Wall clock time and date at job start Tue Mar 31 2020 17:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.49273 * 2 1 4 4 C 1.53039 * 109.49782 * 239.90051 * 2 1 3 5 5 C 1.53044 * 109.53440 * 178.68384 * 4 2 1 6 6 H 1.09005 * 109.49467 * 301.38054 * 5 4 2 7 7 O 1.42898 * 109.49618 * 181.32038 * 5 4 2 8 8 C 1.52761 * 109.38343 * 61.24088 * 5 4 2 9 9 N 1.46920 * 109.00754 * 305.58676 * 8 5 4 10 10 C 1.34775 * 120.63191 * 233.58206 * 9 8 5 11 11 O 1.21727 * 120.00053 * 5.07594 * 10 9 8 12 12 C 1.46255 * 120.00231 * 185.07525 * 10 9 8 13 13 C 1.35028 * 119.99903 * 175.03374 * 12 10 9 14 14 C 1.46957 * 119.99818 * 180.27482 * 13 12 10 15 15 C 1.40027 * 120.10260 * 359.44498 * 14 13 12 16 16 C 1.37593 * 119.89755 * 179.78852 * 15 14 13 17 17 C 1.39174 * 120.10560 * 0.49082 * 16 15 14 18 18 O 1.35564 * 119.90357 * 179.76243 * 17 16 15 19 19 C 1.34783 * 117.00458 * 185.30004 * 18 17 16 20 20 H 1.08002 * 119.99595 * 354.96780 * 19 18 17 21 21 C 1.38716 * 120.00437 * 174.96380 * 19 18 17 22 22 N 1.31511 * 119.99516 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00422 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47161 * 89.99947 * 23 21 19 25 25 H 1.48498 * 109.47384 * 210.00522 * 23 21 19 26 26 H 1.48507 * 109.46737 * 330.00094 * 23 21 19 27 27 C 1.39175 * 120.19637 * 359.73622 * 17 16 15 28 28 C 1.37591 * 120.10753 * 0.02681 * 27 17 16 29 29 C 1.46926 * 118.74158 * 53.31314 * 9 8 5 30 30 H 1.08998 * 109.47840 * 299.93286 * 1 2 3 31 31 H 1.09003 * 109.47074 * 59.93829 * 1 2 3 32 32 H 1.09003 * 109.46947 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.46336 * 298.70450 * 4 2 1 34 34 H 1.09000 * 109.46114 * 58.66816 * 4 2 1 35 35 H 0.96700 * 113.99842 * 179.97438 * 7 5 4 36 36 H 1.09003 * 109.50612 * 185.70822 * 8 5 4 37 37 H 1.08998 * 109.43029 * 65.42237 * 8 5 4 38 38 H 1.08001 * 120.00101 * 355.02730 * 12 10 9 39 39 H 1.08001 * 119.99996 * 359.97438 * 13 12 10 40 40 H 1.08003 * 120.04818 * 359.97438 * 15 14 13 41 41 H 1.08009 * 119.94694 * 180.22413 * 16 15 14 42 42 H 0.96999 * 119.99413 * 179.97438 * 22 21 19 43 43 H 1.08003 * 119.94672 * 180.02562 * 27 17 16 44 44 H 1.08006 * 120.05611 * 179.97438 * 28 27 17 45 45 H 1.08994 * 109.58718 * 66.42291 * 29 9 8 46 46 H 1.08997 * 109.59227 * 186.71087 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0408 -0.7235 -1.2481 5 6 3.5709 -0.6954 -1.2657 6 1 3.9159 0.3386 -1.2547 7 8 4.0463 -1.3442 -2.4468 8 6 4.1055 -1.4215 -0.0326 9 7 3.5045 -0.8287 1.1699 10 6 4.2810 -0.3849 2.1781 11 8 5.4925 -0.3878 2.0600 12 6 3.6680 0.1003 3.4142 13 6 4.4455 0.4506 4.4611 14 6 3.8293 0.9323 5.7052 15 6 2.4366 1.0400 5.8033 16 6 1.8639 1.4875 6.9716 17 6 2.6669 1.8425 8.0514 18 8 2.0985 2.2874 9.1989 19 6 2.9312 2.7186 10.1672 20 1 3.9997 2.6241 10.0420 21 6 2.4157 3.2837 11.3244 22 7 1.1145 3.3983 11.4769 23 14 3.5696 3.8819 12.6660 24 1 3.9166 5.3050 12.4222 25 1 2.9021 3.7542 13.9863 26 1 4.8077 3.0618 12.6559 27 6 4.0518 1.7416 7.9569 28 6 4.6332 1.2906 6.7943 29 6 2.0413 -0.7234 1.2499 30 1 -0.3635 0.5128 0.8905 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6968 -1.7576 -1.2348 34 1 1.6583 -0.2251 -2.1388 35 1 5.0100 -1.3632 -2.5243 36 1 5.1895 -1.3158 0.0106 37 1 3.8412 -2.4774 -0.0906 38 1 2.5935 0.1785 3.4896 39 1 5.5200 0.3720 4.3859 40 1 1.8128 0.7694 4.9641 41 1 0.7896 1.5674 7.0494 42 1 0.7540 3.7932 12.2863 43 1 4.6711 2.0178 8.7975 44 1 5.7080 1.2130 6.7217 45 1 1.6052 -1.7212 1.2985 46 1 1.7635 -0.1595 2.1403 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493370478.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:00 Heat of formation + Delta-G solvation = -76.956220 kcal Electronic energy + Delta-G solvation = -27073.112966 eV Core-core repulsion = 23121.485460 eV Total energy + Delta-G solvation = -3951.627506 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.46383 -39.22400 -38.29607 -36.90812 -36.38385 -33.77095 -33.30846 -32.36148 -30.88178 -30.45456 -28.34472 -27.12850 -26.00218 -25.52460 -23.36254 -22.25820 -21.97555 -20.89037 -20.09541 -18.76476 -18.09664 -17.51853 -17.44263 -17.02702 -16.18027 -15.65217 -15.24416 -14.99393 -14.81550 -14.58748 -14.40265 -14.16388 -13.85989 -13.71525 -13.48459 -13.29207 -13.08677 -13.04260 -12.66178 -12.44256 -12.31338 -12.17924 -11.90213 -11.80507 -11.73134 -11.24878 -11.14915 -11.11234 -11.05805 -10.88533 -10.69714 -10.56198 -10.55489 -9.77142 -9.63440 -9.53017 -8.92516 -8.75236 -8.41460 -7.14630 -6.67866 -4.22549 1.02144 2.10637 2.50457 2.81316 3.02210 3.03034 3.07815 3.48600 3.75435 3.80047 4.33940 4.41533 4.48385 4.50909 4.61134 4.80910 4.83878 4.89201 4.98181 5.07812 5.10190 5.16895 5.26503 5.32173 5.42196 5.46777 5.49264 5.55075 5.59880 5.62381 5.64534 5.76254 5.80601 5.97365 5.98496 6.08979 6.21899 6.43212 6.48542 6.57294 6.75957 6.88733 7.09789 7.20229 7.22304 7.24109 7.34752 7.60766 7.77515 8.22037 8.76915 9.43562 10.48671 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.026612 B = 0.001961 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.892778 B =14274.363072 C =15183.444908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 H 0.078 0.922 4 C -0.107 4.107 5 C 0.092 3.908 6 H 0.059 0.941 7 O -0.564 6.564 8 C 0.082 3.918 9 N -0.613 5.613 10 C 0.560 3.440 11 O -0.559 6.559 12 C -0.287 4.287 13 C 0.042 3.958 14 C -0.200 4.200 15 C -0.042 4.042 16 C -0.199 4.199 17 C 0.167 3.833 18 O -0.161 6.161 19 C -0.393 4.393 20 H 0.098 0.902 21 C 0.041 3.959 22 N -0.851 5.851 23 Si 0.945 3.055 24 H -0.271 1.271 25 H -0.275 1.275 26 H -0.265 1.265 27 C -0.242 4.242 28 C -0.034 4.034 29 C 0.109 3.891 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.381 0.619 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.274 0.726 43 H 0.131 0.869 44 H 0.114 0.886 45 H 0.070 0.930 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.229 -6.954 -20.514 21.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 H 0.097 0.903 4 C -0.145 4.145 5 C 0.032 3.968 6 H 0.077 0.923 7 O -0.369 6.369 8 C -0.041 4.041 9 N -0.347 5.347 10 C 0.355 3.645 11 O -0.439 6.439 12 C -0.308 4.308 13 C 0.022 3.978 14 C -0.201 4.201 15 C -0.060 4.060 16 C -0.219 4.219 17 C 0.111 3.889 18 O -0.062 6.062 19 C -0.468 4.468 20 H 0.115 0.885 21 C -0.165 4.165 22 N -0.484 5.484 23 Si 0.769 3.231 24 H -0.196 1.196 25 H -0.200 1.200 26 H -0.189 1.189 27 C -0.262 4.262 28 C -0.052 4.052 29 C -0.014 4.014 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.228 0.772 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.084 0.916 43 H 0.149 0.851 44 H 0.132 0.868 45 H 0.088 0.912 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.798 -6.921 -20.392 21.549 hybrid contribution 1.081 0.356 0.757 1.367 sum 1.879 -6.566 -19.635 20.789 Atomic orbital electron populations 1.21752 0.93579 1.02385 1.02535 1.21497 0.96539 1.00275 0.94210 0.90325 1.21548 0.92897 1.01841 0.98195 1.22061 0.95314 0.95448 0.84000 0.92305 1.86508 1.27126 1.81211 1.42082 1.22143 1.00168 0.97405 0.84399 1.47804 1.06782 1.62239 1.17860 1.18442 0.86218 0.76270 0.83614 1.90761 1.14312 1.56874 1.81999 1.22496 1.00305 1.13820 0.94196 1.22308 0.99255 0.85898 0.90343 1.18449 0.93293 1.13671 0.94708 1.20854 0.93523 0.95590 0.96068 1.20143 0.99444 1.09802 0.92469 1.19611 0.91430 0.91115 0.86788 1.83900 1.35857 1.66771 1.19690 1.21480 0.90146 1.39946 0.95271 0.88514 1.25404 0.96868 0.96154 0.98071 1.70014 1.11165 1.39644 1.27545 0.85639 0.79149 0.79367 0.78935 1.19606 1.20038 1.18943 1.21101 0.94791 1.10514 0.99754 1.20988 0.98421 0.93959 0.91855 1.21938 0.79366 1.01167 0.98940 0.91801 0.92121 0.92242 0.90956 0.90899 0.77192 0.88879 0.91059 0.85546 0.85974 0.86536 0.86104 0.91567 0.85102 0.86807 0.91205 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.20 37.16 0.34 -0.50 16 2 C -0.11 -0.77 2.87 -90.50 -0.26 -1.03 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.11 -0.83 4.82 -26.69 -0.13 -0.95 16 5 C 0.09 0.79 3.61 -26.83 -0.10 0.69 16 6 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 7 O -0.56 -4.70 13.32 -35.23 -0.47 -5.17 16 8 C 0.08 0.80 6.04 -3.94 -0.02 0.78 16 9 N -0.61 -6.77 2.98 -174.74 -0.52 -7.29 16 10 C 0.56 7.96 7.61 -13.04 -0.10 7.86 16 11 O -0.56 -9.70 15.66 5.16 0.08 -9.62 16 12 C -0.29 -3.91 8.73 -37.50 -0.33 -4.23 16 13 C 0.04 0.63 9.45 -37.19 -0.35 0.28 16 14 C -0.20 -3.34 5.87 -105.03 -0.62 -3.96 16 15 C -0.04 -0.70 9.40 -39.15 -0.37 -1.07 16 16 C -0.20 -3.90 9.97 -39.47 -0.39 -4.29 16 17 C 0.17 3.78 6.66 -38.89 -0.26 3.52 16 18 O -0.16 -4.33 9.74 0.75 0.01 -4.32 16 19 C -0.39 -10.33 9.48 30.91 0.29 -10.03 16 20 H 0.10 2.33 5.18 -52.49 -0.27 2.06 16 21 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 22 N -0.85 -23.59 13.67 55.48 0.76 -22.83 16 23 Si 0.95 19.34 29.55 -169.99 -5.02 14.31 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 26 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 27 C -0.24 -4.94 9.14 -39.47 -0.36 -5.30 16 28 C -0.03 -0.59 9.78 -39.15 -0.38 -0.98 16 29 C 0.11 0.91 5.60 -3.71 -0.02 0.89 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.38 1.76 9.08 45.56 0.41 2.17 16 36 H 0.09 1.01 6.99 -51.93 -0.36 0.65 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.13 1.47 3.90 -52.49 -0.20 1.26 16 39 H 0.12 1.83 7.53 -52.49 -0.40 1.43 16 40 H 0.12 1.55 6.16 -52.48 -0.32 1.23 16 41 H 0.12 2.24 8.06 -52.48 -0.42 1.82 16 42 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.13 2.64 5.61 -52.48 -0.29 2.35 16 44 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.10 0.78 5.37 -51.93 -0.28 0.50 16 LS Contribution 377.51 15.07 5.69 5.69 Total: -1.00 -31.39 377.51 -8.13 -39.52 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -5.50 Total: 7.05 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -3.15 Total: -17.35 kcal Atomic # 7 Polarization: -30.36 SS G_CDS: 0.24 Total: -30.12 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.38 Total: -19.11 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.39 -8.13 -39.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493370478.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.433 kcal (2) G-P(sol) polarization free energy of solvation -31.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds