Wall clock time and date at job start Tue Mar 31 2020 17:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.57410 * 2 1 4 4 C 1.53096 * 109.52178 * 239.84190 * 2 1 3 5 5 O 1.42900 * 109.41522 * 182.48457 * 4 2 1 6 6 C 1.42899 * 114.09711 * 61.16155 * 5 4 2 7 7 C 1.53095 * 109.41377 * 298.83901 * 6 5 4 8 8 C 1.53173 * 109.52228 * 120.16026 * 2 1 3 9 9 H 1.09005 * 109.54617 * 296.74628 * 8 2 1 10 10 N 1.46495 * 109.54974 * 57.01643 * 8 2 1 11 11 C 1.34773 * 120.00670 * 204.55591 * 10 8 2 12 12 O 1.21726 * 119.99607 * 0.02562 * 11 10 8 13 13 C 1.46258 * 120.00386 * 179.97438 * 11 10 8 14 14 C 1.35013 * 120.00128 * 173.21341 * 13 11 10 15 15 C 1.46972 * 120.00011 * 348.68641 * 14 13 11 16 16 C 1.40022 * 120.10064 * 316.40357 * 15 14 13 17 17 C 1.37594 * 119.89590 * 179.69512 * 16 15 14 18 18 C 1.39179 * 120.10026 * 0.60226 * 17 16 15 19 19 O 1.35571 * 119.89850 * 179.69871 * 18 17 16 20 20 C 1.34783 * 117.00141 * 174.33460 * 19 18 17 21 21 H 1.08001 * 119.99627 * 5.06189 * 20 19 18 22 22 C 1.38721 * 120.00019 * 185.05818 * 20 19 18 23 23 N 1.31508 * 119.99940 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99835 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47213 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.47178 * 120.00156 * 24 22 20 27 27 H 1.48503 * 109.47048 * 239.99934 * 24 22 20 28 28 C 1.39175 * 120.20356 * 359.67055 * 18 17 16 29 29 C 1.37600 * 120.10206 * 0.02863 * 28 18 17 30 30 H 1.08997 * 109.46876 * 299.84226 * 1 2 3 31 31 H 1.08996 * 109.46886 * 59.84404 * 1 2 3 32 32 H 1.09003 * 109.47013 * 179.84360 * 1 2 3 33 33 H 1.09003 * 109.47930 * 62.50034 * 4 2 1 34 34 H 1.09002 * 109.49114 * 302.47665 * 4 2 1 35 35 H 1.09003 * 109.48179 * 178.86123 * 6 5 4 36 36 H 1.09001 * 109.49418 * 58.82805 * 6 5 4 37 37 H 1.09001 * 109.52200 * 297.70231 * 7 6 5 38 38 H 1.09005 * 109.52137 * 177.51464 * 7 6 5 39 39 H 0.97009 * 119.99426 * 24.55397 * 10 8 2 40 40 H 1.08002 * 119.99948 * 353.21972 * 13 11 10 41 41 H 1.07996 * 120.00281 * 168.68583 * 14 13 11 42 42 H 1.07999 * 120.04855 * 359.97438 * 16 15 14 43 43 H 1.07996 * 119.95164 * 180.27240 * 17 16 15 44 44 H 0.97001 * 119.99761 * 179.97438 * 23 22 20 45 45 H 1.07997 * 119.95041 * 179.97438 * 28 18 17 46 46 H 1.07995 * 120.04962 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7249 -1.2476 5 8 3.4694 -0.7743 -1.2164 6 6 4.0043 -1.4817 -0.0958 7 6 3.5716 -0.7872 1.1981 8 6 2.0419 -0.7253 1.2482 9 1 1.7280 -0.1825 2.1399 10 7 1.4974 -2.0849 1.2831 11 6 1.3799 -2.7340 2.4583 12 8 1.7259 -2.1904 3.4910 13 6 0.8358 -4.0911 2.4931 14 6 0.8445 -4.7926 3.6466 15 6 1.6151 -4.3033 4.7985 16 6 2.9095 -3.8017 4.6154 17 6 3.6249 -3.3389 5.6958 18 6 3.0684 -3.3803 6.9709 19 8 3.7792 -2.9288 8.0334 20 6 3.1438 -2.8864 9.2212 21 1 2.1420 -3.2796 9.3121 22 6 3.7765 -2.3376 10.3271 23 7 4.9961 -1.8583 10.2163 24 14 2.8960 -2.2794 11.9735 25 1 1.5446 -2.8789 11.8337 26 1 3.6752 -3.0456 12.9789 27 1 2.7685 -0.8679 12.4170 28 6 1.7844 -3.8832 7.1584 29 6 1.0592 -4.3426 6.0830 30 1 -0.3633 0.5114 0.8914 31 1 -0.3633 0.5162 -0.8886 32 1 -0.3633 -1.0277 -0.0028 33 1 1.7159 -0.1885 -2.1389 34 1 1.6431 -1.7393 -1.2679 35 1 5.0926 -1.4904 -0.1572 36 1 3.6317 -2.5060 -0.1007 37 1 3.9781 0.2239 1.2223 38 1 3.9417 -1.3501 2.0550 39 1 1.2213 -2.5179 0.4601 40 1 0.4270 -4.5322 1.5959 41 1 0.2852 -5.7133 3.7230 42 1 3.3440 -3.7741 3.6270 43 1 4.6216 -2.9478 5.5550 44 1 5.4383 -1.4743 10.9895 45 1 1.3567 -3.9138 8.1497 46 1 0.0630 -4.7330 6.2296 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493552826.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:55 Heat of formation + Delta-G solvation = -60.674961 kcal Electronic energy + Delta-G solvation = -28370.118027 eV Core-core repulsion = 24419.196530 eV Total energy + Delta-G solvation = -3950.921497 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.60668 -39.23167 -38.49135 -36.53851 -35.38459 -33.06659 -32.97347 -32.16590 -31.42437 -30.12668 -28.06653 -27.04788 -25.57383 -25.17157 -23.33641 -22.50672 -21.81402 -21.16067 -19.52629 -19.39832 -17.94479 -17.35204 -16.70093 -16.38771 -16.21269 -16.02708 -15.23261 -14.84541 -14.59597 -14.45480 -14.27227 -14.05979 -13.87673 -13.50973 -13.43778 -13.15631 -12.99848 -12.79285 -12.52365 -12.44195 -12.24169 -12.17146 -12.01923 -11.69955 -11.40370 -11.33639 -11.01937 -10.99464 -10.69989 -10.60667 -10.57983 -10.40678 -9.72092 -9.50028 -9.41737 -9.16701 -8.96972 -8.70003 -7.93160 -6.86864 -6.46264 -4.01918 1.23223 2.41745 2.69451 3.13285 3.14630 3.19750 3.29063 3.60903 3.62202 3.96787 4.31052 4.47630 4.57828 4.69140 4.79699 4.87283 5.03139 5.10037 5.11883 5.20357 5.21269 5.21692 5.34903 5.36430 5.47946 5.58030 5.62422 5.70186 5.72912 5.75209 5.83323 5.86476 5.93199 5.99915 6.24350 6.31733 6.42648 6.55302 6.59300 6.78258 6.91839 7.02912 7.12331 7.35640 7.44413 7.50060 7.64488 7.91667 8.00616 8.53552 8.99577 9.71478 10.71668 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017545 B = 0.002665 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.487192 B =10503.818953 C =11103.304845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 H 0.092 0.908 4 C 0.066 3.934 5 O -0.383 6.383 6 C 0.062 3.938 7 C -0.167 4.167 8 C 0.151 3.849 9 H 0.093 0.907 10 N -0.731 5.731 11 C 0.540 3.460 12 O -0.509 6.509 13 C -0.269 4.269 14 C 0.029 3.971 15 C -0.190 4.190 16 C 0.013 3.987 17 C -0.203 4.203 18 C 0.172 3.828 19 O -0.173 6.173 20 C -0.389 4.389 21 H 0.094 0.906 22 C 0.039 3.961 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.275 1.275 28 C -0.251 4.251 29 C -0.041 4.041 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.391 0.609 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.270 0.730 45 H 0.126 0.874 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.575 -1.034 -21.802 23.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 H 0.110 0.890 4 C -0.011 4.011 5 O -0.301 6.301 6 C -0.014 4.014 7 C -0.206 4.206 8 C 0.046 3.954 9 H 0.111 0.889 10 N -0.385 5.385 11 C 0.330 3.670 12 O -0.385 6.385 13 C -0.290 4.290 14 C 0.009 3.991 15 C -0.191 4.191 16 C -0.005 4.005 17 C -0.222 4.222 18 C 0.117 3.883 19 O -0.075 6.075 20 C -0.466 4.466 21 H 0.112 0.888 22 C -0.166 4.166 23 N -0.494 5.494 24 Si 0.767 3.233 25 H -0.190 1.190 26 H -0.201 1.201 27 H -0.201 1.201 28 C -0.270 4.270 29 C -0.060 4.060 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.226 0.774 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.118 0.882 43 H 0.131 0.869 44 H 0.080 0.920 45 H 0.143 0.857 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.785 -0.341 -20.979 22.379 hybrid contribution -0.872 -0.236 0.574 1.070 sum -8.657 -0.577 -20.405 22.173 Atomic orbital electron populations 1.21727 0.93881 1.02315 1.02244 1.22073 0.96958 1.01088 0.95285 0.88998 1.22618 0.81439 0.99321 0.97749 1.87937 1.19900 1.76545 1.45763 1.22575 0.99053 0.94624 0.85192 1.22580 0.96278 1.02701 0.99066 1.20880 0.92566 0.83419 0.98581 0.88868 1.46101 1.66740 1.16291 1.09371 1.18491 0.78221 0.87147 0.83158 1.91002 1.47611 1.68169 1.31680 1.22588 1.11760 0.95280 0.99408 1.22334 0.89787 0.95474 0.91485 1.18283 0.96037 1.12473 0.92277 1.20411 0.92505 0.91672 0.95958 1.19997 1.01614 1.10292 0.90291 1.19522 0.89985 0.90584 0.88223 1.83906 1.37728 1.71015 1.14875 1.21445 1.00548 1.40941 0.83625 0.88841 1.25329 0.96059 0.95858 0.99340 1.70033 1.11830 1.36426 1.31105 0.85631 0.79069 0.78415 0.80233 1.19035 1.20111 1.20101 1.20952 0.96488 1.10110 0.99435 1.20740 0.97537 0.96294 0.91397 0.91987 0.92354 0.92348 0.88764 0.93451 0.88836 0.93077 0.90272 0.89728 0.77407 0.86330 0.86150 0.88183 0.86893 0.92000 0.85670 0.87651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.01 37.16 0.33 -0.68 16 2 C -0.13 -1.08 2.71 -90.48 -0.25 -1.32 16 3 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.07 0.49 5.95 37.21 0.22 0.72 16 5 O -0.38 -3.85 10.77 -35.23 -0.38 -4.23 16 6 C 0.06 0.60 6.68 37.21 0.25 0.84 16 7 C -0.17 -1.82 5.80 -26.59 -0.15 -1.97 16 8 C 0.15 1.59 2.29 -67.75 -0.16 1.44 16 9 H 0.09 1.23 7.59 -51.93 -0.39 0.83 16 10 N -0.73 -7.56 3.68 -55.07 -0.20 -7.76 16 11 C 0.54 7.55 6.74 -13.04 -0.09 7.46 16 12 O -0.51 -9.52 11.85 5.17 0.06 -9.46 16 13 C -0.27 -3.27 9.90 -37.51 -0.37 -3.64 16 14 C 0.03 0.40 9.80 -37.19 -0.36 0.03 16 15 C -0.19 -3.46 4.54 -105.02 -0.48 -3.93 16 16 C 0.01 0.26 6.60 -39.15 -0.26 0.00 16 17 C -0.20 -4.62 9.97 -39.47 -0.39 -5.01 16 18 C 0.17 4.36 6.66 -38.88 -0.26 4.10 16 19 O -0.17 -5.08 9.74 0.73 0.01 -5.08 16 20 C -0.39 -11.11 9.48 30.91 0.29 -10.82 16 21 H 0.09 2.48 5.18 -52.49 -0.27 2.21 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 23 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 24 Si 0.94 20.78 29.55 -169.99 -5.02 15.75 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 28 C -0.25 -5.71 9.14 -39.47 -0.36 -6.07 16 29 C -0.04 -0.80 9.78 -39.15 -0.38 -1.18 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.40 7.26 -51.93 -0.38 0.02 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.31 6.72 -51.93 -0.35 -0.04 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.47 7.75 -51.93 -0.40 0.07 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.39 3.06 6.64 -40.82 -0.27 2.79 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.10 1.78 7.02 -52.49 -0.37 1.41 16 43 H 0.11 2.51 8.06 -52.49 -0.42 2.09 16 44 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.13 2.83 5.62 -52.49 -0.29 2.54 16 46 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 372.44 15.07 5.61 5.61 Total: -1.00 -33.47 372.44 -8.19 -41.66 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.51 Total: 7.30 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -2.51 Total: -19.06 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.56 Total: -32.51 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.31 Total: -18.76 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.47 -8.19 -41.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493552826.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.014 kcal (2) G-P(sol) polarization free energy of solvation -33.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds