Wall clock time and date at job start Tue Mar 31 2020 17:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.49815 * 2 1 4 4 C 1.53037 * 109.49631 * 239.90136 * 2 1 3 5 5 C 1.53037 * 109.54005 * 178.68630 * 4 2 1 6 6 H 1.09008 * 109.49567 * 301.38509 * 5 4 2 7 7 O 1.42900 * 109.50106 * 181.31982 * 5 4 2 8 8 C 1.52761 * 109.38647 * 61.23673 * 5 4 2 9 9 N 1.46927 * 109.00723 * 305.59374 * 8 5 4 10 10 C 1.34775 * 120.63087 * 233.57759 * 9 8 5 11 11 O 1.21721 * 119.99758 * 184.82748 * 10 9 8 12 12 C 1.46258 * 119.99824 * 4.83155 * 10 9 8 13 13 C 1.35018 * 119.99785 * 187.08679 * 12 10 9 14 14 C 1.46964 * 120.00275 * 10.70079 * 13 12 10 15 15 C 1.40023 * 120.10101 * 226.50040 * 14 13 12 16 16 C 1.37605 * 119.89602 * 179.97438 * 15 14 13 17 17 C 1.39177 * 120.10086 * 359.97438 * 16 15 14 18 18 O 1.35570 * 119.89928 * 180.02562 * 17 16 15 19 19 C 1.34786 * 116.99781 * 5.74594 * 18 17 16 20 20 H 1.08001 * 119.99698 * 354.61645 * 19 18 17 21 21 C 1.38720 * 119.99971 * 174.89879 * 19 18 17 22 22 N 1.31510 * 119.99827 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99814 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47045 * 59.99802 * 23 21 19 25 25 H 1.48506 * 109.46861 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47130 * 299.99748 * 23 21 19 27 27 C 1.39178 * 120.20431 * 0.27422 * 17 16 15 28 28 C 1.37601 * 120.09830 * 359.45001 * 27 17 16 29 29 C 1.46927 * 118.73769 * 53.30704 * 9 8 5 30 30 H 1.09000 * 109.47360 * 299.93640 * 1 2 3 31 31 H 1.09000 * 109.47152 * 59.93477 * 1 2 3 32 32 H 1.08998 * 109.47262 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46551 * 298.70298 * 4 2 1 34 34 H 1.09002 * 109.46148 * 58.66593 * 4 2 1 35 35 H 0.96705 * 113.99818 * 180.02562 * 7 5 4 36 36 H 1.08991 * 109.51701 * 185.71215 * 8 5 4 37 37 H 1.09002 * 109.42641 * 65.42532 * 8 5 4 38 38 H 1.07998 * 119.99857 * 7.08305 * 12 10 9 39 39 H 1.07996 * 119.99926 * 190.70184 * 13 12 10 40 40 H 1.07990 * 120.05089 * 359.97438 * 15 14 13 41 41 H 1.08000 * 119.94864 * 180.02562 * 16 15 14 42 42 H 0.97001 * 119.99633 * 179.97438 * 22 21 19 43 43 H 1.07997 * 119.94792 * 179.72542 * 27 17 16 44 44 H 1.07997 * 120.04805 * 180.27786 * 28 27 17 45 45 H 1.09006 * 109.59032 * 66.43101 * 29 9 8 46 46 H 1.09000 * 109.58521 * 186.71057 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7235 -1.2481 5 6 3.5708 -0.6955 -1.2658 6 1 3.9159 0.3384 -1.2547 7 8 4.0461 -1.3443 -2.4470 8 6 4.1055 -1.4217 -0.0328 9 7 3.5046 -0.8288 1.1698 10 6 4.2811 -0.3850 2.1780 11 8 3.7708 0.0229 3.2050 12 6 5.7370 -0.3936 2.0380 13 6 6.5186 -0.0857 3.0950 14 6 5.9293 0.0273 4.4366 15 6 6.2480 1.1186 5.2540 16 6 5.6934 1.2205 6.5092 17 6 4.8165 0.2411 6.9664 18 8 4.2721 0.3458 8.2035 19 6 4.5263 1.4775 8.8902 20 1 5.2089 2.2114 8.4878 21 6 3.9157 1.6968 10.1163 22 7 3.0884 0.8008 10.6085 23 14 4.2686 3.2649 11.0682 24 1 3.8684 4.4396 10.2527 25 1 3.4973 3.2578 12.3372 26 1 5.7201 3.3440 11.3711 27 6 4.5008 -0.8480 6.1595 28 6 5.0462 -0.9553 4.9007 29 6 2.0413 -0.7235 1.2498 30 1 -0.3634 0.5128 0.8905 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6967 -1.7577 -1.2348 34 1 1.6582 -0.2251 -2.1388 35 1 5.0099 -1.3641 -2.5241 36 1 5.1894 -1.3161 0.0105 37 1 3.8411 -2.4775 -0.0908 38 1 6.1867 -0.6463 1.0892 39 1 7.5768 0.0776 2.9546 40 1 6.9280 1.8791 4.8998 41 1 5.9383 2.0620 7.1402 42 1 2.6617 0.9541 11.4660 43 1 3.8234 -1.6078 6.5201 44 1 4.7972 -1.7985 4.2735 45 1 1.6051 -1.7213 1.2985 46 1 1.7637 -0.1595 2.1403 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493370477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:55 Heat of formation + Delta-G solvation = -83.785344 kcal Electronic energy + Delta-G solvation = -28046.600838 eV Core-core repulsion = 24094.677199 eV Total energy + Delta-G solvation = -3951.923639 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.47219 -40.66410 -39.36776 -38.08699 -36.87104 -34.96451 -34.58539 -33.87386 -31.83930 -31.22371 -29.85105 -27.96235 -27.39394 -26.68928 -24.16597 -23.48065 -23.04552 -22.29685 -20.99080 -19.93756 -19.47471 -18.76866 -18.44685 -18.07433 -17.08668 -16.45674 -16.38663 -16.21053 -16.05127 -15.68366 -15.57977 -15.40650 -15.13182 -14.77658 -14.62345 -14.35477 -14.17538 -13.95603 -13.79641 -13.64016 -13.56950 -13.06251 -12.94483 -12.86549 -12.76170 -12.61095 -12.38282 -12.22256 -12.13593 -11.91569 -11.74586 -11.60643 -11.24964 -11.14998 -10.91732 -10.59057 -10.39877 -9.76845 -9.46531 -8.58714 -8.48950 -6.16352 -0.00590 0.69974 1.08153 1.32854 1.46074 1.50143 2.01266 2.16841 2.40857 2.85895 3.18407 3.19188 3.52109 3.68133 3.76543 3.82357 3.85421 3.97861 4.06432 4.12387 4.15258 4.18796 4.34435 4.51187 4.54275 4.58882 4.62440 4.67311 4.74168 4.78905 4.84219 4.90254 5.02541 5.05146 5.08486 5.16040 5.21658 5.24087 5.25447 5.35076 5.40744 5.56475 5.66264 5.71673 5.82115 6.01685 6.23970 6.46612 6.89938 6.94886 7.32653 7.77053 8.74249 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018961 B = 0.002532 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.384083 B =11053.716460 C =11909.882548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.066 0.934 4 C -0.106 4.106 5 C 0.097 3.903 6 H 0.061 0.939 7 O -0.573 6.573 8 C 0.076 3.924 9 N -0.609 5.609 10 C 0.527 3.473 11 O -0.565 6.565 12 C -0.236 4.236 13 C 0.011 3.989 14 C -0.157 4.157 15 C -0.048 4.048 16 C -0.257 4.257 17 C 0.126 3.874 18 O -0.231 6.231 19 C -0.416 4.416 20 H 0.103 0.897 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.022 2.978 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.254 1.254 27 C -0.219 4.219 28 C 0.008 3.992 29 C 0.111 3.889 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.399 0.601 36 H 0.117 0.883 37 H 0.079 0.921 38 H 0.176 0.824 39 H 0.173 0.827 40 H 0.149 0.851 41 H 0.120 0.880 42 H 0.274 0.726 43 H 0.100 0.900 44 H 0.118 0.882 45 H 0.072 0.928 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.252 -2.483 -28.514 29.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 H 0.085 0.915 4 C -0.144 4.144 5 C 0.037 3.963 6 H 0.079 0.921 7 O -0.381 6.381 8 C -0.047 4.047 9 N -0.343 5.343 10 C 0.320 3.680 11 O -0.446 6.446 12 C -0.256 4.256 13 C -0.009 4.009 14 C -0.158 4.158 15 C -0.066 4.066 16 C -0.276 4.276 17 C 0.075 3.925 18 O -0.138 6.138 19 C -0.492 4.492 20 H 0.120 0.880 21 C -0.221 4.221 22 N -0.560 5.560 23 Si 0.840 3.160 24 H -0.183 1.183 25 H -0.194 1.194 26 H -0.178 1.178 27 C -0.239 4.239 28 C -0.010 4.010 29 C -0.012 4.012 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.249 0.751 36 H 0.135 0.865 37 H 0.098 0.902 38 H 0.193 0.807 39 H 0.190 0.810 40 H 0.166 0.834 41 H 0.138 0.862 42 H 0.083 0.917 43 H 0.118 0.882 44 H 0.136 0.864 45 H 0.090 0.910 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.069 -2.555 -27.794 28.206 hybrid contribution 0.013 0.506 1.148 1.255 sum 4.082 -2.049 -26.646 27.034 Atomic orbital electron populations 1.21737 0.93024 1.02799 1.02487 1.21357 0.97084 0.99306 0.93564 0.91547 1.21521 0.93622 1.01668 0.97551 1.21928 0.95012 0.95404 0.83937 0.92065 1.86519 1.29024 1.81044 1.41491 1.22622 1.00525 0.98112 0.83417 1.48041 1.06520 1.61064 1.18626 1.19166 0.89430 0.77063 0.82341 1.91006 1.76266 1.48356 1.28930 1.23131 0.90756 1.09945 1.01730 1.22627 1.00526 0.88705 0.89000 1.18876 1.03238 0.97417 0.96267 1.21166 0.97123 0.96886 0.91402 1.21101 1.04815 1.01983 0.99677 1.19999 0.92309 0.94861 0.85284 1.83876 1.66092 1.40029 1.23763 1.21852 1.28502 0.96614 1.02268 0.88011 1.26681 0.95101 1.03174 0.97184 1.70173 1.29109 1.36906 1.19766 0.84619 0.79374 0.75051 0.76956 1.18293 1.19438 1.17761 1.20183 1.07707 0.99635 0.96361 1.20644 0.91399 0.97381 0.91603 1.21666 0.79824 1.00963 0.98746 0.92953 0.90944 0.91639 0.90970 0.90507 0.75056 0.86535 0.90249 0.80735 0.81009 0.83383 0.86196 0.91749 0.88159 0.86443 0.90961 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.20 71.98 0.66 -1.39 16 2 C -0.09 -1.54 2.87 -10.72 -0.03 -1.57 16 3 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.11 -1.44 4.82 30.62 0.15 -1.29 16 5 C 0.10 1.12 3.61 30.53 0.11 1.23 16 6 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 7 O -0.57 -5.88 13.32 -148.98 -1.98 -7.86 16 8 C 0.08 0.90 5.94 86.22 0.51 1.42 16 9 N -0.61 -12.60 2.98 -824.93 -2.46 -15.06 16 10 C 0.53 14.28 6.75 86.33 0.58 14.86 16 11 O -0.57 -21.91 11.76 -4.42 -0.05 -21.96 16 12 C -0.24 -4.50 9.22 23.61 0.22 -4.28 16 13 C 0.01 0.23 9.79 23.82 0.23 0.47 16 14 C -0.16 -5.41 4.43 -20.13 -0.09 -5.49 16 15 C -0.05 -1.78 9.79 22.55 0.22 -1.56 16 16 C -0.26 -12.11 9.14 22.35 0.20 -11.91 16 17 C 0.13 6.92 6.66 22.72 0.15 7.07 16 18 O -0.23 -14.91 9.74 -20.32 -0.20 -15.11 16 19 C -0.42 -25.53 9.48 67.94 0.64 -24.89 16 20 H 0.10 5.72 5.18 -2.91 -0.02 5.70 16 21 C -0.02 -1.42 5.49 84.86 0.47 -0.96 16 22 N -0.92 -58.79 13.67 21.62 0.30 -58.50 16 23 Si 1.02 44.35 29.55 68.60 2.03 46.37 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 27 C -0.22 -10.79 9.97 22.35 0.22 -10.57 16 28 C 0.01 0.32 6.68 22.55 0.15 0.47 16 29 C 0.11 2.42 5.71 86.36 0.49 2.91 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.40 0.44 9.08 -74.05 -0.67 -0.23 16 36 H 0.12 0.74 5.32 -2.39 -0.01 0.73 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 38 H 0.18 1.54 5.91 -2.91 -0.02 1.52 16 39 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.15 4.21 8.06 -2.92 -0.02 4.18 16 41 H 0.12 5.65 5.62 -2.91 -0.02 5.64 16 42 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 43 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 44 H 0.12 4.19 7.27 -2.91 -0.02 4.17 16 45 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 46 H 0.06 1.85 7.03 -2.39 -0.02 1.83 16 Total: -1.00 -85.72 373.06 2.86 -82.86 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.33 Total: 24.74 kcal Atomic # 6 Polarization: -40.38 SS G_CDS: 4.90 Total: -35.48 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -2.16 Total: -73.55 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -2.23 Total: -44.93 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -85.72 2.86 -82.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493370477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.929 kcal (2) G-P(sol) polarization free energy of solvation -85.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds