Wall clock time and date at job start Tue Mar 31 2020 17:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.58219 * 2 1 4 4 C 1.53186 * 109.70565 * 239.64598 * 2 1 3 5 5 H 1.09009 * 109.49451 * 305.45221 * 4 2 1 6 6 O 1.42895 * 109.49954 * 65.55155 * 4 2 1 7 7 C 1.53037 * 109.33687 * 185.52313 * 4 2 1 8 8 C 1.53047 * 109.54176 * 61.31523 * 7 4 2 9 9 C 1.53192 * 109.33549 * 298.68324 * 8 7 4 10 10 N 1.46920 * 108.77582 * 54.61936 * 9 8 7 11 11 C 1.34781 * 120.63234 * 126.41530 * 10 9 8 12 12 O 1.21718 * 119.99929 * 173.09724 * 11 10 9 13 13 C 1.46258 * 119.99395 * 353.09771 * 11 10 9 14 14 C 1.35021 * 119.99236 * 173.01830 * 13 11 10 15 15 C 1.46954 * 120.00494 * 348.69358 * 14 13 11 16 16 C 1.40024 * 120.10470 * 311.96571 * 15 14 13 17 17 C 1.37598 * 119.89938 * 179.69219 * 16 15 14 18 18 C 1.39174 * 120.10138 * 0.60594 * 17 16 15 19 19 O 1.35568 * 119.89706 * 179.69713 * 18 17 16 20 20 C 1.34782 * 116.99630 * 186.14669 * 19 18 17 21 21 H 1.07997 * 120.00386 * 5.61486 * 20 19 18 22 22 C 1.38718 * 119.99929 * 185.61096 * 20 19 18 23 23 N 1.31508 * 120.00391 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 120.00230 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47010 * 89.99996 * 24 22 20 26 26 H 1.48499 * 109.47281 * 210.00327 * 24 22 20 27 27 H 1.48500 * 109.46862 * 330.00048 * 24 22 20 28 28 C 1.39184 * 120.20218 * 359.66745 * 18 17 16 29 29 C 1.37590 * 120.10096 * 0.02617 * 28 18 17 30 30 H 1.08998 * 109.47063 * 307.60043 * 1 2 3 31 31 H 1.08994 * 109.47018 * 67.60378 * 1 2 3 32 32 H 1.08997 * 109.46623 * 187.60241 * 1 2 3 33 33 H 0.96706 * 113.99849 * 180.02562 * 6 4 2 34 34 H 1.08994 * 109.43333 * 301.30851 * 7 4 2 35 35 H 1.09001 * 109.48457 * 181.34721 * 7 4 2 36 36 H 1.08992 * 109.49824 * 178.71343 * 8 7 4 37 37 H 1.08996 * 109.49859 * 58.65126 * 8 7 4 38 38 H 1.08999 * 109.58241 * 174.41226 * 9 8 7 39 39 H 1.09002 * 109.58496 * 294.82954 * 9 8 7 40 40 H 1.07995 * 120.00404 * 353.01050 * 13 11 10 41 41 H 1.08000 * 119.99603 * 168.70175 * 14 13 11 42 42 H 1.08005 * 120.04774 * 359.97438 * 16 15 14 43 43 H 1.08001 * 119.94568 * 180.31440 * 17 16 15 44 44 H 0.97000 * 120.00666 * 179.97438 * 23 22 20 45 45 H 1.07999 * 119.94488 * 180.02562 * 28 18 17 46 46 H 1.08000 * 120.05238 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0466 -0.7288 -1.2445 5 1 1.6081 -1.7257 -1.2904 6 8 1.6826 0.0074 -2.4138 7 6 3.5706 -0.8449 -1.1677 8 6 3.9603 -1.6606 0.0672 9 6 3.4654 -0.9423 1.3265 10 7 2.0226 -0.6980 1.1954 11 6 1.1671 -1.1059 2.1537 12 8 -0.0067 -0.7892 2.0966 13 6 1.6495 -1.9292 3.2622 14 6 0.8285 -2.2201 4.2939 15 6 -0.4547 -1.5174 4.4328 16 6 -0.5063 -0.1221 4.3268 17 6 -1.7110 0.5311 4.4513 18 6 -2.8751 -0.1918 4.6947 19 8 -4.0588 0.4565 4.8227 20 6 -5.1259 -0.2837 5.1831 21 1 -4.9984 -1.3240 5.4438 22 6 -6.3881 0.2906 5.2192 23 7 -6.5436 1.5572 4.9014 24 14 -7.8671 -0.7350 5.7195 25 1 -8.0566 -0.6463 7.1896 26 1 -9.0799 -0.2231 5.0322 27 1 -7.6405 -2.1512 5.3342 28 6 -2.8278 -1.5784 4.8064 29 6 -1.6286 -2.2406 4.6772 30 1 -0.3633 0.6270 0.8142 31 1 -0.3633 0.3915 -0.9501 32 1 -0.3632 -1.0186 0.1360 33 1 1.9778 -0.3972 -3.2411 34 1 4.0071 0.1514 -1.0973 35 1 3.9430 -1.3419 -2.0635 36 1 5.0447 -1.7623 0.1088 37 1 3.5043 -2.6489 0.0092 38 1 3.6525 -1.5663 2.2004 39 1 3.9886 0.0078 1.4347 40 1 2.6621 -2.3044 3.2555 41 1 1.1149 -2.9693 5.0171 42 1 0.3974 0.4401 4.1432 43 1 -1.7524 1.6068 4.3646 44 1 -7.4262 1.9588 4.9263 45 1 -3.7337 -2.1352 4.9949 46 1 -1.5929 -3.3165 4.7636 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493834387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:07 Heat of formation + Delta-G solvation = -42.284045 kcal Electronic energy + Delta-G solvation = -28569.823750 eV Core-core repulsion = 24619.699743 eV Total energy + Delta-G solvation = -3950.124007 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.60235 -38.96520 -38.11890 -36.52139 -35.80770 -33.48237 -32.66172 -32.22396 -31.40928 -30.09348 -28.03832 -27.26095 -25.43340 -24.72991 -23.44190 -21.96137 -21.72117 -21.23197 -20.12545 -18.46922 -17.90038 -17.55470 -17.03577 -16.69757 -15.71760 -15.59919 -14.91903 -14.72815 -14.55092 -14.48281 -14.31579 -13.82893 -13.65756 -13.54645 -13.20366 -13.10137 -13.07879 -12.75996 -12.48511 -12.22657 -12.13913 -11.98752 -11.66751 -11.64964 -11.41074 -11.19831 -11.17646 -10.94023 -10.86436 -10.60972 -10.54165 -10.37293 -10.12333 -9.45654 -9.12935 -8.88016 -8.62822 -8.57092 -7.90994 -6.84546 -6.43239 -3.99155 1.28332 2.43595 2.67025 2.91132 3.15266 3.16182 3.20651 3.57524 3.99207 4.04890 4.36653 4.46079 4.55094 4.70133 4.81688 4.88774 4.96643 5.05043 5.15128 5.22325 5.30130 5.35625 5.44841 5.46478 5.53153 5.57050 5.59093 5.68406 5.75745 5.87179 5.88862 6.05776 6.26015 6.30534 6.35496 6.42731 6.53727 6.64743 6.81143 6.84007 7.05519 7.14410 7.35924 7.37584 7.45771 7.52759 7.57652 7.94362 8.03118 8.54078 9.02452 9.75018 10.74747 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018991 B = 0.002753 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.027292 B =10167.935051 C =11067.221064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.157 3.843 3 H 0.072 0.928 4 C 0.094 3.906 5 H 0.058 0.942 6 O -0.560 6.560 7 C -0.152 4.152 8 C -0.134 4.134 9 C 0.105 3.895 10 N -0.615 5.615 11 C 0.543 3.457 12 O -0.496 6.496 13 C -0.266 4.266 14 C 0.026 3.974 15 C -0.181 4.181 16 C 0.000 4.000 17 C -0.198 4.198 18 C 0.169 3.831 19 O -0.174 6.174 20 C -0.389 4.389 21 H 0.093 0.907 22 C 0.039 3.961 23 N -0.860 5.860 24 Si 0.941 3.059 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.246 4.246 29 C -0.044 4.044 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.377 0.623 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.270 0.730 45 H 0.125 0.875 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.300 -7.942 -8.951 25.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.054 3.946 3 H 0.090 0.910 4 C 0.034 3.966 5 H 0.076 0.924 6 O -0.365 6.365 7 C -0.190 4.190 8 C -0.172 4.172 9 C -0.018 4.018 10 N -0.352 5.352 11 C 0.335 3.665 12 O -0.372 6.372 13 C -0.287 4.287 14 C 0.007 3.993 15 C -0.182 4.182 16 C -0.018 4.018 17 C -0.217 4.217 18 C 0.114 3.886 19 O -0.076 6.076 20 C -0.466 4.466 21 H 0.110 0.890 22 C -0.166 4.166 23 N -0.494 5.494 24 Si 0.766 3.234 25 H -0.199 1.199 26 H -0.202 1.202 27 H -0.192 1.192 28 C -0.265 4.265 29 C -0.063 4.063 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.224 0.776 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.119 0.881 43 H 0.131 0.869 44 H 0.080 0.920 45 H 0.143 0.857 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 21.087 -6.943 -8.585 23.803 hybrid contribution -0.120 -1.081 -0.401 1.160 sum 20.967 -8.024 -8.985 24.182 Atomic orbital electron populations 1.22136 0.91446 1.03996 1.01468 1.20940 0.96708 0.94762 0.82208 0.90985 1.22200 0.93142 0.94938 0.86303 0.92450 1.86508 1.81218 1.52926 1.15832 1.22274 0.96814 1.01332 0.98577 1.21904 1.01311 0.99542 0.94473 1.21778 0.81001 1.00492 0.98525 1.48057 1.06813 1.59726 1.20616 1.18445 0.85822 0.79725 0.82548 1.91052 1.16423 1.54406 1.75270 1.22790 1.00782 1.08164 0.96955 1.22353 0.91815 0.92068 0.93088 1.18269 0.92426 0.93265 1.14262 1.20421 0.95786 0.92555 0.93087 1.19996 0.90550 0.99238 1.11927 1.19526 0.87133 0.90764 0.91134 1.83926 1.13434 1.36258 1.73979 1.21367 0.84208 0.95462 1.45528 0.88984 1.25319 0.98049 0.96364 0.96833 1.70020 1.24057 1.11160 1.44205 0.85710 0.79684 0.79271 0.78763 1.19855 1.20247 1.19160 1.20957 0.98359 0.94229 1.12949 1.20705 0.91759 0.97741 0.96048 0.89947 0.93379 0.91748 0.77558 0.90953 0.91569 0.90464 0.91281 0.89003 0.91513 0.86015 0.86135 0.88131 0.86864 0.91970 0.85711 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 7.59 37.16 0.28 -1.81 16 2 C 0.16 1.98 3.19 -67.60 -0.22 1.76 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.09 0.94 3.00 -26.62 -0.08 0.86 16 5 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 6 O -0.56 -5.58 12.79 -35.23 -0.45 -6.03 16 7 C -0.15 -1.09 5.51 -26.69 -0.15 -1.24 16 8 C -0.13 -0.86 6.08 -26.61 -0.16 -1.03 16 9 C 0.11 0.84 6.35 -3.71 -0.02 0.81 16 10 N -0.62 -7.32 2.97 -166.91 -0.50 -7.81 16 11 C 0.54 8.01 6.60 -13.04 -0.09 7.93 16 12 O -0.50 -9.32 8.10 5.17 0.04 -9.28 16 13 C -0.27 -3.30 9.21 -37.50 -0.35 -3.65 16 14 C 0.03 0.36 9.77 -37.20 -0.36 0.00 16 15 C -0.18 -3.30 4.34 -105.03 -0.46 -3.76 16 16 C 0.00 0.00 6.78 -39.15 -0.27 -0.26 16 17 C -0.20 -4.53 9.97 -39.47 -0.39 -4.92 16 18 C 0.17 4.31 6.66 -38.88 -0.26 4.05 16 19 O -0.17 -5.13 9.74 0.75 0.01 -5.13 16 20 C -0.39 -11.16 9.43 30.91 0.29 -10.87 16 21 H 0.09 2.44 5.29 -52.49 -0.28 2.17 16 22 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 23 N -0.86 -25.72 13.67 55.48 0.76 -24.96 16 24 Si 0.94 20.89 29.55 -169.99 -5.02 15.87 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 28 C -0.25 -5.63 9.11 -39.47 -0.36 -5.99 16 29 C -0.04 -0.86 9.78 -39.15 -0.38 -1.24 16 30 H 0.08 1.50 6.67 -51.93 -0.35 1.16 16 31 H 0.05 0.73 7.68 -51.93 -0.40 0.33 16 32 H 0.06 1.11 6.82 -51.93 -0.35 0.76 16 33 H 0.38 2.03 9.08 45.56 0.41 2.45 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.61 5.34 -51.93 -0.28 0.33 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.12 1.08 5.95 -52.49 -0.31 0.76 16 41 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.10 1.81 7.46 -52.48 -0.39 1.42 16 43 H 0.11 2.54 8.06 -52.49 -0.42 2.12 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.13 2.85 5.70 -52.49 -0.30 2.55 16 46 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 366.48 15.07 5.52 5.52 Total: -1.00 -34.23 366.48 -8.31 -42.54 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.61 Total: 7.64 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -3.06 Total: -18.35 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.26 Total: -32.78 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.40 Total: -20.43 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.23 -8.31 -42.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493834387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.252 kcal (2) G-P(sol) polarization free energy of solvation -34.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds