Wall clock time and date at job start Tue Mar 31 2020 16:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47402 * 2 1 4 4 N 1.46502 * 109.47487 * 119.99832 * 2 1 3 5 5 C 1.34779 * 120.00114 * 125.08887 * 4 2 1 6 6 O 1.21714 * 120.00180 * 183.79337 * 5 4 2 7 7 C 1.46256 * 119.99784 * 3.79910 * 5 4 2 8 8 C 1.35020 * 119.99879 * 173.52312 * 7 5 4 9 9 C 1.46960 * 119.99950 * 348.46702 * 8 7 5 10 10 C 1.40029 * 120.09848 * 316.40014 * 9 8 7 11 11 C 1.37603 * 119.89565 * 179.70216 * 10 9 8 12 12 C 1.39184 * 120.09764 * 0.59718 * 11 10 9 13 13 O 1.35575 * 119.89249 * 179.69786 * 12 11 10 14 14 C 1.34783 * 116.99559 * 185.73939 * 13 12 11 15 15 H 1.08002 * 120.00070 * 5.43590 * 14 13 12 16 16 C 1.38718 * 119.99687 * 185.43087 * 14 13 12 17 17 N 1.31502 * 120.00200 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99728 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47178 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.46958 * 119.99990 * 18 16 14 21 21 H 1.48490 * 109.47223 * 240.00024 * 18 16 14 22 22 C 1.39170 * 120.20480 * 359.67710 * 12 11 10 23 23 C 1.37599 * 120.10568 * 0.02562 * 22 12 11 24 24 C 1.46494 * 119.99934 * 305.10167 * 4 2 1 25 25 C 1.53370 * 114.56546 * 231.47335 * 24 4 2 26 26 O 1.43352 * 88.49450 * 220.44171 * 25 24 4 27 27 C 1.43345 * 88.32519 * 28.12684 * 26 25 24 28 28 H 1.09003 * 109.46482 * 300.00096 * 1 2 3 29 29 H 1.08995 * 109.46752 * 59.99960 * 1 2 3 30 30 H 1.08993 * 109.46954 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47048 * 240.00221 * 2 1 3 32 32 H 1.08997 * 109.47255 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46932 * 300.00289 * 3 2 1 34 34 H 1.09006 * 109.47245 * 59.99689 * 3 2 1 35 35 H 1.07999 * 119.99877 * 353.52869 * 7 5 4 36 36 H 1.07996 * 119.99875 * 168.45992 * 8 7 5 37 37 H 1.07997 * 120.04997 * 0.02562 * 10 9 8 38 38 H 1.07994 * 119.95073 * 180.28144 * 11 10 9 39 39 H 0.96997 * 120.00108 * 180.02562 * 17 16 14 40 40 H 1.08000 * 119.95039 * 179.97438 * 22 12 11 41 41 H 1.07991 * 120.05757 * 180.02562 * 23 22 12 42 42 H 1.09001 * 113.56787 * 5.74120 * 24 4 2 43 43 H 1.09000 * 113.39559 * 105.51610 * 25 24 4 44 44 H 1.09004 * 113.38895 * 335.36204 * 25 24 4 45 45 H 1.08997 * 113.39306 * 86.74272 * 27 26 25 46 46 H 1.09001 * 113.39341 * 216.90705 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0185 -0.6906 1.1962 5 6 2.8757 -1.7235 1.0752 6 8 3.2277 -2.3413 2.0631 7 6 3.3831 -2.1021 -0.2433 8 6 4.3396 -3.0488 -0.3522 9 6 5.0502 -3.5167 0.8461 10 6 5.4933 -2.5964 1.8040 11 6 6.1528 -3.0396 2.9274 12 6 6.3905 -4.3993 3.1063 13 8 7.0461 -4.8309 4.2118 14 6 7.3499 -6.1428 4.2698 15 1 7.1508 -6.7812 3.4217 16 6 7.9183 -6.6728 5.4188 17 7 8.1604 -5.8955 6.4515 18 14 8.3400 -8.4909 5.4989 19 1 7.9723 -9.1414 4.2156 20 1 9.7975 -8.6510 5.7347 21 1 7.5862 -9.1253 6.6099 22 6 5.9570 -5.3171 2.1542 23 6 5.2914 -4.8837 1.0306 24 6 1.5749 -0.2585 2.5238 25 6 2.7099 0.0009 3.5222 26 8 1.9104 -0.6230 4.5353 27 6 1.2891 -1.4029 3.5055 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9564 0.8900 35 1 2.9928 -1.6243 -1.1297 36 1 4.5824 -3.4623 -1.3199 37 1 5.3131 -1.5409 1.6637 38 1 6.4909 -2.3310 3.6689 39 1 8.5582 -6.2661 7.2547 40 1 6.1440 -6.3712 2.2970 41 1 4.9549 -5.5966 0.2925 42 1 0.8093 0.5169 2.4966 43 1 2.8915 1.0600 3.7053 44 1 3.6228 -0.5484 3.2918 45 1 1.8306 -2.3191 3.2702 46 1 0.2260 -1.5745 3.6744 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493593260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:11 Heat of formation + Delta-G solvation = -20.839754 kcal Electronic energy + Delta-G solvation = -28921.259689 eV Core-core repulsion = 24972.065576 eV Total energy + Delta-G solvation = -3949.194113 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.46389 -40.83095 -40.02768 -38.33513 -37.35842 -34.64777 -33.95671 -32.64547 -31.81657 -30.48378 -29.01752 -28.03139 -27.41425 -27.17857 -24.87539 -23.57648 -22.93961 -22.61640 -21.58940 -19.92453 -19.25519 -18.60136 -18.27179 -17.59483 -17.17424 -17.01336 -16.43828 -16.32701 -16.07837 -15.67966 -15.54146 -15.10467 -15.07511 -14.90908 -14.58841 -14.41025 -14.16670 -14.08681 -13.82032 -13.55893 -13.53935 -13.22835 -13.03497 -12.92822 -12.66592 -12.39943 -12.35377 -12.28110 -12.25065 -12.10149 -11.93291 -11.66427 -11.27749 -11.09563 -10.87324 -10.38658 -10.15793 -9.77186 -9.42991 -8.53231 -8.49868 -6.16724 -0.02653 0.71552 1.10998 1.32472 1.43774 1.52057 1.97285 2.16076 2.35634 2.86257 3.02721 3.20231 3.22622 3.50290 3.65153 3.84672 4.02922 4.04929 4.13166 4.15746 4.17405 4.27248 4.35547 4.47100 4.53981 4.57513 4.63117 4.65016 4.77669 4.82309 4.84205 4.97417 5.02513 5.03524 5.03885 5.09960 5.12603 5.24861 5.27698 5.35884 5.44465 5.44856 5.66852 5.70276 5.73123 5.84403 6.01717 6.25249 6.51267 6.94515 7.34109 7.77483 8.74174 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018748 B = 0.003030 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.129189 B = 9238.199486 C =10104.707680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.120 3.880 3 C -0.162 4.162 4 N -0.591 5.591 5 C 0.529 3.471 6 O -0.551 6.551 7 C -0.237 4.237 8 C 0.012 3.988 9 C -0.159 4.159 10 C 0.018 3.982 11 C -0.221 4.221 12 C 0.128 3.872 13 O -0.233 6.233 14 C -0.413 4.413 15 H 0.103 0.897 16 C -0.026 4.026 17 N -0.922 5.922 18 Si 1.022 2.978 19 H -0.249 1.249 20 H -0.265 1.265 21 H -0.269 1.269 22 C -0.259 4.259 23 C -0.046 4.046 24 C 0.108 3.892 25 C 0.014 3.986 26 O -0.397 6.397 27 C -0.002 4.002 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.116 0.884 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.174 0.826 36 H 0.169 0.831 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.273 0.727 40 H 0.118 0.882 41 H 0.148 0.852 42 H 0.154 0.846 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.669 13.454 -21.187 30.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.018 3.982 3 C -0.220 4.220 4 N -0.325 5.325 5 C 0.322 3.678 6 O -0.431 6.431 7 C -0.257 4.257 8 C -0.008 4.008 9 C -0.159 4.159 10 C 0.000 4.000 11 C -0.241 4.241 12 C 0.077 3.923 13 O -0.139 6.139 14 C -0.489 4.489 15 H 0.120 0.880 16 C -0.223 4.223 17 N -0.560 5.560 18 Si 0.841 3.159 19 H -0.172 1.172 20 H -0.190 1.190 21 H -0.194 1.194 22 C -0.278 4.278 23 C -0.064 4.064 24 C 0.003 3.997 25 C -0.064 4.064 26 O -0.316 6.316 27 C -0.079 4.079 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.134 0.866 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.191 0.809 36 H 0.187 0.813 37 H 0.136 0.864 38 H 0.114 0.886 39 H 0.082 0.918 40 H 0.136 0.864 41 H 0.166 0.834 42 H 0.172 0.828 43 H 0.120 0.880 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.371 13.289 -19.972 29.043 hybrid contribution 0.461 -0.735 1.091 1.394 sum -15.910 12.554 -18.881 27.699 Atomic orbital electron populations 1.22175 0.93633 1.02473 1.03606 1.21628 0.95370 0.93978 0.87213 1.22191 1.01374 0.94963 1.03437 1.48046 1.45504 1.32267 1.06634 1.19147 0.78615 0.79319 0.90706 1.90928 1.58267 1.53349 1.40570 1.23149 1.02722 1.03500 0.96326 1.22590 0.90180 0.91042 0.96949 1.18847 1.06120 0.92785 0.98183 1.20614 0.90608 0.98400 0.90413 1.20158 1.10181 0.92154 1.01578 1.20024 0.90794 0.94185 0.87313 1.83893 1.65653 1.27939 1.36443 1.21914 1.41986 0.82477 1.02542 0.87981 1.26696 0.96221 1.05927 0.93441 1.70186 1.42353 1.38370 1.05080 0.84489 0.78492 0.73412 0.79511 1.17208 1.19033 1.19409 1.21077 1.09175 0.99326 0.98207 1.21174 0.94247 0.95379 0.95585 1.23828 0.96965 0.97412 0.81507 1.24175 0.96244 0.99439 0.86532 1.89823 1.56373 1.57591 1.27769 1.24579 0.99638 0.97982 0.85719 0.92308 0.89060 0.92894 0.86646 0.92955 0.89182 0.92527 0.80896 0.81330 0.86364 0.88556 0.91789 0.86440 0.83445 0.82849 0.88041 0.91824 0.89272 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.11 71.98 0.66 -0.46 16 2 C 0.12 1.10 3.13 44.99 0.14 1.24 16 3 C -0.16 -1.20 9.27 71.98 0.67 -0.54 16 4 N -0.59 -10.51 2.66 -784.19 -2.09 -12.60 16 5 C 0.53 12.88 6.14 86.33 0.53 13.41 16 6 O -0.55 -19.29 7.66 -4.39 -0.03 -19.32 16 7 C -0.24 -4.21 9.21 23.61 0.22 -4.00 16 8 C 0.01 0.24 9.80 23.82 0.23 0.48 16 9 C -0.16 -5.28 4.53 -20.12 -0.09 -5.37 16 10 C 0.02 0.69 6.60 22.55 0.15 0.84 16 11 C -0.22 -10.81 9.97 22.35 0.22 -10.59 16 12 C 0.13 6.99 6.66 22.72 0.15 7.14 16 13 O -0.23 -15.12 9.74 -20.34 -0.20 -15.32 16 14 C -0.41 -25.44 9.44 67.93 0.64 -24.80 16 15 H 0.10 5.77 5.27 -2.91 -0.02 5.75 16 16 C -0.03 -1.53 5.49 84.86 0.47 -1.06 16 17 N -0.92 -59.37 13.67 21.62 0.30 -59.08 16 18 Si 1.02 44.72 29.55 68.60 2.03 46.75 16 19 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 22 C -0.26 -12.17 9.11 22.34 0.20 -11.97 16 23 C -0.05 -1.68 9.79 22.55 0.22 -1.46 16 24 C 0.11 2.19 3.95 45.27 0.18 2.36 16 25 C 0.01 0.38 8.20 63.85 0.52 0.91 16 26 O -0.40 -13.47 12.74 -148.98 -1.90 -15.37 16 27 C 0.00 -0.06 8.13 63.88 0.52 0.46 16 28 H 0.06 0.43 6.77 -2.39 -0.02 0.41 16 29 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.12 0.69 5.22 -2.39 -0.01 0.68 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 34 H 0.06 0.46 7.63 -2.38 -0.02 0.45 16 35 H 0.17 1.46 5.81 -2.91 -0.02 1.45 16 36 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.12 4.06 7.03 -2.91 -0.02 4.04 16 38 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 39 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 40 H 0.12 5.58 5.69 -2.91 -0.02 5.56 16 41 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 42 H 0.15 2.11 6.60 -2.39 -0.02 2.09 16 43 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.06 2.16 6.40 -2.39 -0.02 2.14 16 45 H 0.09 3.21 5.18 -2.39 -0.01 3.20 16 46 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -85.36 368.80 4.74 -80.62 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 1.00 Total: 27.69 kcal Atomic # 6 Polarization: -39.01 SS G_CDS: 5.63 Total: -33.38 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -1.79 Total: -71.67 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -2.13 Total: -50.01 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -85.36 4.74 -80.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493593260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.785 kcal (2) G-P(sol) polarization free energy of solvation -85.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds