Wall clock time and date at job start Tue Mar 31 2020 17:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.49815 * 2 1 4 4 C 1.53037 * 109.49631 * 239.90136 * 2 1 3 5 5 C 1.53037 * 109.54005 * 178.68630 * 4 2 1 6 6 H 1.09008 * 109.49567 * 301.38509 * 5 4 2 7 7 O 1.42900 * 109.50106 * 181.31982 * 5 4 2 8 8 C 1.52761 * 109.38647 * 61.23673 * 5 4 2 9 9 N 1.46927 * 109.00723 * 305.59374 * 8 5 4 10 10 C 1.34775 * 120.63087 * 233.57759 * 9 8 5 11 11 O 1.21721 * 119.99758 * 184.82748 * 10 9 8 12 12 C 1.46258 * 119.99824 * 4.83155 * 10 9 8 13 13 C 1.35018 * 119.99785 * 187.08679 * 12 10 9 14 14 C 1.46964 * 120.00275 * 10.70079 * 13 12 10 15 15 C 1.40023 * 120.10101 * 226.50040 * 14 13 12 16 16 C 1.37605 * 119.89602 * 179.97438 * 15 14 13 17 17 C 1.39177 * 120.10086 * 359.97438 * 16 15 14 18 18 O 1.35570 * 119.89928 * 180.02562 * 17 16 15 19 19 C 1.34786 * 116.99781 * 5.74594 * 18 17 16 20 20 H 1.08001 * 119.99698 * 354.61645 * 19 18 17 21 21 C 1.38720 * 119.99971 * 174.89879 * 19 18 17 22 22 N 1.31510 * 119.99827 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99814 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47045 * 59.99802 * 23 21 19 25 25 H 1.48506 * 109.46861 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47130 * 299.99748 * 23 21 19 27 27 C 1.39178 * 120.20431 * 0.27422 * 17 16 15 28 28 C 1.37601 * 120.09830 * 359.45001 * 27 17 16 29 29 C 1.46927 * 118.73769 * 53.30704 * 9 8 5 30 30 H 1.09000 * 109.47360 * 299.93640 * 1 2 3 31 31 H 1.09000 * 109.47152 * 59.93477 * 1 2 3 32 32 H 1.08998 * 109.47262 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46551 * 298.70298 * 4 2 1 34 34 H 1.09002 * 109.46148 * 58.66593 * 4 2 1 35 35 H 0.96705 * 113.99818 * 180.02562 * 7 5 4 36 36 H 1.08991 * 109.51701 * 185.71215 * 8 5 4 37 37 H 1.09002 * 109.42641 * 65.42532 * 8 5 4 38 38 H 1.07998 * 119.99857 * 7.08305 * 12 10 9 39 39 H 1.07996 * 119.99926 * 190.70184 * 13 12 10 40 40 H 1.07990 * 120.05089 * 359.97438 * 15 14 13 41 41 H 1.08000 * 119.94864 * 180.02562 * 16 15 14 42 42 H 0.97001 * 119.99633 * 179.97438 * 22 21 19 43 43 H 1.07997 * 119.94792 * 179.72542 * 27 17 16 44 44 H 1.07997 * 120.04805 * 180.27786 * 28 27 17 45 45 H 1.09006 * 109.59032 * 66.43101 * 29 9 8 46 46 H 1.09000 * 109.58521 * 186.71057 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7235 -1.2481 5 6 3.5708 -0.6955 -1.2658 6 1 3.9159 0.3384 -1.2547 7 8 4.0461 -1.3443 -2.4470 8 6 4.1055 -1.4217 -0.0328 9 7 3.5046 -0.8288 1.1698 10 6 4.2811 -0.3850 2.1780 11 8 3.7708 0.0229 3.2050 12 6 5.7370 -0.3936 2.0380 13 6 6.5186 -0.0857 3.0950 14 6 5.9293 0.0273 4.4366 15 6 6.2480 1.1186 5.2540 16 6 5.6934 1.2205 6.5092 17 6 4.8165 0.2411 6.9664 18 8 4.2721 0.3458 8.2035 19 6 4.5263 1.4775 8.8902 20 1 5.2089 2.2114 8.4878 21 6 3.9157 1.6968 10.1163 22 7 3.0884 0.8008 10.6085 23 14 4.2686 3.2649 11.0682 24 1 3.8684 4.4396 10.2527 25 1 3.4973 3.2578 12.3372 26 1 5.7201 3.3440 11.3711 27 6 4.5008 -0.8480 6.1595 28 6 5.0462 -0.9553 4.9007 29 6 2.0413 -0.7235 1.2498 30 1 -0.3634 0.5128 0.8905 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6967 -1.7577 -1.2348 34 1 1.6582 -0.2251 -2.1388 35 1 5.0099 -1.3641 -2.5241 36 1 5.1894 -1.3161 0.0105 37 1 3.8411 -2.4775 -0.0908 38 1 6.1867 -0.6463 1.0892 39 1 7.5768 0.0776 2.9546 40 1 6.9280 1.8791 4.8998 41 1 5.9383 2.0620 7.1402 42 1 2.6617 0.9541 11.4660 43 1 3.8234 -1.6078 6.5201 44 1 4.7972 -1.7985 4.2735 45 1 1.6051 -1.7213 1.2985 46 1 1.7637 -0.1595 2.1403 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493370477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:56 Heat of formation + Delta-G solvation = -59.088202 kcal Electronic energy + Delta-G solvation = -28045.529889 eV Core-core repulsion = 24094.677199 eV Total energy + Delta-G solvation = -3950.852690 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.43299 -39.02590 -38.23357 -36.61038 -36.00208 -34.00538 -33.05727 -32.11458 -30.53023 -30.11927 -28.38306 -27.04970 -25.90031 -25.29474 -22.86738 -22.34777 -21.78752 -20.94867 -20.07131 -18.47966 -17.90136 -17.58226 -17.40445 -16.82909 -15.99843 -15.53373 -15.10507 -14.80767 -14.60581 -14.53186 -14.26365 -13.94659 -13.58619 -13.49523 -13.38884 -13.34560 -13.03211 -12.79276 -12.47847 -12.29444 -12.25187 -12.12617 -12.01817 -11.69343 -11.37609 -11.14718 -11.06456 -10.97987 -10.87414 -10.65296 -10.61822 -10.54419 -10.41154 -9.49154 -9.40371 -9.17074 -8.71472 -8.63508 -7.94577 -6.88416 -6.45297 -4.01291 1.22904 2.41058 2.65881 2.93374 3.13622 3.16181 3.17778 3.54008 3.76431 3.97496 4.35715 4.47362 4.58177 4.66128 4.68604 4.84063 4.87094 4.94532 5.11105 5.22520 5.29644 5.33020 5.33392 5.35984 5.49449 5.52720 5.56114 5.64997 5.70945 5.73480 5.84007 5.86271 5.93760 6.05909 6.22021 6.27242 6.37818 6.49395 6.59970 6.78273 7.02781 7.11703 7.20689 7.34747 7.42345 7.49490 7.50199 7.91612 8.01155 8.45405 9.00222 9.72060 10.72522 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018961 B = 0.002532 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.384083 B =11053.716460 C =11909.882548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 H 0.076 0.924 4 C -0.107 4.107 5 C 0.090 3.910 6 H 0.060 0.940 7 O -0.564 6.564 8 C 0.079 3.921 9 N -0.615 5.615 10 C 0.543 3.457 11 O -0.506 6.506 12 C -0.270 4.270 13 C 0.030 3.970 14 C -0.188 4.188 15 C -0.042 4.042 16 C -0.248 4.248 17 C 0.171 3.829 18 O -0.173 6.173 19 C -0.391 4.391 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.269 1.269 27 C -0.200 4.200 28 C 0.006 3.994 29 C 0.115 3.885 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.379 0.621 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.106 0.894 41 H 0.126 0.874 42 H 0.271 0.729 43 H 0.114 0.886 44 H 0.100 0.900 45 H 0.065 0.935 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.543 -3.008 -23.807 24.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 H 0.094 0.906 4 C -0.144 4.144 5 C 0.030 3.970 6 H 0.078 0.922 7 O -0.369 6.369 8 C -0.045 4.045 9 N -0.352 5.352 10 C 0.335 3.665 11 O -0.381 6.381 12 C -0.291 4.291 13 C 0.011 3.989 14 C -0.188 4.188 15 C -0.060 4.060 16 C -0.268 4.268 17 C 0.116 3.884 18 O -0.075 6.075 19 C -0.467 4.467 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 C -0.220 4.220 28 C -0.012 4.012 29 C -0.008 4.008 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.226 0.774 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.124 0.876 41 H 0.144 0.856 42 H 0.081 0.919 43 H 0.132 0.868 44 H 0.118 0.882 45 H 0.083 0.917 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.317 -3.044 -22.965 23.203 hybrid contribution 0.820 0.863 0.287 1.225 sum 2.137 -2.181 -22.678 22.883 Atomic orbital electron populations 1.21738 0.93799 1.02283 1.02349 1.21473 0.96443 1.00151 0.94251 0.90589 1.21543 0.92813 1.01847 0.98223 1.22100 0.95574 0.95399 0.83951 0.92219 1.86540 1.26929 1.81220 1.42169 1.22353 0.99192 0.98002 0.84978 1.47962 1.06485 1.62518 1.18215 1.18498 0.87908 0.77543 0.82558 1.91002 1.75068 1.45575 1.26504 1.22689 0.92634 1.13940 0.99797 1.22371 0.98014 0.86832 0.91714 1.18284 1.06548 0.99748 0.94266 1.20716 0.96944 0.95597 0.92769 1.20954 1.04985 1.02810 0.98022 1.19518 0.90600 0.92919 0.85378 1.83908 1.63146 1.38828 1.21610 1.21344 1.27724 0.96100 1.01502 0.88955 1.25322 0.95603 0.99177 0.96428 1.70015 1.26630 1.34001 1.18813 0.85770 0.78777 0.80162 0.78677 1.19445 1.20248 1.19449 1.20006 1.06922 1.00083 0.94960 1.20421 0.91542 0.96211 0.93053 1.21644 0.79518 1.00769 0.98861 0.91891 0.92272 0.92315 0.91009 0.91031 0.77369 0.89205 0.90918 0.86048 0.86021 0.87635 0.85648 0.91899 0.86822 0.88166 0.91697 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.20 37.16 0.34 -0.76 16 2 C -0.10 -0.93 2.87 -90.50 -0.26 -1.19 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 4 C -0.11 -0.88 4.82 -26.69 -0.13 -1.00 16 5 C 0.09 0.70 3.61 -26.83 -0.10 0.61 16 6 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 7 O -0.56 -4.17 13.32 -35.23 -0.47 -4.64 16 8 C 0.08 0.65 5.94 -3.93 -0.02 0.63 16 9 N -0.62 -7.21 2.98 -174.73 -0.52 -7.73 16 10 C 0.54 8.10 6.75 -13.04 -0.09 8.01 16 11 O -0.51 -9.88 11.76 5.17 0.06 -9.82 16 12 C -0.27 -3.36 9.22 -37.51 -0.35 -3.70 16 13 C 0.03 0.42 9.79 -37.19 -0.36 0.05 16 14 C -0.19 -3.45 4.43 -105.02 -0.47 -3.91 16 15 C -0.04 -0.81 9.79 -39.14 -0.38 -1.20 16 16 C -0.25 -5.67 9.14 -39.46 -0.36 -6.03 16 17 C 0.17 4.35 6.66 -38.88 -0.26 4.09 16 18 O -0.17 -5.09 9.74 0.73 0.01 -5.08 16 19 C -0.39 -11.16 9.48 30.91 0.29 -10.87 16 20 H 0.09 2.44 5.18 -52.49 -0.27 2.17 16 21 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 22 N -0.86 -25.59 13.67 55.48 0.76 -24.83 16 23 Si 0.94 20.78 29.55 -169.99 -5.02 15.75 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 27 C -0.20 -4.61 9.97 -39.46 -0.39 -5.01 16 28 C 0.01 0.13 6.68 -39.14 -0.26 -0.14 16 29 C 0.11 1.29 5.71 -3.71 -0.02 1.26 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.38 1.20 9.08 45.56 0.41 1.61 16 36 H 0.09 0.60 5.32 -51.93 -0.28 0.32 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.12 1.05 5.91 -52.49 -0.31 0.74 16 39 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 41 H 0.13 2.83 5.62 -52.49 -0.29 2.54 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 43 H 0.11 2.55 8.06 -52.49 -0.42 2.13 16 44 H 0.10 1.83 7.27 -52.49 -0.38 1.45 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.10 1.34 7.03 -51.93 -0.37 0.98 16 LS Contribution 373.06 15.07 5.62 5.62 Total: -1.00 -34.65 373.06 -8.17 -42.82 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.69 Total: 6.05 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -2.91 Total: -18.14 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.24 Total: -32.55 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.40 Total: -19.55 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.65 -8.17 -42.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493370477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.269 kcal (2) G-P(sol) polarization free energy of solvation -34.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds