Wall clock time and date at job start Tue Mar 31 2020 17:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35948 * 117.00192 * 2 1 4 4 C 1.38080 * 119.99901 * 0.23731 * 3 2 1 5 5 C 1.39985 * 119.83680 * 180.23579 * 4 3 2 6 6 C 1.46963 * 120.07750 * 179.76404 * 5 4 3 7 7 C 1.35022 * 120.00383 * 316.37082 * 6 5 4 8 8 C 1.46260 * 119.99847 * 348.67395 * 7 6 5 9 9 O 1.21723 * 119.99969 * 353.21991 * 8 7 6 10 10 N 1.34779 * 119.99993 * 173.21385 * 8 7 6 11 11 C 1.47062 * 136.05663 * 0.02562 * 10 8 7 12 12 C 1.53494 * 87.98335 * 207.08440 * 11 10 8 13 13 H 1.09003 * 114.20742 * 220.34996 * 12 11 10 14 14 C 1.53001 * 114.20721 * 87.52306 * 12 11 10 15 15 C 1.47066 * 136.05485 * 179.97438 * 10 8 7 16 16 H 1.09004 * 113.46546 * 38.13939 * 15 10 8 17 17 C 1.52996 * 113.46841 * 267.69774 * 15 10 8 18 18 C 1.40025 * 119.83958 * 359.48683 * 5 4 3 19 19 C 1.37643 * 120.00338 * 0.27837 * 18 5 4 20 20 C 1.39059 * 120.16003 * 359.97438 * 19 18 5 21 21 O 1.35622 * 119.91856 * 179.97438 * 20 19 18 22 22 C 1.34764 * 117.00073 * 354.29666 * 21 20 19 23 23 H 1.08000 * 119.99839 * 5.06516 * 22 21 20 24 24 C 1.38700 * 119.99890 * 185.06422 * 22 21 20 25 25 N 1.31515 * 120.00055 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 120.00161 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47257 * 89.99555 * 26 24 22 28 28 H 1.48502 * 109.47024 * 210.00225 * 26 24 22 29 29 H 1.48508 * 109.46912 * 329.99937 * 26 24 22 30 30 H 1.08993 * 109.47218 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46811 * 299.99577 * 1 2 3 32 32 H 1.08994 * 109.47336 * 59.99484 * 1 2 3 33 33 H 1.07997 * 120.08340 * 359.97438 * 4 3 2 34 34 H 1.08006 * 119.99850 * 136.36290 * 6 5 4 35 35 H 1.07996 * 120.00526 * 168.68235 * 7 6 5 36 36 H 1.08999 * 113.46877 * 321.86671 * 11 10 8 37 37 H 1.09004 * 113.46264 * 92.30861 * 11 10 8 38 38 H 1.09003 * 109.47059 * 79.50086 * 14 12 11 39 39 H 1.09003 * 109.46741 * 199.50536 * 14 12 11 40 40 H 1.08997 * 109.46842 * 319.49978 * 14 12 11 41 41 H 1.09002 * 109.47432 * 79.50240 * 17 15 10 42 42 H 1.09001 * 109.47348 * 199.50871 * 17 15 10 43 43 H 1.09008 * 109.46830 * 319.50711 * 17 15 10 44 44 H 1.07997 * 119.99613 * 180.25704 * 18 5 4 45 45 H 1.07998 * 119.92083 * 179.97438 * 19 18 5 46 46 H 0.97001 * 120.00082 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2943 2.3693 0.0050 5 6 1.9333 3.6148 -0.0001 6 6 1.1381 4.8507 -0.0001 7 6 0.0582 4.9587 -0.8033 8 6 -0.1805 3.9610 -1.8458 9 8 0.6548 3.1048 -2.0716 10 7 -1.3253 3.9895 -2.5565 11 6 -2.5328 4.8285 -2.5858 12 6 -3.2990 3.6122 -3.1239 13 1 -4.0190 3.8484 -3.9075 14 6 -3.8627 2.6947 -2.0370 15 6 -1.9164 3.1958 -3.6444 16 1 -1.7233 2.1266 -3.5560 17 6 -1.6001 3.7418 -5.0382 18 6 3.3321 3.6802 0.0008 19 6 4.0753 2.5216 0.0008 20 6 3.4405 1.2844 0.0004 21 8 4.1776 0.1460 -0.0001 22 6 5.5130 0.2818 -0.1196 23 1 5.9571 1.2662 -0.1270 24 6 6.3171 -0.8427 -0.2331 25 7 7.6203 -0.7101 -0.3502 26 14 5.5488 -2.5454 -0.2210 27 1 5.2160 -2.9482 -1.6110 28 1 6.5093 -3.5177 0.3598 29 1 4.3101 -2.5237 0.5980 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 0.2157 2.3144 0.0084 34 1 1.4174 5.6725 0.6426 35 1 -0.6292 5.7818 -0.6762 36 1 -2.8637 5.1476 -1.5975 37 1 -2.4716 5.6523 -3.2970 38 1 -4.7816 3.1250 -1.6388 39 1 -4.0754 1.7144 -2.4634 40 1 -3.1325 2.5911 -1.2344 41 1 -0.5938 3.4389 -5.3274 42 1 -2.3191 3.3456 -5.7553 43 1 -1.6622 4.8300 -5.0248 44 1 3.8277 4.6397 0.0011 45 1 5.1540 2.5736 0.0010 46 1 8.1826 -1.4966 -0.4292 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493612311.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:13 Heat of formation + Delta-G solvation = -22.775500 kcal Electronic energy + Delta-G solvation = -28857.944439 eV Core-core repulsion = 24908.666385 eV Total energy + Delta-G solvation = -3949.278053 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.78418 -41.28500 -39.59920 -39.25640 -37.65681 -34.62292 -34.07528 -32.35770 -31.22269 -31.12370 -30.02160 -28.17780 -27.66612 -27.22817 -25.20273 -23.84167 -23.23202 -22.50337 -20.81563 -19.76924 -19.62058 -18.80807 -18.36546 -17.66812 -17.13736 -16.96109 -16.73310 -16.46210 -16.27448 -15.69216 -15.45608 -15.31407 -15.04298 -14.83916 -14.77142 -14.38325 -14.21805 -14.11305 -13.93933 -13.75044 -13.26157 -13.20109 -13.15793 -12.91563 -12.75121 -12.66893 -12.60746 -12.35620 -12.11514 -12.08847 -11.99958 -11.94923 -11.46114 -11.15577 -11.01489 -10.65696 -10.47957 -9.64532 -9.12154 -8.59393 -8.53221 -6.20580 -0.14558 0.61455 0.99829 1.25105 1.31536 1.49629 1.95561 2.26899 2.41587 2.50157 2.75859 2.95499 3.15188 3.27742 3.66221 3.84829 3.92599 4.02281 4.14956 4.19848 4.21835 4.24593 4.28903 4.38357 4.47839 4.53280 4.55378 4.58429 4.59350 4.64100 4.75402 4.89080 4.94199 4.94907 4.95646 5.02516 5.12640 5.14845 5.23731 5.27929 5.37649 5.46531 5.56258 5.62862 5.72708 5.84704 6.05638 6.56398 6.81606 6.87052 7.33114 7.60008 8.58388 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016532 B = 0.003292 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.307213 B = 8504.388508 C = 9111.432091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.344 6.344 3 C 0.034 3.966 4 C -0.073 4.073 5 C -0.117 4.117 6 C 0.000 4.000 7 C -0.219 4.219 8 C 0.548 3.452 9 O -0.573 6.573 10 N -0.646 5.646 11 C 0.103 3.897 12 C -0.107 4.107 13 H 0.127 0.873 14 C -0.133 4.133 15 C 0.113 3.887 16 H 0.055 0.945 17 C -0.148 4.148 18 C -0.080 4.080 19 C -0.220 4.220 20 C 0.104 3.896 21 O -0.237 6.237 22 C -0.399 4.399 23 H 0.086 0.914 24 C 0.015 3.985 25 N -0.918 5.918 26 Si 0.964 3.036 27 H -0.270 1.270 28 H -0.258 1.258 29 H -0.270 1.270 30 H 0.116 0.884 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.130 0.870 34 H 0.174 0.826 35 H 0.169 0.831 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.036 0.964 41 H 0.032 0.968 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.149 0.851 45 H 0.121 0.879 46 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.009 15.142 -3.711 32.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.259 6.259 3 C -0.011 4.011 4 C -0.092 4.092 5 C -0.118 4.118 6 C -0.019 4.019 7 C -0.239 4.239 8 C 0.342 3.658 9 O -0.454 6.454 10 N -0.381 5.381 11 C -0.019 4.019 12 C -0.125 4.125 13 H 0.145 0.855 14 C -0.190 4.190 15 C 0.009 3.991 16 H 0.073 0.927 17 C -0.206 4.206 18 C -0.099 4.099 19 C -0.239 4.239 20 C 0.054 3.946 21 O -0.145 6.145 22 C -0.475 4.475 23 H 0.103 0.897 24 C -0.184 4.184 25 N -0.559 5.559 26 Si 0.787 3.213 27 H -0.195 1.195 28 H -0.182 1.182 29 H -0.195 1.195 30 H 0.134 0.866 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.148 0.852 34 H 0.191 0.809 35 H 0.186 0.814 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.114 0.886 43 H 0.094 0.906 44 H 0.167 0.833 45 H 0.138 0.862 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -28.159 14.164 -3.708 31.738 hybrid contribution 0.711 -0.826 -0.306 1.132 sum -27.448 13.339 -4.014 30.780 Atomic orbital electron populations 1.23124 0.77463 1.04727 1.01053 1.86081 1.22612 1.26955 1.90275 1.18228 0.88699 0.85849 1.08322 1.20793 0.98338 0.90200 0.99884 1.18748 0.92910 0.93292 1.06806 1.22604 0.90669 0.94058 0.94613 1.23011 1.01300 1.01828 0.97796 1.18696 0.79243 0.84829 0.83063 1.91012 1.44500 1.39733 1.70122 1.49959 1.17671 1.34454 1.35987 1.23347 0.80277 0.94915 1.03339 1.22847 0.94284 0.95874 0.99535 0.85466 1.21532 1.01010 0.99222 0.97215 1.22757 0.91813 0.96017 0.88483 0.92674 1.21924 1.01580 1.02308 0.94816 1.21109 0.92840 0.97445 0.98466 1.20954 1.00435 0.91604 1.10921 1.19127 0.88924 0.87185 0.99336 1.83536 1.19313 1.28879 1.82749 1.20814 0.78595 0.96501 1.51616 0.89697 1.25173 0.94989 1.02697 0.95518 1.69695 1.03986 1.32704 1.49545 0.85317 0.78614 0.78132 0.79245 1.19543 1.18241 1.19451 0.86600 0.91817 0.93683 0.85185 0.80870 0.81367 0.88619 0.87739 0.89780 0.92134 0.94496 0.94872 0.88633 0.90632 0.83314 0.86158 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 9.81 113.37 1.11 2.10 16 2 O -0.34 -16.10 10.28 -78.99 -0.81 -16.91 16 3 C 0.03 1.63 6.70 22.56 0.15 1.78 16 4 C -0.07 -2.89 5.59 22.66 0.13 -2.77 16 5 C -0.12 -4.13 4.54 -20.13 -0.09 -4.22 16 6 C 0.00 0.00 9.80 23.82 0.23 0.23 16 7 C -0.22 -4.54 9.74 23.62 0.23 -4.31 16 8 C 0.55 15.32 7.02 86.33 0.61 15.92 16 9 O -0.57 -22.78 12.96 -4.42 -0.06 -22.84 16 10 N -0.65 -12.96 3.27 -838.78 -2.74 -15.70 16 11 C 0.10 0.95 7.52 83.18 0.63 1.57 16 12 C -0.11 -0.95 4.37 -10.46 -0.05 -1.00 16 13 H 0.13 0.45 8.11 -2.39 -0.02 0.43 16 14 C -0.13 -1.33 9.69 71.98 0.70 -0.63 16 15 C 0.11 1.99 4.53 41.79 0.19 2.17 16 16 H 0.05 1.28 8.12 -2.38 -0.02 1.26 16 17 C -0.15 -2.21 9.79 71.98 0.70 -1.51 16 18 C -0.08 -3.13 9.78 22.56 0.22 -2.91 16 19 C -0.22 -10.83 9.14 22.33 0.20 -10.63 16 20 C 0.10 5.70 6.67 22.80 0.15 5.85 16 21 O -0.24 -14.71 8.35 -6.68 -0.06 -14.77 16 22 C -0.40 -25.57 9.94 67.93 0.68 -24.90 16 23 H 0.09 5.58 5.42 -2.91 -0.02 5.56 16 24 C 0.01 0.93 5.49 84.85 0.47 1.39 16 25 N -0.92 -57.60 13.96 21.62 0.30 -57.30 16 26 Si 0.96 49.94 28.62 68.60 1.96 51.90 16 27 H -0.27 -13.64 7.11 99.48 0.71 -12.94 16 28 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 29 H -0.27 -14.44 7.11 99.48 0.71 -13.73 16 30 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 31 H 0.06 1.74 7.65 -2.38 -0.02 1.73 16 32 H 0.04 1.44 7.67 -2.39 -0.02 1.42 16 33 H 0.13 4.55 5.25 -2.91 -0.02 4.53 16 34 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 35 H 0.17 1.94 7.98 -2.91 -0.02 1.92 16 36 H 0.10 0.58 8.12 -2.39 -0.02 0.56 16 37 H 0.10 0.58 7.30 -2.38 -0.02 0.56 16 38 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.04 0.54 7.94 -2.39 -0.02 0.52 16 41 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 0.90 7.04 -2.38 -0.02 0.88 16 44 H 0.15 4.57 8.06 -2.91 -0.02 4.55 16 45 H 0.12 6.26 5.62 -2.91 -0.02 6.24 16 46 H 0.29 16.37 8.31 -92.71 -0.77 15.59 16 Total: -1.00 -87.41 380.21 5.85 -81.57 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.99 Total: 15.89 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 6.26 Total: -21.84 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -2.44 Total: -73.00 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -0.92 Total: -54.52 kcal Atomic # 14 Polarization: 49.94 SS G_CDS: 1.96 Total: 51.90 kcal Total: -87.41 5.85 -81.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493612311.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.792 kcal (2) G-P(sol) polarization free energy of solvation -87.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds