Wall clock time and date at job start Tue Mar 31 2020 17:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.33081 * 2 1 4 4 C 1.54483 * 110.46339 * 237.69681 * 2 1 3 5 5 C 1.54511 * 104.06036 * 217.14055 * 4 2 1 6 6 C 1.54482 * 104.06124 * 359.97438 * 5 4 2 7 7 H 1.08999 * 110.37013 * 265.14693 * 6 5 4 8 8 C 1.53002 * 110.36933 * 142.81359 * 6 5 4 9 9 N 1.46494 * 109.46797 * 179.97438 * 8 6 5 10 10 C 1.34780 * 120.00077 * 180.02562 * 9 8 6 11 11 O 1.21725 * 119.99655 * 359.97438 * 10 9 8 12 12 C 1.46252 * 120.00614 * 180.02562 * 10 9 8 13 13 C 1.35022 * 120.00328 * 173.21051 * 12 10 9 14 14 C 1.46955 * 120.00116 * 348.68269 * 13 12 10 15 15 C 1.40030 * 120.09601 * 316.40979 * 14 13 12 16 16 C 1.37601 * 119.89227 * 179.72147 * 15 14 13 17 17 C 1.39180 * 120.10334 * 0.52773 * 16 15 14 18 18 O 1.35572 * 119.89915 * 179.74355 * 17 16 15 19 19 C 1.34783 * 116.99502 * 174.38440 * 18 17 16 20 20 H 1.08002 * 120.00621 * 5.05916 * 19 18 17 21 21 C 1.38718 * 119.99540 * 185.06317 * 19 18 17 22 22 N 1.31509 * 119.99951 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00195 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47469 * 89.99248 * 23 21 19 25 25 H 1.48498 * 109.47470 * 209.99896 * 23 21 19 26 26 H 1.48504 * 109.47156 * 329.99772 * 23 21 19 27 27 C 1.39175 * 120.20121 * 359.76921 * 17 16 15 28 28 C 1.37607 * 120.10247 * 359.95166 * 27 17 16 29 29 O 1.44416 * 110.37683 * 122.25662 * 2 1 3 30 30 H 1.08998 * 109.46875 * 299.19539 * 1 2 3 31 31 H 1.08999 * 109.47441 * 59.19339 * 1 2 3 32 32 H 1.09001 * 109.46754 * 179.20100 * 1 2 3 33 33 H 1.08994 * 110.51568 * 98.49144 * 4 2 1 34 34 H 1.09003 * 110.51005 * 335.78037 * 4 2 1 35 35 H 1.08999 * 110.50749 * 241.35602 * 5 4 2 36 36 H 1.08995 * 110.50887 * 118.64467 * 5 4 2 37 37 H 1.09004 * 109.46790 * 299.99586 * 8 6 5 38 38 H 1.08999 * 109.47325 * 59.99590 * 8 6 5 39 39 H 0.97000 * 120.00707 * 0.02562 * 9 8 6 40 40 H 1.08003 * 119.99467 * 353.20436 * 12 10 9 41 41 H 1.08005 * 119.99755 * 168.68363 * 13 12 10 42 42 H 1.08001 * 120.05357 * 359.97124 * 15 14 13 43 43 H 1.07997 * 119.94831 * 180.27258 * 16 15 14 44 44 H 0.97007 * 119.99966 * 179.97438 * 22 21 19 45 45 H 1.07994 * 119.95046 * 179.97438 * 27 17 16 46 46 H 1.08002 * 120.05144 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0701 -0.7735 -1.2233 5 6 3.3207 -1.5031 -0.6839 6 6 3.3886 -1.0835 0.8013 7 1 4.0525 -0.2278 0.9238 8 6 3.8625 -2.2547 1.6644 9 7 3.9202 -1.8356 3.0669 10 6 4.3144 -2.7082 4.0153 11 8 4.6220 -3.8448 3.7066 12 6 4.3715 -2.2901 5.4157 13 6 4.6327 -3.1972 6.3810 14 6 4.6136 -4.6324 6.0654 15 6 3.5891 -5.1633 5.2720 16 6 3.5785 -6.5066 4.9743 17 6 4.5777 -7.3393 5.4695 18 8 4.5603 -8.6632 5.1779 19 6 5.6157 -9.3941 5.5886 20 1 6.3853 -8.9385 6.1941 21 6 5.7134 -10.7314 5.2334 22 7 4.7760 -11.2863 4.4965 23 14 7.1756 -11.7447 5.8031 24 1 6.8634 -12.3718 7.1125 25 1 7.4636 -12.8040 4.8030 26 1 8.3624 -10.8638 5.9468 27 6 5.5945 -6.8172 6.2636 28 6 5.6165 -5.4740 6.5618 29 8 2.0329 -0.7225 1.1449 30 1 -0.3633 0.5013 0.8971 31 1 -0.3634 0.5263 -0.8826 32 1 -0.3633 -1.0276 -0.0143 33 1 2.3449 -0.0832 -2.0208 34 1 1.3313 -1.4926 -1.5771 35 1 4.2138 -1.1733 -1.2148 36 1 3.2002 -2.5828 -0.7711 37 1 3.1658 -3.0868 1.5618 38 1 4.8540 -2.5686 1.3382 39 1 3.6747 -0.9300 3.3131 40 1 4.2048 -1.2557 5.6775 41 1 4.8558 -2.8681 7.3852 42 1 2.8108 -4.5186 4.8910 43 1 2.7912 -6.9162 4.3589 44 1 4.8445 -12.2214 4.2479 45 1 6.3676 -7.4670 6.6460 46 1 6.4061 -5.0696 7.1777 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493168621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:50 Heat of formation + Delta-G solvation = -85.223057 kcal Electronic energy + Delta-G solvation = -27342.644288 eV Core-core repulsion = 23390.658305 eV Total energy + Delta-G solvation = -3951.985983 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.18532 -40.68205 -40.15700 -38.20649 -35.88432 -34.58898 -33.92897 -33.22275 -32.70872 -31.82325 -29.95713 -28.68817 -27.39964 -25.31020 -23.92466 -23.43665 -22.56053 -22.30779 -21.86995 -20.44865 -19.75707 -18.87675 -18.07838 -17.67719 -17.05718 -16.89172 -16.39109 -16.32869 -16.02120 -15.87722 -15.52488 -15.29907 -15.04924 -14.72444 -14.54816 -14.49430 -14.25956 -13.95833 -13.73462 -13.61545 -13.56073 -13.10981 -13.02123 -12.89806 -12.67989 -12.57762 -12.35598 -12.23559 -12.16622 -12.11681 -11.76133 -11.56268 -11.24234 -10.96086 -10.74201 -10.67216 -10.39299 -10.04820 -9.57154 -8.55684 -8.48415 -6.15875 -0.00538 0.71186 1.12696 1.33331 1.45498 1.52202 2.17183 2.32325 2.48535 2.80068 2.86983 3.20502 3.52102 3.56342 3.71023 3.95355 4.00253 4.03713 4.07463 4.13740 4.16331 4.18393 4.33716 4.44562 4.53401 4.54904 4.56301 4.60853 4.76542 4.77667 4.86914 4.94461 5.03884 5.05418 5.09598 5.10299 5.17991 5.25628 5.26912 5.28070 5.46067 5.51113 5.67779 5.72192 5.85158 5.93397 6.02290 6.24813 6.70892 6.95229 7.44521 7.77513 8.74827 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.002310 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.340665 B =12118.020613 C =13181.019827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.063 3.937 3 H 0.085 0.915 4 C -0.148 4.148 5 C -0.151 4.151 6 C 0.072 3.928 7 H 0.097 0.903 8 C 0.128 3.872 9 N -0.713 5.713 10 C 0.524 3.476 11 O -0.570 6.570 12 C -0.231 4.231 13 C 0.005 3.995 14 C -0.160 4.160 15 C 0.014 3.986 16 C -0.222 4.222 17 C 0.127 3.873 18 O -0.231 6.231 19 C -0.415 4.415 20 H 0.103 0.897 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.023 2.977 24 H -0.260 1.260 25 H -0.270 1.270 26 H -0.253 1.253 27 C -0.258 4.258 28 C -0.047 4.047 29 O -0.389 6.389 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.415 0.585 40 H 0.173 0.827 41 H 0.171 0.829 42 H 0.115 0.885 43 H 0.099 0.901 44 H 0.273 0.727 45 H 0.121 0.879 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.413 29.540 -6.035 30.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.006 3.994 3 H 0.103 0.897 4 C -0.185 4.185 5 C -0.190 4.190 6 C 0.014 3.986 7 H 0.114 0.886 8 C 0.004 3.996 9 N -0.366 5.366 10 C 0.315 3.685 11 O -0.450 6.450 12 C -0.251 4.251 13 C -0.014 4.014 14 C -0.161 4.161 15 C -0.004 4.004 16 C -0.241 4.241 17 C 0.076 3.924 18 O -0.138 6.138 19 C -0.491 4.491 20 H 0.120 0.880 21 C -0.223 4.223 22 N -0.560 5.560 23 Si 0.842 3.158 24 H -0.184 1.184 25 H -0.195 1.195 26 H -0.176 1.176 27 C -0.278 4.278 28 C -0.065 4.065 29 O -0.309 6.309 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.251 0.749 40 H 0.191 0.809 41 H 0.188 0.812 42 H 0.133 0.867 43 H 0.117 0.883 44 H 0.082 0.918 45 H 0.139 0.861 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.545 28.370 -6.306 29.173 hybrid contribution 0.231 -0.780 -0.319 0.873 sum -2.314 27.590 -6.625 28.468 Atomic orbital electron populations 1.21828 0.92866 1.02437 1.03268 1.23196 0.95768 0.95901 0.84526 0.89741 1.23015 0.97013 0.99961 0.98548 1.22956 1.00127 1.01572 0.94307 1.23214 0.85100 0.96336 0.93936 0.88552 1.21343 1.00796 0.96480 0.81017 1.45764 1.68094 1.16045 1.06649 1.19154 0.76799 0.84550 0.88035 1.91003 1.49899 1.20630 1.83512 1.23054 1.09749 1.02165 0.90160 1.22585 0.89425 0.89336 1.00055 1.18875 0.98017 0.94680 1.04509 1.20648 0.96715 0.91671 0.91410 1.20163 1.01317 0.94330 1.08315 1.19991 0.94768 0.84273 0.93326 1.83878 1.43326 1.15638 1.70917 1.21900 1.00812 0.92894 1.33516 0.87955 1.26702 1.02188 0.97164 0.96208 1.70185 1.35483 1.13760 1.36555 0.84536 0.75739 0.77226 0.78345 1.18433 1.19484 1.17650 1.21099 1.02069 0.97512 1.07079 1.21193 0.97321 0.91229 0.96714 1.89178 1.27033 1.75142 1.39572 0.92094 0.89177 0.93120 0.88354 0.90939 0.88282 0.91482 0.93597 0.90770 0.74855 0.80934 0.81175 0.86721 0.88300 0.91762 0.86089 0.83237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.53 71.98 0.69 -1.00 16 2 C 0.06 0.79 3.92 31.10 0.12 0.91 16 3 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.15 -1.60 6.63 31.61 0.21 -1.39 16 5 C -0.15 -1.99 6.63 31.61 0.21 -1.78 16 6 C 0.07 1.11 3.33 31.10 0.10 1.21 16 7 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 8 C 0.13 2.84 5.29 86.38 0.46 3.30 16 9 N -0.71 -15.31 5.51 -467.50 -2.58 -17.89 16 10 C 0.52 14.86 6.77 86.32 0.58 15.44 16 11 O -0.57 -22.70 12.17 -4.43 -0.05 -22.76 16 12 C -0.23 -4.86 9.90 23.61 0.23 -4.63 16 13 C 0.01 0.13 9.80 23.82 0.23 0.36 16 14 C -0.16 -5.75 4.54 -20.13 -0.09 -5.85 16 15 C 0.01 0.58 6.59 22.55 0.15 0.73 16 16 C -0.22 -11.22 9.97 22.35 0.22 -11.00 16 17 C 0.13 7.09 6.66 22.72 0.15 7.24 16 18 O -0.23 -15.08 9.74 -20.30 -0.20 -15.27 16 19 C -0.42 -25.66 9.48 67.93 0.64 -25.02 16 20 H 0.10 5.80 5.18 -2.91 -0.02 5.79 16 21 C -0.03 -1.51 5.49 84.86 0.47 -1.05 16 22 N -0.92 -59.16 13.67 21.62 0.30 -58.86 16 23 Si 1.02 44.68 29.55 68.60 2.03 46.71 16 24 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 26 H -0.25 -10.28 7.11 99.48 0.71 -9.58 16 27 C -0.26 -12.42 9.14 22.35 0.20 -12.21 16 28 C -0.05 -1.78 9.78 22.55 0.22 -1.56 16 29 O -0.39 -7.13 11.00 -148.98 -1.64 -8.76 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.72 8.13 -2.39 -0.02 0.70 16 33 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.87 7.87 -2.39 -0.02 0.86 16 35 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.09 7.87 -2.39 -0.02 1.07 16 37 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.41 6.21 8.45 -92.71 -0.78 5.42 16 40 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 41 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 42 H 0.11 4.38 7.02 -2.91 -0.02 4.36 16 43 H 0.10 5.07 8.06 -2.91 -0.02 5.05 16 44 H 0.27 15.97 8.31 -92.70 -0.77 15.20 16 45 H 0.12 5.78 5.62 -2.91 -0.02 5.76 16 46 H 0.15 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -85.41 382.26 2.87 -82.54 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: 0.21 Total: 30.60 kcal Atomic # 6 Polarization: -41.10 SS G_CDS: 4.81 Total: -36.29 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -2.28 Total: -76.75 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -1.89 Total: -46.80 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -85.41 2.87 -82.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493168621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.684 kcal (2) G-P(sol) polarization free energy of solvation -85.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds