Wall clock time and date at job start Tue Mar 31 2020 17:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.49273 * 2 1 4 4 C 1.53039 * 109.49782 * 239.90051 * 2 1 3 5 5 C 1.53044 * 109.53440 * 178.68384 * 4 2 1 6 6 H 1.09005 * 109.49467 * 301.38054 * 5 4 2 7 7 O 1.42898 * 109.49618 * 181.32038 * 5 4 2 8 8 C 1.52761 * 109.38343 * 61.24088 * 5 4 2 9 9 N 1.46920 * 109.00754 * 305.58676 * 8 5 4 10 10 C 1.34775 * 120.63191 * 233.58206 * 9 8 5 11 11 O 1.21727 * 120.00053 * 5.07594 * 10 9 8 12 12 C 1.46255 * 120.00231 * 185.07525 * 10 9 8 13 13 C 1.35028 * 119.99903 * 175.03374 * 12 10 9 14 14 C 1.46957 * 119.99818 * 180.27482 * 13 12 10 15 15 C 1.40027 * 120.10260 * 359.44498 * 14 13 12 16 16 C 1.37593 * 119.89755 * 179.78852 * 15 14 13 17 17 C 1.39174 * 120.10560 * 0.49082 * 16 15 14 18 18 O 1.35564 * 119.90357 * 179.76243 * 17 16 15 19 19 C 1.34783 * 117.00458 * 185.30004 * 18 17 16 20 20 H 1.08002 * 119.99595 * 354.96780 * 19 18 17 21 21 C 1.38716 * 120.00437 * 174.96380 * 19 18 17 22 22 N 1.31511 * 119.99516 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00422 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47161 * 89.99947 * 23 21 19 25 25 H 1.48498 * 109.47384 * 210.00522 * 23 21 19 26 26 H 1.48507 * 109.46737 * 330.00094 * 23 21 19 27 27 C 1.39175 * 120.19637 * 359.73622 * 17 16 15 28 28 C 1.37591 * 120.10753 * 0.02681 * 27 17 16 29 29 C 1.46926 * 118.74158 * 53.31314 * 9 8 5 30 30 H 1.08998 * 109.47840 * 299.93286 * 1 2 3 31 31 H 1.09003 * 109.47074 * 59.93829 * 1 2 3 32 32 H 1.09003 * 109.46947 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.46336 * 298.70450 * 4 2 1 34 34 H 1.09000 * 109.46114 * 58.66816 * 4 2 1 35 35 H 0.96700 * 113.99842 * 179.97438 * 7 5 4 36 36 H 1.09003 * 109.50612 * 185.70822 * 8 5 4 37 37 H 1.08998 * 109.43029 * 65.42237 * 8 5 4 38 38 H 1.08001 * 120.00101 * 355.02730 * 12 10 9 39 39 H 1.08001 * 119.99996 * 359.97438 * 13 12 10 40 40 H 1.08003 * 120.04818 * 359.97438 * 15 14 13 41 41 H 1.08009 * 119.94694 * 180.22413 * 16 15 14 42 42 H 0.96999 * 119.99413 * 179.97438 * 22 21 19 43 43 H 1.08003 * 119.94672 * 180.02562 * 27 17 16 44 44 H 1.08006 * 120.05611 * 179.97438 * 28 27 17 45 45 H 1.08994 * 109.58718 * 66.42291 * 29 9 8 46 46 H 1.08997 * 109.59227 * 186.71087 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0408 -0.7235 -1.2481 5 6 3.5709 -0.6954 -1.2657 6 1 3.9159 0.3386 -1.2547 7 8 4.0463 -1.3442 -2.4468 8 6 4.1055 -1.4215 -0.0326 9 7 3.5045 -0.8287 1.1699 10 6 4.2810 -0.3849 2.1781 11 8 5.4925 -0.3878 2.0600 12 6 3.6680 0.1003 3.4142 13 6 4.4455 0.4506 4.4611 14 6 3.8293 0.9323 5.7052 15 6 2.4366 1.0400 5.8033 16 6 1.8639 1.4875 6.9716 17 6 2.6669 1.8425 8.0514 18 8 2.0985 2.2874 9.1989 19 6 2.9312 2.7186 10.1672 20 1 3.9997 2.6241 10.0420 21 6 2.4157 3.2837 11.3244 22 7 1.1145 3.3983 11.4769 23 14 3.5696 3.8819 12.6660 24 1 3.9166 5.3050 12.4222 25 1 2.9021 3.7542 13.9863 26 1 4.8077 3.0618 12.6559 27 6 4.0518 1.7416 7.9569 28 6 4.6332 1.2906 6.7943 29 6 2.0413 -0.7234 1.2499 30 1 -0.3635 0.5128 0.8905 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6968 -1.7576 -1.2348 34 1 1.6583 -0.2251 -2.1388 35 1 5.0100 -1.3632 -2.5243 36 1 5.1895 -1.3158 0.0106 37 1 3.8412 -2.4774 -0.0906 38 1 2.5935 0.1785 3.4896 39 1 5.5200 0.3720 4.3859 40 1 1.8128 0.7694 4.9641 41 1 0.7896 1.5674 7.0494 42 1 0.7540 3.7932 12.2863 43 1 4.6711 2.0178 8.7975 44 1 5.7080 1.2130 6.7217 45 1 1.6052 -1.7212 1.2985 46 1 1.7635 -0.1595 2.1403 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493370478.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:59 Heat of formation + Delta-G solvation = -97.407967 kcal Electronic energy + Delta-G solvation = -27073.999820 eV Core-core repulsion = 23121.485460 eV Total energy + Delta-G solvation = -3952.514360 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.40676 -40.81115 -39.24759 -38.45396 -37.09391 -34.78204 -34.57645 -34.03769 -31.98129 -31.65815 -29.67883 -27.81109 -27.50469 -26.67963 -24.54892 -23.67169 -22.91072 -21.88758 -21.11183 -20.13246 -19.40841 -18.84688 -18.53489 -18.08114 -17.18390 -16.56203 -16.44720 -16.27010 -16.00921 -15.86460 -15.61347 -15.47440 -15.30138 -14.88244 -14.61895 -14.32931 -14.12886 -13.97605 -13.90699 -13.59728 -13.32215 -13.30489 -12.92626 -12.80888 -12.73653 -12.71017 -12.54656 -12.21112 -12.12975 -11.89840 -11.66662 -11.58262 -11.25223 -11.21189 -11.12536 -10.88163 -10.58313 -9.89184 -9.68173 -8.68349 -8.52291 -6.18148 -0.27440 0.58852 1.10908 1.36066 1.45876 1.52832 1.91401 2.15231 2.29147 2.85896 3.16541 3.17604 3.41976 3.51599 3.77050 3.80134 3.85501 3.92751 3.98354 4.08339 4.16011 4.23696 4.27165 4.45526 4.47312 4.52054 4.62732 4.67004 4.68414 4.78599 4.86100 4.93609 4.94527 5.02674 5.06476 5.16411 5.19210 5.22551 5.31456 5.33817 5.43721 5.50040 5.59167 5.64069 5.80091 5.97426 6.10138 6.33837 6.73686 6.92222 7.12463 7.69175 8.69670 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.026612 B = 0.001961 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.892778 B =14274.363072 C =15183.444908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.071 0.929 4 C -0.106 4.106 5 C 0.098 3.902 6 H 0.051 0.949 7 O -0.574 6.574 8 C 0.082 3.918 9 N -0.605 5.605 10 C 0.551 3.449 11 O -0.594 6.594 12 C -0.252 4.252 13 C 0.021 3.979 14 C -0.172 4.172 15 C -0.036 4.036 16 C -0.206 4.206 17 C 0.131 3.869 18 O -0.218 6.218 19 C -0.416 4.416 20 H 0.105 0.895 21 C -0.019 4.019 22 N -0.913 5.913 23 Si 1.018 2.982 24 H -0.263 1.263 25 H -0.271 1.271 26 H -0.253 1.253 27 C -0.250 4.250 28 C -0.039 4.039 29 C 0.100 3.900 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.395 0.605 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.154 0.846 39 H 0.124 0.876 40 H 0.160 0.840 41 H 0.124 0.876 42 H 0.275 0.725 43 H 0.124 0.876 44 H 0.144 0.856 45 H 0.086 0.914 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.732 -8.186 -23.556 24.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.090 0.910 4 C -0.144 4.144 5 C 0.038 3.962 6 H 0.069 0.931 7 O -0.381 6.381 8 C -0.041 4.041 9 N -0.337 5.337 10 C 0.345 3.655 11 O -0.477 6.477 12 C -0.272 4.272 13 C 0.001 3.999 14 C -0.173 4.173 15 C -0.053 4.053 16 C -0.225 4.225 17 C 0.078 3.922 18 O -0.123 6.123 19 C -0.492 4.492 20 H 0.123 0.877 21 C -0.218 4.218 22 N -0.549 5.549 23 Si 0.837 3.163 24 H -0.188 1.188 25 H -0.196 1.196 26 H -0.176 1.176 27 C -0.269 4.269 28 C -0.057 4.057 29 C -0.021 4.021 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.245 0.755 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.171 0.829 39 H 0.142 0.858 40 H 0.177 0.823 41 H 0.142 0.858 42 H 0.084 0.916 43 H 0.142 0.858 44 H 0.161 0.839 45 H 0.105 0.895 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.314 -8.192 -23.527 24.947 hybrid contribution 1.030 0.463 1.014 1.518 sum 2.344 -7.729 -22.514 23.919 Atomic orbital electron populations 1.21737 0.92218 1.03026 1.02981 1.21437 0.97522 0.99537 0.93358 0.91041 1.21566 0.92076 1.02157 0.98579 1.21967 0.95962 0.94752 0.83510 0.93093 1.86485 1.28757 1.81096 1.41777 1.22223 0.99460 0.98031 0.84400 1.47897 1.07915 1.60588 1.17298 1.18590 0.85955 0.76514 0.84432 1.90760 1.15916 1.58329 1.82724 1.22811 1.01519 1.09763 0.93091 1.22192 0.99619 0.88021 0.90039 1.18758 0.93405 1.10311 0.94805 1.21263 0.93968 0.94070 0.96041 1.20421 0.99730 1.09651 0.92690 1.20195 0.92940 0.92037 0.86983 1.83883 1.36815 1.70317 1.21335 1.21887 0.90714 1.40652 0.95932 0.87727 1.26602 0.98564 0.96213 1.00377 1.70147 1.13307 1.42801 1.28688 0.84590 0.77151 0.79004 0.75545 1.18814 1.19574 1.17620 1.21199 0.94059 1.10837 1.00782 1.21309 1.00190 0.93276 0.90953 1.22229 0.77478 1.02532 0.99882 0.91376 0.91752 0.91511 0.90609 0.90652 0.75483 0.90234 0.90089 0.82876 0.85809 0.82274 0.85771 0.91592 0.85790 0.83869 0.89531 0.87809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.20 71.98 0.66 -0.47 16 2 C -0.10 -1.09 2.87 -10.71 -0.03 -1.12 16 3 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.11 -1.31 4.82 30.62 0.15 -1.16 16 5 C 0.10 1.44 3.61 30.53 0.11 1.55 16 6 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 7 O -0.57 -8.25 13.32 -148.98 -1.98 -10.23 16 8 C 0.08 1.40 6.04 86.22 0.52 1.92 16 9 N -0.60 -11.33 2.98 -824.95 -2.46 -13.79 16 10 C 0.55 13.90 7.61 86.33 0.66 14.55 16 11 O -0.59 -19.36 15.66 -4.44 -0.07 -19.43 16 12 C -0.25 -5.74 8.73 23.62 0.21 -5.53 16 13 C 0.02 0.56 9.45 23.82 0.23 0.78 16 14 C -0.17 -5.22 5.87 -20.13 -0.12 -5.33 16 15 C -0.04 -1.07 9.40 22.55 0.21 -0.86 16 16 C -0.21 -7.97 9.97 22.34 0.22 -7.74 16 17 C 0.13 6.11 6.66 22.72 0.15 6.27 16 18 O -0.22 -12.49 9.74 -20.22 -0.20 -12.69 16 19 C -0.42 -23.17 9.48 67.93 0.64 -22.53 16 20 H 0.11 5.33 5.18 -2.91 -0.02 5.31 16 21 C -0.02 -1.02 5.49 84.86 0.47 -0.56 16 22 N -0.91 -53.86 13.67 21.62 0.30 -53.56 16 23 Si 1.02 41.17 29.55 68.60 2.03 43.19 16 24 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 25 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 26 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 27 C -0.25 -10.30 9.14 22.34 0.20 -10.10 16 28 C -0.04 -1.31 9.78 22.55 0.22 -1.09 16 29 C 0.10 1.26 5.60 86.36 0.48 1.74 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.40 2.87 9.08 -74.06 -0.67 2.20 16 36 H 0.08 1.60 6.99 -2.39 -0.02 1.58 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.15 2.64 3.90 -2.91 -0.01 2.63 16 39 H 0.12 3.33 7.53 -2.91 -0.02 3.31 16 40 H 0.16 3.38 6.16 -2.91 -0.02 3.36 16 41 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16 42 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 43 H 0.12 5.19 5.61 -2.91 -0.02 5.18 16 44 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 45 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.10 1.13 5.37 -2.39 -0.01 1.12 16 Total: -1.00 -73.02 377.51 2.94 -70.08 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.34 Total: 26.11 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 4.98 Total: -29.68 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -2.16 Total: -67.35 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -2.25 Total: -42.35 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Total: -73.02 2.94 -70.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493370478.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.330 kcal (2) G-P(sol) polarization free energy of solvation -73.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds