Wall clock time and date at job start Tue Mar 31 2020 17:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.57410 * 2 1 4 4 C 1.53096 * 109.52178 * 239.84190 * 2 1 3 5 5 O 1.42900 * 109.41522 * 182.48457 * 4 2 1 6 6 C 1.42899 * 114.09711 * 61.16155 * 5 4 2 7 7 C 1.53095 * 109.41377 * 298.83901 * 6 5 4 8 8 C 1.53173 * 109.52228 * 120.16026 * 2 1 3 9 9 H 1.09005 * 109.54617 * 296.74628 * 8 2 1 10 10 N 1.46495 * 109.54974 * 57.01643 * 8 2 1 11 11 C 1.34773 * 120.00670 * 204.55591 * 10 8 2 12 12 O 1.21726 * 119.99607 * 0.02562 * 11 10 8 13 13 C 1.46258 * 120.00386 * 179.97438 * 11 10 8 14 14 C 1.35013 * 120.00128 * 173.21341 * 13 11 10 15 15 C 1.46972 * 120.00011 * 348.68641 * 14 13 11 16 16 C 1.40022 * 120.10064 * 316.40357 * 15 14 13 17 17 C 1.37594 * 119.89590 * 179.69512 * 16 15 14 18 18 C 1.39179 * 120.10026 * 0.60226 * 17 16 15 19 19 O 1.35571 * 119.89850 * 179.69871 * 18 17 16 20 20 C 1.34783 * 117.00141 * 174.33460 * 19 18 17 21 21 H 1.08001 * 119.99627 * 5.06189 * 20 19 18 22 22 C 1.38721 * 120.00019 * 185.05818 * 20 19 18 23 23 N 1.31508 * 119.99940 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99835 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47213 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.47178 * 120.00156 * 24 22 20 27 27 H 1.48503 * 109.47048 * 239.99934 * 24 22 20 28 28 C 1.39175 * 120.20356 * 359.67055 * 18 17 16 29 29 C 1.37600 * 120.10206 * 0.02863 * 28 18 17 30 30 H 1.08997 * 109.46876 * 299.84226 * 1 2 3 31 31 H 1.08996 * 109.46886 * 59.84404 * 1 2 3 32 32 H 1.09003 * 109.47013 * 179.84360 * 1 2 3 33 33 H 1.09003 * 109.47930 * 62.50034 * 4 2 1 34 34 H 1.09002 * 109.49114 * 302.47665 * 4 2 1 35 35 H 1.09003 * 109.48179 * 178.86123 * 6 5 4 36 36 H 1.09001 * 109.49418 * 58.82805 * 6 5 4 37 37 H 1.09001 * 109.52200 * 297.70231 * 7 6 5 38 38 H 1.09005 * 109.52137 * 177.51464 * 7 6 5 39 39 H 0.97009 * 119.99426 * 24.55397 * 10 8 2 40 40 H 1.08002 * 119.99948 * 353.21972 * 13 11 10 41 41 H 1.07996 * 120.00281 * 168.68583 * 14 13 11 42 42 H 1.07999 * 120.04855 * 359.97438 * 16 15 14 43 43 H 1.07996 * 119.95164 * 180.27240 * 17 16 15 44 44 H 0.97001 * 119.99761 * 179.97438 * 23 22 20 45 45 H 1.07997 * 119.95041 * 179.97438 * 28 18 17 46 46 H 1.07995 * 120.04962 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7249 -1.2476 5 8 3.4694 -0.7743 -1.2164 6 6 4.0043 -1.4817 -0.0958 7 6 3.5716 -0.7872 1.1981 8 6 2.0419 -0.7253 1.2482 9 1 1.7280 -0.1825 2.1399 10 7 1.4974 -2.0849 1.2831 11 6 1.3799 -2.7340 2.4583 12 8 1.7259 -2.1904 3.4910 13 6 0.8358 -4.0911 2.4931 14 6 0.8445 -4.7926 3.6466 15 6 1.6151 -4.3033 4.7985 16 6 2.9095 -3.8017 4.6154 17 6 3.6249 -3.3389 5.6958 18 6 3.0684 -3.3803 6.9709 19 8 3.7792 -2.9288 8.0334 20 6 3.1438 -2.8864 9.2212 21 1 2.1420 -3.2796 9.3121 22 6 3.7765 -2.3376 10.3271 23 7 4.9961 -1.8583 10.2163 24 14 2.8960 -2.2794 11.9735 25 1 1.5446 -2.8789 11.8337 26 1 3.6752 -3.0456 12.9789 27 1 2.7685 -0.8679 12.4170 28 6 1.7844 -3.8832 7.1584 29 6 1.0592 -4.3426 6.0830 30 1 -0.3633 0.5114 0.8914 31 1 -0.3633 0.5162 -0.8886 32 1 -0.3633 -1.0277 -0.0028 33 1 1.7159 -0.1885 -2.1389 34 1 1.6431 -1.7393 -1.2679 35 1 5.0926 -1.4904 -0.1572 36 1 3.6317 -2.5060 -0.1007 37 1 3.9781 0.2239 1.2223 38 1 3.9417 -1.3501 2.0550 39 1 1.2213 -2.5179 0.4601 40 1 0.4270 -4.5322 1.5959 41 1 0.2852 -5.7133 3.7230 42 1 3.3440 -3.7741 3.6270 43 1 4.6216 -2.9478 5.5550 44 1 5.4383 -1.4743 10.9895 45 1 1.3567 -3.9138 8.1497 46 1 0.0630 -4.7330 6.2296 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493552826.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:54 Heat of formation + Delta-G solvation = -83.085125 kcal Electronic energy + Delta-G solvation = -28371.089805 eV Core-core repulsion = 24419.196530 eV Total energy + Delta-G solvation = -3951.893275 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.57644 -40.75275 -39.82210 -38.14668 -36.35099 -34.59760 -33.97651 -33.74704 -32.41469 -31.82503 -29.57759 -27.76628 -27.41857 -26.12969 -24.53736 -23.56140 -23.30246 -22.56408 -20.65902 -20.39964 -19.78122 -18.91786 -18.18177 -17.12137 -17.03753 -16.98951 -16.43652 -16.36232 -16.05952 -15.91867 -15.55082 -15.36929 -15.10807 -14.92315 -14.71126 -14.50960 -14.26820 -14.03342 -13.74448 -13.59302 -13.54595 -13.26073 -13.04253 -12.94181 -12.74060 -12.61451 -12.34951 -12.23479 -12.10136 -12.05510 -11.76190 -11.32354 -11.24107 -10.97081 -10.65490 -10.50016 -10.38298 -9.99510 -9.57470 -8.55602 -8.49308 -6.16691 -0.00243 0.71266 1.12594 1.32635 1.43892 1.51997 2.16075 2.33010 2.49514 2.86395 2.92393 3.20355 3.52102 3.56773 3.77996 3.82095 3.96353 3.99861 4.06406 4.14514 4.16705 4.20703 4.35355 4.44481 4.54399 4.59348 4.62793 4.71800 4.75893 4.76692 4.86981 4.92826 5.03013 5.04788 5.09298 5.11286 5.13145 5.25781 5.27055 5.32872 5.45953 5.58458 5.67809 5.72360 5.84651 6.01867 6.21757 6.24850 6.70213 6.94590 7.46543 7.76973 8.73986 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017545 B = 0.002665 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.487192 B =10503.818953 C =11103.304845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 H 0.088 0.912 4 C 0.062 3.938 5 O -0.396 6.396 6 C 0.069 3.931 7 C -0.166 4.166 8 C 0.150 3.850 9 H 0.060 0.940 10 N -0.708 5.708 11 C 0.528 3.472 12 O -0.565 6.565 13 C -0.231 4.231 14 C 0.005 3.995 15 C -0.160 4.160 16 C 0.016 3.984 17 C -0.221 4.221 18 C 0.127 3.873 19 O -0.232 6.232 20 C -0.415 4.415 21 H 0.102 0.898 22 C -0.025 4.025 23 N -0.921 5.921 24 Si 1.022 2.978 25 H -0.250 1.250 26 H -0.265 1.265 27 H -0.269 1.269 28 C -0.259 4.259 29 C -0.048 4.048 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.410 0.590 40 H 0.174 0.826 41 H 0.168 0.832 42 H 0.119 0.881 43 H 0.099 0.901 44 H 0.273 0.727 45 H 0.119 0.881 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.268 -2.914 -25.646 28.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 H 0.106 0.894 4 C -0.014 4.014 5 O -0.315 6.315 6 C -0.008 4.008 7 C -0.205 4.205 8 C 0.045 3.955 9 H 0.078 0.922 10 N -0.361 5.361 11 C 0.319 3.681 12 O -0.445 6.445 13 C -0.252 4.252 14 C -0.014 4.014 15 C -0.160 4.160 16 C -0.002 4.002 17 C -0.241 4.241 18 C 0.077 3.923 19 O -0.138 6.138 20 C -0.490 4.490 21 H 0.120 0.880 22 C -0.222 4.222 23 N -0.559 5.559 24 Si 0.841 3.159 25 H -0.174 1.174 26 H -0.190 1.190 27 H -0.194 1.194 28 C -0.278 4.278 29 C -0.066 4.066 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.133 0.867 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.248 0.752 40 H 0.191 0.809 41 H 0.186 0.814 42 H 0.137 0.863 43 H 0.117 0.883 44 H 0.082 0.918 45 H 0.136 0.864 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.521 -2.252 -24.940 27.565 hybrid contribution 0.111 0.330 1.190 1.240 sum -11.410 -1.921 -23.750 26.419 Atomic orbital electron populations 1.21706 0.92704 1.02905 1.02488 1.22011 0.97790 1.00590 0.94113 0.89393 1.22829 0.80157 1.00542 0.97869 1.87935 1.21484 1.76653 1.45423 1.22514 0.99494 0.94656 0.84147 1.22525 0.96555 1.02349 0.99063 1.20831 0.92387 0.83503 0.98813 0.92162 1.45894 1.65051 1.15913 1.09289 1.19092 0.77726 0.88167 0.83160 1.91016 1.50084 1.69515 1.33841 1.23064 1.08199 0.93338 1.00553 1.22567 0.91114 0.98014 0.89727 1.18874 0.95243 1.08004 0.93900 1.20640 0.93190 0.90859 0.95494 1.20175 1.01701 1.11403 0.90784 1.20004 0.91604 0.92441 0.88300 1.83874 1.39529 1.74458 1.15955 1.21922 1.01218 1.41728 0.84180 0.88044 1.26675 0.96892 0.95083 1.03529 1.70183 1.14087 1.39064 1.32588 0.84493 0.78288 0.78788 0.74368 1.17366 1.18992 1.19359 1.21084 0.95844 1.10365 1.00556 1.21180 0.98937 0.95688 0.90796 0.93585 0.90341 0.91531 0.86741 0.91601 0.88456 0.92140 0.90670 0.92567 0.75187 0.80914 0.81446 0.86300 0.88251 0.91768 0.86354 0.83498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.01 71.98 0.65 -0.90 16 2 C -0.13 -1.72 2.71 -10.70 -0.03 -1.75 16 3 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 4 C 0.06 0.70 5.95 72.01 0.43 1.13 16 5 O -0.40 -6.88 10.77 -148.98 -1.60 -8.49 16 6 C 0.07 1.19 6.68 72.01 0.48 1.67 16 7 C -0.17 -3.61 5.80 30.69 0.18 -3.43 16 8 C 0.15 3.03 2.29 45.11 0.10 3.13 16 9 H 0.06 1.65 7.59 -2.38 -0.02 1.63 16 10 N -0.71 -12.38 3.68 -446.35 -1.64 -14.03 16 11 C 0.53 13.14 6.74 86.33 0.58 13.72 16 12 O -0.56 -20.80 11.85 -4.43 -0.05 -20.85 16 13 C -0.23 -4.21 9.90 23.61 0.23 -3.98 16 14 C 0.01 0.11 9.80 23.82 0.23 0.34 16 15 C -0.16 -5.44 4.54 -20.12 -0.09 -5.53 16 16 C 0.02 0.65 6.60 22.55 0.15 0.79 16 17 C -0.22 -10.79 9.97 22.34 0.22 -10.57 16 18 C 0.13 6.95 6.66 22.72 0.15 7.10 16 19 O -0.23 -14.93 9.74 -20.29 -0.20 -15.13 16 20 C -0.41 -25.42 9.48 67.94 0.64 -24.78 16 21 H 0.10 5.73 5.18 -2.91 -0.02 5.72 16 22 C -0.02 -1.45 5.49 84.86 0.47 -0.98 16 23 N -0.92 -58.72 13.67 21.62 0.30 -58.42 16 24 Si 1.02 44.47 29.55 68.60 2.03 46.50 16 25 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 28 C -0.26 -12.25 9.14 22.34 0.20 -12.05 16 29 C -0.05 -1.79 9.78 22.55 0.22 -1.56 16 30 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.62 7.26 -2.39 -0.02 0.60 16 33 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 0.51 6.72 -2.39 -0.02 0.49 16 35 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.06 0.93 7.75 -2.39 -0.02 0.91 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.41 4.29 6.64 -92.70 -0.62 3.67 16 40 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 42 H 0.12 4.13 7.02 -2.91 -0.02 4.11 16 43 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 44 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 45 H 0.12 5.62 5.62 -2.91 -0.02 5.60 16 46 H 0.15 4.20 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -83.51 372.44 4.04 -79.47 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: 0.38 Total: 28.59 kcal Atomic # 6 Polarization: -42.46 SS G_CDS: 4.83 Total: -37.64 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -1.35 Total: -72.45 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -1.85 Total: -44.47 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -83.51 4.04 -79.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493552826.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.615 kcal (2) G-P(sol) polarization free energy of solvation -83.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds