2233 5 6 3.3207 -1.5031 -0.6839 6 6 3.3886 -1.0835 0.8013 7 1 4.0525 -0.2278 0.9238 8 6 3.8625 -2.2547 1.6644 9 7 3.9202 -1.8356 3.0669 10 6 4.3144 -2.7082 4.0153 11 8 4.6220 -3.8448 3.7066 12 6 4.3715 -2.2901 5.4157 13 6 4.6327 -3.1972 6.3810 14 6 4.6136 -4.6324 6.0654 15 6 3.5891 -5.1633 5.2720 16 6 3.5785 -6.5066 4.9743 17 6 4.5777 -7.3393 5.4695 18 8 4.5603 -8.6632 5.1779 19 6 5.6157 -9.3941 5.5886 20 1 6.3853 -8.9385 6.1941 21 6 5.7134 -10.7314 5.2334 22 7 4.7760 -11.2863 4.4965 23 14 7.1756 -11.7447 5.8031 24 1 6.8634 -12.3718 7.1125 25 1 7.4636 -12.8040 4.8030 26 1 8.3624 -10.8638 5.9468 27 6 5.5945 -6.8172 6.2636 28 6 5.6165 -5.4740 6.5618 29 8 2.0329 -0.7225 1.1449 30 1 -0.3633 0.5013 0.8971 31 1 -0.3634 0.5263 -0.8826 32 1 -0.3633 -1.0276 -0.0143 33 1 2.3449 -0.0832 -2.0208 34 1 1.3313 -1.4926 -1.5771 35 1 4.2138 -1.1733 -1.2148 36 1 3.2002 -2.5828 -0.7711 37 1 3.1658 -3.0868 1.5618 38 1 4.8540 -2.5686 1.3382 39 1 3.6747 -0.9300 3.3131 40 1 4.2048 -1.2557 5.6775 41 1 4.8558 -2.8681 7.3852 42 1 2.8108 -4.5186 4.8910 43 1 2.7912 -6.9162 4.3589 44 1 4.8445 -12.2214 4.2479 45 1 6.3676 -7.4670 6.6460 46 1 6.4061 -5.0696 7.1777 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493168621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:51 Heat of formation + Delta-G solvation = -61.194203 kcal Electronic energy + Delta-G solvation = -27341.602319 eV Core-core repulsion = 23390.658305 eV Total energy + Delta-G solvation = -3950.944013 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.15181 -39.45455 -38.59837 -36.49596 -34.75205 -32.98914 -32.60053 -32.16020 -31.89036 -30.06611 -28.69362 -27.51866 -25.41454 -24.37969 -22.67318 -21.81336 -21.68556 -21.30756 -20.79147 -19.13346 -17.88658 -17.16612 -17.02154 -16.54298 -16.29773 -15.96022 -15.02340 -14.71799 -14.54186 -14.44017 -14.15134 -14.08263 -13.73055 -13.46030 -13.31322 -13.12038 -13.00432 -12.79137 -12.55587 -12.31170 -12.24039 -12.12360 -11.98405 -11.66564 -11.52659 -11.29748 -11.21285 -11.00465 -10.96641 -10.63616 -10.57732 -10.37888 -10.09231 -9.44451 -9.36399 -9.10878 -8.89631 -8.65392 -7.86682 -6.81230 -6.42218 -3.97912 1.30854 2.47431 2.75625 3.15835 3.17340 3.21589 3.26670 3.52306 3.72057 4.00177 4.19478 4.31429 4.52573 4.63565 4.74510 4.81082 4.91880 5.01784 5.11065 5.13923 5.19679 5.24865 5.29268 5.40583 5.42527 5.44544 5.59346 5.65478 5.68947 5.69895 5.78027 5.78876 5.85893 5.90666 6.30087 6.38966 6.48529 6.52177 6.61693 6.65615 6.84513 7.08793 7.16742 7.41551 7.50547 7.54962 7.75368 7.97407 8.04717 8.61740 9.03535 9.76187 10.75773 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.002310 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.340665 B =12118.020613 C =13181.019827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 H 0.067 0.933 4 C -0.151 4.151 5 C -0.149 4.149 6 C 0.064 3.936 7 H 0.074 0.926 8 C 0.129 3.871 9 N -0.732 5.732 10 C 0.538 3.462 11 O -0.513 6.513 12 C -0.265 4.265 13 C 0.026 3.974 14 C -0.188 4.188 15 C 0.013 3.987 16 C -0.202 4.202 17 C 0.171 3.829 18 O -0.174 6.174 19 C -0.389 4.389 20 H 0.094 0.906 21 C 0.038 3.962 22 N -0.861 5.861 23 Si 0.942 3.058 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.251 4.251 28 C -0.042 4.042 29 O -0.364 6.364 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.398 0.602 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.270 0.730 45 H 0.126 0.874 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.793 24.646 -7.052 25.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.189 4.189 5 C -0.187 4.187 6 C 0.006 3.994 7 H 0.092 0.908 8 C 0.005 3.995 9 N -0.385 5.385 10 C 0.328 3.672 11 O -0.390 6.390 12 C -0.286 4.286 13 C 0.006 3.994 14 C -0.189 4.189 15 C -0.006 4.006 16 C -0.222 4.222 17 C 0.116 3.884 18 O -0.076 6.076 19 C -0.465 4.465 20 H 0.111 0.889 21 C -0.166 4.166 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.270 4.270 28 C -0.061 4.061 29 O -0.283 6.283 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.232 0.768 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.119 0.881 43 H 0.131 0.869 44 H 0.080 0.920 45 H 0.143 0.857 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.895 23.353 -7.327 24.783 hybrid contribution 0.802 0.184 0.081 0.827 sum -3.093 23.537 -7.246 24.820 Atomic orbital electron populations 1.21803 0.93117 1.03117 1.02397 1.22978 0.95452 0.95283 0.85151 0.91498 1.23006 0.97745 0.99834 0.98272 1.22919 0.98700 1.02301 0.94815 1.23240 0.85090 0.96971 0.94063 0.90826 1.21338 1.01643 0.95790 0.80696 1.45868 1.70094 1.15754 1.06821 1.18500 0.77365 0.84968 0.86377 1.90998 1.47257 1.18200 1.82526 1.22593 1.13979 0.99811 0.92208 1.22324 0.87441 0.92459 0.97174 1.18295 1.00462 0.91736 1.08428 1.20456 0.95625 0.93090 0.91382 1.20006 1.01631 0.92869 1.07680 1.19525 0.92752 0.84782 0.91296 1.83908 1.41900 1.13770 1.68028 1.21391 1.00284 0.92090 1.32772 0.88912 1.25322 0.98737 0.96237 0.96321 1.70028 1.32562 1.13150 1.33802 0.85699 0.79956 0.79245 0.78465 1.19861 1.20257 1.19153 1.20947 1.02950 0.95704 1.07427 1.20741 0.96096 0.92704 0.96518 1.89211 1.26455 1.74543 1.38107 0.91799 0.91232 0.91634 0.90555 0.90329 0.90173 0.89881 0.90701 0.90291 0.76848 0.86183 0.86099 0.88067 0.86872 0.92002 0.85679 0.87629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.53 37.16 0.35 -0.61 16 2 C 0.07 0.51 3.92 -25.95 -0.10 0.41 16 3 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.15 -0.97 6.63 -25.16 -0.17 -1.14 16 5 C -0.15 -1.09 6.63 -25.16 -0.17 -1.25 16 6 C 0.06 0.56 3.33 -25.95 -0.09 0.47 16 7 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 8 C 0.13 1.48 5.29 -4.04 -0.02 1.46 16 9 N -0.73 -8.80 5.51 -61.75 -0.34 -9.15 16 10 C 0.54 8.34 6.77 -13.04 -0.09 8.26 16 11 O -0.51 -10.35 12.17 5.17 0.06 -10.29 16 12 C -0.26 -3.52 9.90 -37.51 -0.37 -3.89 16 13 C 0.03 0.37 9.80 -37.20 -0.36 0.01 16 14 C -0.19 -3.60 4.54 -105.03 -0.48 -4.07 16 15 C 0.01 0.27 6.59 -39.14 -0.26 0.01 16 16 C -0.20 -4.79 9.97 -39.46 -0.39 -5.18 16 17 C 0.17 4.45 6.66 -38.88 -0.26 4.19 16 18 O -0.17 -5.19 9.74 0.73 0.01 -5.18 16 19 C -0.39 -11.26 9.48 30.91 0.29 -10.96 16 20 H 0.09 2.49 5.18 -52.49 -0.27 2.22 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 22 N -0.86 -25.84 13.67 55.48 0.76 -25.09 16 23 Si 0.94 21.01 29.55 -169.99 -5.02 15.99 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 26 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 27 C -0.25 -5.86 9.14 -39.46 -0.36 -6.22 16 28 C -0.04 -0.84 9.78 -39.15 -0.38 -1.23 16 29 O -0.36 -3.66 11.00 -35.23 -0.39 -4.05 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.66 7.87 -51.93 -0.41 0.25 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.40 3.78 8.45 -40.82 -0.34 3.44 16 40 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 41 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 42 H 0.10 1.95 7.02 -52.49 -0.37 1.58 16 43 H 0.11 2.62 8.06 -52.49 -0.42 2.19 16 44 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.13 2.88 5.62 -52.49 -0.29 2.59 16 46 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 382.26 15.07 5.76 5.76 Total: -1.00 -34.78 382.26 -8.84 -43.61 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -6.73 Total: 7.15 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -2.95 Total: -18.76 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.42 Total: -34.23 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.32 Total: -19.52 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.78 -8.84 -43.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493168621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.581 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds