Wall clock time and date at job start Tue Mar 31 2020 16:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47402 * 2 1 4 4 N 1.46502 * 109.47487 * 119.99832 * 2 1 3 5 5 C 1.34779 * 120.00114 * 125.08887 * 4 2 1 6 6 O 1.21714 * 120.00180 * 183.79337 * 5 4 2 7 7 C 1.46256 * 119.99784 * 3.79910 * 5 4 2 8 8 C 1.35020 * 119.99879 * 173.52312 * 7 5 4 9 9 C 1.46960 * 119.99950 * 348.46702 * 8 7 5 10 10 C 1.40029 * 120.09848 * 316.40014 * 9 8 7 11 11 C 1.37603 * 119.89565 * 179.70216 * 10 9 8 12 12 C 1.39184 * 120.09764 * 0.59718 * 11 10 9 13 13 O 1.35575 * 119.89249 * 179.69786 * 12 11 10 14 14 C 1.34783 * 116.99559 * 185.73939 * 13 12 11 15 15 H 1.08002 * 120.00070 * 5.43590 * 14 13 12 16 16 C 1.38718 * 119.99687 * 185.43087 * 14 13 12 17 17 N 1.31502 * 120.00200 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99728 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47178 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.46958 * 119.99990 * 18 16 14 21 21 H 1.48490 * 109.47223 * 240.00024 * 18 16 14 22 22 C 1.39170 * 120.20480 * 359.67710 * 12 11 10 23 23 C 1.37599 * 120.10568 * 0.02562 * 22 12 11 24 24 C 1.46494 * 119.99934 * 305.10167 * 4 2 1 25 25 C 1.53370 * 114.56546 * 231.47335 * 24 4 2 26 26 O 1.43352 * 88.49450 * 220.44171 * 25 24 4 27 27 C 1.43345 * 88.32519 * 28.12684 * 26 25 24 28 28 H 1.09003 * 109.46482 * 300.00096 * 1 2 3 29 29 H 1.08995 * 109.46752 * 59.99960 * 1 2 3 30 30 H 1.08993 * 109.46954 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47048 * 240.00221 * 2 1 3 32 32 H 1.08997 * 109.47255 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46932 * 300.00289 * 3 2 1 34 34 H 1.09006 * 109.47245 * 59.99689 * 3 2 1 35 35 H 1.07999 * 119.99877 * 353.52869 * 7 5 4 36 36 H 1.07996 * 119.99875 * 168.45992 * 8 7 5 37 37 H 1.07997 * 120.04997 * 0.02562 * 10 9 8 38 38 H 1.07994 * 119.95073 * 180.28144 * 11 10 9 39 39 H 0.96997 * 120.00108 * 180.02562 * 17 16 14 40 40 H 1.08000 * 119.95039 * 179.97438 * 22 12 11 41 41 H 1.07991 * 120.05757 * 180.02562 * 23 22 12 42 42 H 1.09001 * 113.56787 * 5.74120 * 24 4 2 43 43 H 1.09000 * 113.39559 * 105.51610 * 25 24 4 44 44 H 1.09004 * 113.38895 * 335.36204 * 25 24 4 45 45 H 1.08997 * 113.39306 * 86.74272 * 27 26 25 46 46 H 1.09001 * 113.39341 * 216.90705 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0185 -0.6906 1.1962 5 6 2.8757 -1.7235 1.0752 6 8 3.2277 -2.3413 2.0631 7 6 3.3831 -2.1021 -0.2433 8 6 4.3396 -3.0488 -0.3522 9 6 5.0502 -3.5167 0.8461 10 6 5.4933 -2.5964 1.8040 11 6 6.1528 -3.0396 2.9274 12 6 6.3905 -4.3993 3.1063 13 8 7.0461 -4.8309 4.2118 14 6 7.3499 -6.1428 4.2698 15 1 7.1508 -6.7812 3.4217 16 6 7.9183 -6.6728 5.4188 17 7 8.1604 -5.8955 6.4515 18 14 8.3400 -8.4909 5.4989 19 1 7.9723 -9.1414 4.2156 20 1 9.7975 -8.6510 5.7347 21 1 7.5862 -9.1253 6.6099 22 6 5.9570 -5.3171 2.1542 23 6 5.2914 -4.8837 1.0306 24 6 1.5749 -0.2585 2.5238 25 6 2.7099 0.0009 3.5222 26 8 1.9104 -0.6230 4.5353 27 6 1.2891 -1.4029 3.5055 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9564 0.8900 35 1 2.9928 -1.6243 -1.1297 36 1 4.5824 -3.4623 -1.3199 37 1 5.3131 -1.5409 1.6637 38 1 6.4909 -2.3310 3.6689 39 1 8.5582 -6.2661 7.2547 40 1 6.1440 -6.3712 2.2970 41 1 4.9549 -5.5966 0.2925 42 1 0.8093 0.5169 2.4966 43 1 2.8915 1.0600 3.7053 44 1 3.6228 -0.5484 3.2918 45 1 1.8306 -2.3191 3.2702 46 1 0.2260 -1.5745 3.6744 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493593260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:12 Heat of formation + Delta-G solvation = 1.575575 kcal Electronic energy + Delta-G solvation = -28920.287687 eV Core-core repulsion = 24972.065576 eV Total energy + Delta-G solvation = -3948.222112 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.37878 -39.28585 -38.60926 -36.99799 -36.13613 -33.15790 -32.15214 -31.82471 -30.13313 -29.21697 -27.62940 -27.55376 -26.07559 -25.43851 -23.62465 -22.04770 -21.88277 -21.41607 -20.32483 -18.19681 -17.84791 -17.38912 -16.75917 -16.60506 -16.04274 -15.89014 -14.99378 -14.62145 -14.58971 -14.36040 -14.29476 -14.05629 -13.68988 -13.54796 -13.39760 -13.20270 -12.95301 -12.78498 -12.59556 -12.47943 -12.35056 -12.17988 -11.69428 -11.62939 -11.49775 -11.45018 -11.13867 -11.03095 -11.00686 -10.65134 -10.55752 -10.39120 -9.93535 -9.48885 -9.17792 -8.99312 -8.71114 -8.66780 -7.90985 -6.87179 -6.46241 -4.01767 1.17185 2.40422 2.66396 2.86995 3.13657 3.14477 3.20023 3.44572 3.96817 4.08929 4.22583 4.39878 4.61341 4.69309 4.80099 4.83052 4.98250 5.12118 5.15999 5.23234 5.24869 5.31936 5.35457 5.44524 5.48929 5.54126 5.60771 5.71201 5.72937 5.80842 5.81741 5.85578 5.89614 6.06407 6.15539 6.23859 6.30007 6.40358 6.57571 6.65240 6.77200 7.02139 7.11898 7.33564 7.40927 7.47427 7.49989 7.90999 8.00212 8.39654 8.99328 9.71342 10.71580 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018748 B = 0.003030 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.129189 B = 9238.199486 C =10104.707680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.126 3.874 3 C -0.164 4.164 4 N -0.601 5.601 5 C 0.545 3.455 6 O -0.503 6.503 7 C -0.275 4.275 8 C 0.034 3.966 9 C -0.192 4.192 10 C 0.012 3.988 11 C -0.202 4.202 12 C 0.172 3.828 13 O -0.171 6.171 14 C -0.389 4.389 15 H 0.094 0.906 16 C 0.039 3.961 17 N -0.858 5.858 18 Si 0.942 3.058 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.250 4.250 23 C -0.040 4.040 24 C 0.080 3.920 25 C 0.022 3.978 26 O -0.365 6.365 27 C 0.008 3.992 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.270 0.730 40 H 0.126 0.874 41 H 0.105 0.895 42 H 0.119 0.881 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.124 0.876 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.681 12.169 -16.023 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.022 3.978 3 C -0.222 4.222 4 N -0.336 5.336 5 C 0.338 3.662 6 O -0.380 6.380 7 C -0.296 4.296 8 C 0.014 3.986 9 C -0.193 4.193 10 C -0.006 4.006 11 C -0.221 4.221 12 C 0.117 3.883 13 O -0.073 6.073 14 C -0.466 4.466 15 H 0.112 0.888 16 C -0.166 4.166 17 N -0.492 5.492 18 Si 0.766 3.234 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.269 4.269 23 C -0.058 4.058 24 C -0.024 4.024 25 C -0.056 4.056 26 O -0.283 6.283 27 C -0.070 4.070 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.118 0.882 38 H 0.131 0.869 39 H 0.080 0.920 40 H 0.143 0.857 41 H 0.123 0.877 42 H 0.137 0.863 43 H 0.096 0.904 44 H 0.114 0.886 45 H 0.141 0.859 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.328 11.943 -14.713 23.167 hybrid contribution -0.099 -0.730 -0.166 0.755 sum -13.427 11.213 -14.879 22.965 Atomic orbital electron populations 1.22186 0.94951 1.02651 1.02374 1.21276 0.94343 0.93532 0.88641 1.22201 1.02014 0.95721 1.02264 1.47949 1.46834 1.33204 1.05628 1.18539 0.78323 0.79009 0.90342 1.90893 1.56719 1.51515 1.38843 1.22679 1.04733 1.06274 0.95889 1.22366 0.89100 0.89744 0.97345 1.18272 1.09597 0.93612 0.97824 1.20402 0.91907 0.97019 0.91315 1.19999 1.08951 0.93037 1.00155 1.19540 0.88990 0.92742 0.87003 1.83929 1.62150 1.27338 1.33914 1.21438 1.41228 0.82197 1.01694 0.88848 1.25338 0.96622 1.00360 0.94272 1.70029 1.39476 1.35695 1.03970 0.85635 0.78457 0.80434 0.78842 1.19018 1.20095 1.20092 1.20953 1.08537 1.00047 0.97388 1.20735 0.95152 0.93792 0.96170 1.23980 0.97942 0.98547 0.81969 1.24136 0.96731 0.98922 0.85820 1.89856 1.55627 1.56919 1.25885 1.24617 0.99319 0.98275 0.84755 0.92316 0.91397 0.92019 0.88287 0.91963 0.91547 0.92378 0.85857 0.86101 0.88226 0.86879 0.91952 0.85678 0.87658 0.86344 0.90375 0.88621 0.85895 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.11 37.16 0.34 -0.66 16 2 C 0.13 0.92 3.13 -67.93 -0.21 0.71 16 3 C -0.16 -1.03 9.27 37.16 0.34 -0.68 16 4 N -0.60 -6.41 2.66 -161.25 -0.43 -6.84 16 5 C 0.54 7.45 6.14 -13.04 -0.08 7.37 16 6 O -0.50 -8.89 7.66 5.18 0.04 -8.85 16 7 C -0.27 -3.23 9.21 -37.51 -0.35 -3.57 16 8 C 0.03 0.45 9.80 -37.19 -0.36 0.08 16 9 C -0.19 -3.40 4.53 -105.02 -0.48 -3.87 16 10 C 0.01 0.23 6.60 -39.14 -0.26 -0.02 16 11 C -0.20 -4.57 9.97 -39.46 -0.39 -4.96 16 12 C 0.17 4.35 6.66 -38.88 -0.26 4.09 16 13 O -0.17 -5.04 9.74 0.72 0.01 -5.03 16 14 C -0.39 -11.09 9.44 30.91 0.29 -10.79 16 15 H 0.09 2.46 5.27 -52.49 -0.28 2.19 16 16 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 17 N -0.86 -25.55 13.67 55.48 0.76 -24.79 16 18 Si 0.94 20.77 29.55 -169.99 -5.02 15.75 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 C -0.25 -5.64 9.11 -39.47 -0.36 -6.00 16 23 C -0.04 -0.76 9.79 -39.14 -0.38 -1.14 16 24 C 0.08 0.91 3.95 -67.50 -0.27 0.64 16 25 C 0.02 0.30 8.20 24.60 0.20 0.51 16 26 O -0.37 -6.04 12.74 -35.23 -0.45 -6.49 16 27 C 0.01 0.11 8.13 24.65 0.20 0.31 16 28 H 0.06 0.36 6.77 -51.93 -0.35 0.01 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.10 0.65 5.22 -51.93 -0.27 0.38 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.37 7.63 -51.93 -0.40 -0.02 16 35 H 0.12 1.03 5.81 -52.49 -0.30 0.73 16 36 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 37 H 0.10 1.73 7.03 -52.49 -0.37 1.36 16 38 H 0.11 2.52 8.06 -52.49 -0.42 2.10 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.13 2.82 5.69 -52.49 -0.30 2.52 16 41 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.12 1.05 6.60 -51.93 -0.34 0.71 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.10 1.55 6.40 -51.93 -0.33 1.22 16 45 H 0.12 2.13 5.18 -51.93 -0.27 1.86 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 368.80 15.07 5.56 5.56 Total: -1.00 -33.34 368.80 -7.81 -41.15 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.15 Total: 6.56 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -2.12 Total: -17.02 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.33 Total: -31.63 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.40 Total: -20.37 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.34 -7.81 -41.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493593260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.725 kcal (2) G-P(sol) polarization free energy of solvation -33.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds