Wall clock time and date at job start Tue Mar 31 2020 17:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35948 * 117.00192 * 2 1 4 4 C 1.38080 * 119.99901 * 0.23731 * 3 2 1 5 5 C 1.39985 * 119.83680 * 180.23579 * 4 3 2 6 6 C 1.46963 * 120.07750 * 179.76404 * 5 4 3 7 7 C 1.35022 * 120.00383 * 316.37082 * 6 5 4 8 8 C 1.46260 * 119.99847 * 348.67395 * 7 6 5 9 9 O 1.21723 * 119.99969 * 353.21991 * 8 7 6 10 10 N 1.34779 * 119.99993 * 173.21385 * 8 7 6 11 11 C 1.47062 * 136.05663 * 0.02562 * 10 8 7 12 12 C 1.53494 * 87.98335 * 207.08440 * 11 10 8 13 13 H 1.09003 * 114.20742 * 220.34996 * 12 11 10 14 14 C 1.53001 * 114.20721 * 87.52306 * 12 11 10 15 15 C 1.47066 * 136.05485 * 179.97438 * 10 8 7 16 16 H 1.09004 * 113.46546 * 38.13939 * 15 10 8 17 17 C 1.52996 * 113.46841 * 267.69774 * 15 10 8 18 18 C 1.40025 * 119.83958 * 359.48683 * 5 4 3 19 19 C 1.37643 * 120.00338 * 0.27837 * 18 5 4 20 20 C 1.39059 * 120.16003 * 359.97438 * 19 18 5 21 21 O 1.35622 * 119.91856 * 179.97438 * 20 19 18 22 22 C 1.34764 * 117.00073 * 354.29666 * 21 20 19 23 23 H 1.08000 * 119.99839 * 5.06516 * 22 21 20 24 24 C 1.38700 * 119.99890 * 185.06422 * 22 21 20 25 25 N 1.31515 * 120.00055 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 120.00161 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47257 * 89.99555 * 26 24 22 28 28 H 1.48502 * 109.47024 * 210.00225 * 26 24 22 29 29 H 1.48508 * 109.46912 * 329.99937 * 26 24 22 30 30 H 1.08993 * 109.47218 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46811 * 299.99577 * 1 2 3 32 32 H 1.08994 * 109.47336 * 59.99484 * 1 2 3 33 33 H 1.07997 * 120.08340 * 359.97438 * 4 3 2 34 34 H 1.08006 * 119.99850 * 136.36290 * 6 5 4 35 35 H 1.07996 * 120.00526 * 168.68235 * 7 6 5 36 36 H 1.08999 * 113.46877 * 321.86671 * 11 10 8 37 37 H 1.09004 * 113.46264 * 92.30861 * 11 10 8 38 38 H 1.09003 * 109.47059 * 79.50086 * 14 12 11 39 39 H 1.09003 * 109.46741 * 199.50536 * 14 12 11 40 40 H 1.08997 * 109.46842 * 319.49978 * 14 12 11 41 41 H 1.09002 * 109.47432 * 79.50240 * 17 15 10 42 42 H 1.09001 * 109.47348 * 199.50871 * 17 15 10 43 43 H 1.09008 * 109.46830 * 319.50711 * 17 15 10 44 44 H 1.07997 * 119.99613 * 180.25704 * 18 5 4 45 45 H 1.07998 * 119.92083 * 179.97438 * 19 18 5 46 46 H 0.97001 * 120.00082 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2943 2.3693 0.0050 5 6 1.9333 3.6148 -0.0001 6 6 1.1381 4.8507 -0.0001 7 6 0.0582 4.9587 -0.8033 8 6 -0.1805 3.9610 -1.8458 9 8 0.6548 3.1048 -2.0716 10 7 -1.3253 3.9895 -2.5565 11 6 -2.5328 4.8285 -2.5858 12 6 -3.2990 3.6122 -3.1239 13 1 -4.0190 3.8484 -3.9075 14 6 -3.8627 2.6947 -2.0370 15 6 -1.9164 3.1958 -3.6444 16 1 -1.7233 2.1266 -3.5560 17 6 -1.6001 3.7418 -5.0382 18 6 3.3321 3.6802 0.0008 19 6 4.0753 2.5216 0.0008 20 6 3.4405 1.2844 0.0004 21 8 4.1776 0.1460 -0.0001 22 6 5.5130 0.2818 -0.1196 23 1 5.9571 1.2662 -0.1270 24 6 6.3171 -0.8427 -0.2331 25 7 7.6203 -0.7101 -0.3502 26 14 5.5488 -2.5454 -0.2210 27 1 5.2160 -2.9482 -1.6110 28 1 6.5093 -3.5177 0.3598 29 1 4.3101 -2.5237 0.5980 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 0.2157 2.3144 0.0084 34 1 1.4174 5.6725 0.6426 35 1 -0.6292 5.7818 -0.6762 36 1 -2.8637 5.1476 -1.5975 37 1 -2.4716 5.6523 -3.2970 38 1 -4.7816 3.1250 -1.6388 39 1 -4.0754 1.7144 -2.4634 40 1 -3.1325 2.5911 -1.2344 41 1 -0.5938 3.4389 -5.3274 42 1 -2.3191 3.3456 -5.7553 43 1 -1.6622 4.8300 -5.0248 44 1 3.8277 4.6397 0.0011 45 1 5.1540 2.5736 0.0010 46 1 8.1826 -1.4966 -0.4292 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493612311.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:14 Heat of formation + Delta-G solvation = 0.241202 kcal Electronic energy + Delta-G solvation = -28856.946360 eV Core-core repulsion = 24908.666385 eV Total energy + Delta-G solvation = -3948.279974 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.86409 -39.68412 -38.24271 -37.57593 -36.06516 -32.97276 -32.27114 -31.45892 -30.49093 -29.45579 -28.55644 -27.03550 -26.55465 -25.34562 -24.25219 -22.68771 -21.55298 -21.18169 -19.70043 -18.25073 -17.84132 -17.60490 -16.99387 -16.34026 -16.06138 -15.60369 -15.20290 -15.12633 -14.49118 -14.40582 -14.07930 -13.79035 -13.66184 -13.54355 -13.43185 -13.26380 -13.15334 -12.79182 -12.57158 -12.41867 -12.21437 -12.05919 -11.96556 -11.75031 -11.57334 -11.42458 -11.31828 -11.02663 -10.78154 -10.63468 -10.48940 -10.41509 -10.15681 -9.49181 -9.43361 -9.22299 -8.71832 -8.69518 -7.54505 -6.85323 -6.38357 -3.98938 1.12734 2.31748 2.55046 2.83303 3.28865 3.34066 3.52276 3.55292 3.91578 4.02222 4.32002 4.38517 4.56394 4.67180 4.83708 4.84445 4.94220 5.02601 5.05457 5.13355 5.16035 5.19809 5.34868 5.43780 5.48065 5.49135 5.54060 5.58145 5.65879 5.66975 5.72020 5.76906 5.83014 5.87140 5.89114 6.05089 6.16464 6.32837 6.42974 6.50167 6.64136 7.01160 7.13392 7.34132 7.58693 7.72062 7.81709 8.00559 8.23804 8.45685 8.97184 9.62638 10.68608 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016532 B = 0.003292 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.307213 B = 8504.388508 C = 9111.432091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.310 6.310 3 C 0.044 3.956 4 C -0.078 4.078 5 C -0.148 4.148 6 C 0.022 3.978 7 C -0.253 4.253 8 C 0.566 3.434 9 O -0.508 6.508 10 N -0.643 5.643 11 C 0.103 3.897 12 C -0.127 4.127 13 H 0.095 0.905 14 C -0.132 4.132 15 C 0.130 3.870 16 H 0.084 0.916 17 C -0.155 4.155 18 C -0.067 4.067 19 C -0.215 4.215 20 C 0.159 3.841 21 O -0.200 6.200 22 C -0.385 4.385 23 H 0.108 0.892 24 C 0.065 3.935 25 N -0.877 5.877 26 Si 0.903 3.097 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.255 1.255 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.111 0.889 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.112 0.888 45 H 0.140 0.860 46 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.841 11.870 -3.510 26.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.224 6.224 3 C 0.000 4.000 4 C -0.098 4.098 5 C -0.149 4.149 6 C 0.002 3.998 7 C -0.274 4.274 8 C 0.359 3.641 9 O -0.384 6.384 10 N -0.381 5.381 11 C -0.021 4.021 12 C -0.146 4.146 13 H 0.113 0.887 14 C -0.189 4.189 15 C 0.026 3.974 16 H 0.102 0.898 17 C -0.213 4.213 18 C -0.086 4.086 19 C -0.235 4.235 20 C 0.105 3.895 21 O -0.104 6.104 22 C -0.461 4.461 23 H 0.125 0.875 24 C -0.139 4.139 25 N -0.514 5.514 26 Si 0.729 3.271 27 H -0.198 1.198 28 H -0.208 1.208 29 H -0.179 1.179 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.129 0.871 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.130 0.870 45 H 0.157 0.843 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.888 10.827 -3.492 25.559 hybrid contribution -0.351 -0.203 -0.230 0.466 sum -23.238 10.623 -3.722 25.821 Atomic orbital electron populations 1.22824 0.80487 1.02516 1.00259 1.86139 1.19394 1.26702 1.90198 1.17946 0.89166 0.84455 1.08468 1.20519 0.97601 0.90602 1.01061 1.18119 0.92825 0.91495 1.12510 1.22345 0.90694 0.94771 0.91977 1.22565 1.02266 1.02194 1.00419 1.18103 0.78898 0.84938 0.82168 1.91022 1.42011 1.37183 1.68185 1.49795 1.17966 1.33637 1.36699 1.23000 0.83048 0.94628 1.01414 1.22877 0.95699 0.96780 0.99200 0.88688 1.21505 1.00709 0.98846 0.97823 1.22448 0.89495 0.97440 0.87975 0.89779 1.21965 1.02749 1.01416 0.95157 1.20737 0.92097 0.97317 0.98433 1.20856 1.00878 0.90647 1.11091 1.18550 0.87645 0.86964 0.96330 1.83589 1.20225 1.27474 1.79073 1.20857 0.77416 0.96989 1.50791 0.87465 1.24463 0.94523 0.99469 0.95447 1.69632 1.03118 1.31603 1.47033 0.86191 0.79758 0.81716 0.79465 1.19833 1.20848 1.17874 0.89330 0.93913 0.93504 0.87117 0.85584 0.86219 0.90618 0.90133 0.92011 0.91971 0.92229 0.91667 0.91088 0.92122 0.87022 0.84292 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.81 101.05 0.99 1.56 16 2 O -0.31 -6.97 10.28 -34.19 -0.35 -7.33 16 3 C 0.04 1.03 6.70 -39.13 -0.26 0.76 16 4 C -0.08 -1.56 5.59 -38.98 -0.22 -1.78 16 5 C -0.15 -2.75 4.54 -105.04 -0.48 -3.23 16 6 C 0.02 0.31 9.80 -37.19 -0.36 -0.06 16 7 C -0.25 -3.29 9.74 -37.50 -0.37 -3.66 16 8 C 0.57 8.67 7.02 -13.04 -0.09 8.58 16 9 O -0.51 -10.19 12.96 5.17 0.07 -10.12 16 10 N -0.64 -7.51 3.27 -179.11 -0.59 -8.09 16 11 C 0.10 0.76 7.52 -8.51 -0.06 0.69 16 12 C -0.13 -0.85 4.37 -90.11 -0.39 -1.24 16 13 H 0.09 0.45 8.11 -51.93 -0.42 0.03 16 14 C -0.13 -0.89 9.69 37.16 0.36 -0.53 16 15 C 0.13 1.29 4.53 -72.39 -0.33 0.96 16 16 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 17 C -0.15 -1.33 9.79 37.16 0.36 -0.97 16 18 C -0.07 -1.32 9.78 -39.13 -0.38 -1.70 16 19 C -0.22 -4.98 9.14 -39.49 -0.36 -5.34 16 20 C 0.16 4.06 6.67 -38.76 -0.26 3.80 16 21 O -0.20 -5.71 8.35 -13.98 -0.12 -5.83 16 22 C -0.39 -11.36 9.94 30.90 0.31 -11.06 16 23 H 0.11 3.18 5.42 -52.49 -0.28 2.90 16 24 C 0.06 1.89 5.49 -17.52 -0.10 1.79 16 25 N -0.88 -25.96 13.96 55.48 0.77 -25.19 16 26 Si 0.90 22.90 28.62 -169.99 -4.86 18.03 16 27 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.25 -6.60 7.11 56.52 0.40 -6.20 16 30 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 32 H 0.05 0.75 7.67 -51.93 -0.40 0.35 16 33 H 0.11 2.01 5.25 -52.49 -0.28 1.74 16 34 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 35 H 0.12 1.16 7.98 -52.49 -0.42 0.74 16 36 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 37 H 0.08 0.49 7.30 -51.93 -0.38 0.11 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.52 7.94 -51.93 -0.41 0.11 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.47 7.04 -51.92 -0.37 0.11 16 44 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 45 H 0.14 3.28 5.62 -52.49 -0.29 2.98 16 46 H 0.28 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 380.21 15.07 5.73 5.73 Total: -1.00 -35.21 380.21 -7.57 -42.78 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.58 Total: 1.44 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -1.64 Total: -11.42 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.19 Total: -33.28 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.40 Total: -23.28 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.86 Total: 18.03 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.21 -7.57 -42.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493612311.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.017 kcal (2) G-P(sol) polarization free energy of solvation -35.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds