Wall clock time and date at job start Tue Mar 31 2020 17:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.58219 * 2 1 4 4 C 1.53186 * 109.70565 * 239.64598 * 2 1 3 5 5 H 1.09009 * 109.49451 * 305.45221 * 4 2 1 6 6 O 1.42895 * 109.49954 * 65.55155 * 4 2 1 7 7 C 1.53037 * 109.33687 * 185.52313 * 4 2 1 8 8 C 1.53047 * 109.54176 * 61.31523 * 7 4 2 9 9 C 1.53192 * 109.33549 * 298.68324 * 8 7 4 10 10 N 1.46920 * 108.77582 * 54.61936 * 9 8 7 11 11 C 1.34781 * 120.63234 * 126.41530 * 10 9 8 12 12 O 1.21718 * 119.99929 * 173.09724 * 11 10 9 13 13 C 1.46258 * 119.99395 * 353.09771 * 11 10 9 14 14 C 1.35021 * 119.99236 * 173.01830 * 13 11 10 15 15 C 1.46954 * 120.00494 * 348.69358 * 14 13 11 16 16 C 1.40024 * 120.10470 * 311.96571 * 15 14 13 17 17 C 1.37598 * 119.89938 * 179.69219 * 16 15 14 18 18 C 1.39174 * 120.10138 * 0.60594 * 17 16 15 19 19 O 1.35568 * 119.89706 * 179.69713 * 18 17 16 20 20 C 1.34782 * 116.99630 * 186.14669 * 19 18 17 21 21 H 1.07997 * 120.00386 * 5.61486 * 20 19 18 22 22 C 1.38718 * 119.99929 * 185.61096 * 20 19 18 23 23 N 1.31508 * 120.00391 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 120.00230 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47010 * 89.99996 * 24 22 20 26 26 H 1.48499 * 109.47281 * 210.00327 * 24 22 20 27 27 H 1.48500 * 109.46862 * 330.00048 * 24 22 20 28 28 C 1.39184 * 120.20218 * 359.66745 * 18 17 16 29 29 C 1.37590 * 120.10096 * 0.02617 * 28 18 17 30 30 H 1.08998 * 109.47063 * 307.60043 * 1 2 3 31 31 H 1.08994 * 109.47018 * 67.60378 * 1 2 3 32 32 H 1.08997 * 109.46623 * 187.60241 * 1 2 3 33 33 H 0.96706 * 113.99849 * 180.02562 * 6 4 2 34 34 H 1.08994 * 109.43333 * 301.30851 * 7 4 2 35 35 H 1.09001 * 109.48457 * 181.34721 * 7 4 2 36 36 H 1.08992 * 109.49824 * 178.71343 * 8 7 4 37 37 H 1.08996 * 109.49859 * 58.65126 * 8 7 4 38 38 H 1.08999 * 109.58241 * 174.41226 * 9 8 7 39 39 H 1.09002 * 109.58496 * 294.82954 * 9 8 7 40 40 H 1.07995 * 120.00404 * 353.01050 * 13 11 10 41 41 H 1.08000 * 119.99603 * 168.70175 * 14 13 11 42 42 H 1.08005 * 120.04774 * 359.97438 * 16 15 14 43 43 H 1.08001 * 119.94568 * 180.31440 * 17 16 15 44 44 H 0.97000 * 120.00666 * 179.97438 * 23 22 20 45 45 H 1.07999 * 119.94488 * 180.02562 * 28 18 17 46 46 H 1.08000 * 120.05238 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0466 -0.7288 -1.2445 5 1 1.6081 -1.7257 -1.2904 6 8 1.6826 0.0074 -2.4138 7 6 3.5706 -0.8449 -1.1677 8 6 3.9603 -1.6606 0.0672 9 6 3.4654 -0.9423 1.3265 10 7 2.0226 -0.6980 1.1954 11 6 1.1671 -1.1059 2.1537 12 8 -0.0067 -0.7892 2.0966 13 6 1.6495 -1.9292 3.2622 14 6 0.8285 -2.2201 4.2939 15 6 -0.4547 -1.5174 4.4328 16 6 -0.5063 -0.1221 4.3268 17 6 -1.7110 0.5311 4.4513 18 6 -2.8751 -0.1918 4.6947 19 8 -4.0588 0.4565 4.8227 20 6 -5.1259 -0.2837 5.1831 21 1 -4.9984 -1.3240 5.4438 22 6 -6.3881 0.2906 5.2192 23 7 -6.5436 1.5572 4.9014 24 14 -7.8671 -0.7350 5.7195 25 1 -8.0566 -0.6463 7.1896 26 1 -9.0799 -0.2231 5.0322 27 1 -7.6405 -2.1512 5.3342 28 6 -2.8278 -1.5784 4.8064 29 6 -1.6286 -2.2406 4.6772 30 1 -0.3633 0.6270 0.8142 31 1 -0.3633 0.3915 -0.9501 32 1 -0.3632 -1.0186 0.1360 33 1 1.9778 -0.3972 -3.2411 34 1 4.0071 0.1514 -1.0973 35 1 3.9430 -1.3419 -2.0635 36 1 5.0447 -1.7623 0.1088 37 1 3.5043 -2.6489 0.0092 38 1 3.6525 -1.5663 2.2004 39 1 3.9886 0.0078 1.4347 40 1 2.6621 -2.3044 3.2555 41 1 1.1149 -2.9693 5.0171 42 1 0.3974 0.4401 4.1432 43 1 -1.7524 1.6068 4.3646 44 1 -7.4262 1.9588 4.9263 45 1 -3.7337 -2.1352 4.9949 46 1 -1.5929 -3.3165 4.7636 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493834387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:06 Heat of formation + Delta-G solvation = -66.852725 kcal Electronic energy + Delta-G solvation = -28570.889128 eV Core-core repulsion = 24619.699743 eV Total energy + Delta-G solvation = -3951.189385 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.65460 -40.67065 -39.25737 -38.08239 -36.73849 -34.80849 -34.14061 -33.51900 -32.52301 -31.80820 -29.53852 -28.19589 -27.41757 -25.74499 -24.57098 -23.52762 -22.90000 -22.39849 -21.21997 -19.90118 -19.47658 -18.76306 -18.39114 -17.92579 -16.76641 -16.61484 -16.33438 -16.23712 -15.90503 -15.65433 -15.51754 -15.32589 -15.08731 -14.82244 -14.49830 -14.32490 -14.19443 -13.99996 -13.79294 -13.59371 -13.54448 -13.29688 -13.06799 -12.92568 -12.60651 -12.58569 -12.29490 -12.24141 -12.13208 -11.97454 -11.76497 -11.69921 -11.27393 -10.86047 -10.84956 -10.35101 -10.08448 -9.72099 -9.41443 -8.54394 -8.48930 -6.15829 0.04760 0.71171 1.09064 1.32755 1.44687 1.51422 1.97848 2.16874 2.46056 2.86333 3.22006 3.34625 3.51299 3.59671 3.73636 3.92261 3.94650 4.04362 4.08382 4.13813 4.17336 4.25989 4.36754 4.47219 4.54960 4.56443 4.64284 4.70484 4.76478 4.88228 4.95334 5.01170 5.02842 5.06499 5.10191 5.12160 5.24983 5.28224 5.35065 5.37865 5.47229 5.66218 5.69685 5.73475 5.84193 6.02139 6.25807 6.56068 6.84718 6.95382 7.42000 7.78440 8.74938 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018991 B = 0.002753 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.027292 B =10167.935051 C =11067.221064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.154 3.846 3 H 0.068 0.932 4 C 0.100 3.900 5 H 0.050 0.950 6 O -0.580 6.580 7 C -0.146 4.146 8 C -0.128 4.128 9 C 0.095 3.905 10 N -0.608 5.608 11 C 0.525 3.475 12 O -0.550 6.550 13 C -0.230 4.230 14 C 0.005 3.995 15 C -0.148 4.148 16 C 0.003 3.997 17 C -0.216 4.216 18 C 0.124 3.876 19 O -0.233 6.233 20 C -0.414 4.414 21 H 0.102 0.898 22 C -0.025 4.025 23 N -0.922 5.922 24 Si 1.022 2.978 25 H -0.260 1.260 26 H -0.271 1.271 27 H -0.253 1.253 28 C -0.254 4.254 29 C -0.051 4.051 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.398 0.602 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.115 0.885 39 H 0.078 0.922 40 H 0.175 0.825 41 H 0.170 0.830 42 H 0.119 0.881 43 H 0.099 0.901 44 H 0.273 0.727 45 H 0.118 0.882 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.112 -11.628 -9.345 30.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 H 0.086 0.914 4 C 0.040 3.960 5 H 0.068 0.932 6 O -0.388 6.388 7 C -0.183 4.183 8 C -0.167 4.167 9 C -0.026 4.026 10 N -0.343 5.343 11 C 0.317 3.683 12 O -0.429 6.429 13 C -0.250 4.250 14 C -0.014 4.014 15 C -0.149 4.149 16 C -0.016 4.016 17 C -0.235 4.235 18 C 0.074 3.926 19 O -0.139 6.139 20 C -0.490 4.490 21 H 0.119 0.881 22 C -0.222 4.222 23 N -0.560 5.560 24 Si 0.840 3.160 25 H -0.184 1.184 26 H -0.195 1.195 27 H -0.176 1.176 28 C -0.273 4.273 29 C -0.069 4.069 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.248 0.752 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.087 0.913 38 H 0.133 0.867 39 H 0.096 0.904 40 H 0.192 0.808 41 H 0.187 0.813 42 H 0.137 0.863 43 H 0.117 0.883 44 H 0.082 0.918 45 H 0.136 0.864 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 26.024 -10.665 -9.012 29.534 hybrid contribution -1.083 0.008 -0.503 1.194 sum 24.941 -10.658 -9.515 28.743 Atomic orbital electron populations 1.21894 0.94443 1.01718 0.99646 1.20882 0.94237 0.95466 0.84372 0.91362 1.22053 0.95314 0.93612 0.84972 0.93214 1.86460 1.81856 1.53582 1.16944 1.22234 0.93935 1.01917 1.00264 1.21909 1.03088 0.98819 0.92840 1.22180 0.78011 1.01911 1.00485 1.48137 1.08566 1.58185 1.19427 1.19131 0.85554 0.79887 0.83685 1.91074 1.18840 1.56504 1.76508 1.23204 1.02305 1.04837 0.94643 1.22587 0.89425 0.93691 0.95684 1.18845 0.94588 0.92706 1.08780 1.20644 0.94924 0.93840 0.92147 1.20172 0.91536 0.98942 1.12862 1.19998 0.86748 0.92368 0.93504 1.83888 1.14821 1.37825 1.77400 1.21861 0.84811 0.96031 1.46302 0.88086 1.26683 1.01200 0.97756 0.96589 1.70179 1.24959 1.13556 1.47335 0.84554 0.74817 0.77731 0.78861 1.18447 1.19540 1.17609 1.21085 0.99838 0.93214 1.13161 1.21142 0.90622 0.99791 0.95309 0.93481 0.93804 0.93766 0.75207 0.90973 0.89362 0.87420 0.91341 0.86734 0.90380 0.80780 0.81250 0.86291 0.88273 0.91788 0.86436 0.83618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.95 7.59 71.98 0.55 -3.41 16 2 C 0.15 3.75 3.19 44.97 0.14 3.89 16 3 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 4 C 0.10 1.79 3.00 30.67 0.09 1.88 16 5 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 6 O -0.58 -10.73 12.79 -148.98 -1.91 -12.64 16 7 C -0.15 -1.48 5.51 30.62 0.17 -1.31 16 8 C -0.13 -0.95 6.08 30.67 0.19 -0.77 16 9 C 0.10 1.02 6.35 86.36 0.55 1.57 16 10 N -0.61 -12.75 2.97 -800.18 -2.38 -15.12 16 11 C 0.52 14.15 6.60 86.33 0.57 14.72 16 12 O -0.55 -20.72 8.10 -4.41 -0.04 -20.75 16 13 C -0.23 -4.40 9.21 23.62 0.22 -4.18 16 14 C 0.01 0.12 9.77 23.81 0.23 0.35 16 15 C -0.15 -5.10 4.34 -20.13 -0.09 -5.19 16 16 C 0.00 0.11 6.78 22.55 0.15 0.26 16 17 C -0.22 -10.64 9.97 22.34 0.22 -10.41 16 18 C 0.12 6.86 6.66 22.72 0.15 7.01 16 19 O -0.23 -15.14 9.74 -20.25 -0.20 -15.34 16 20 C -0.41 -25.56 9.43 67.93 0.64 -24.92 16 21 H 0.10 5.73 5.29 -2.91 -0.02 5.71 16 22 C -0.03 -1.50 5.49 84.86 0.47 -1.03 16 23 N -0.92 -59.35 13.67 21.62 0.30 -59.06 16 24 Si 1.02 44.77 29.55 68.60 2.03 46.80 16 25 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 28 C -0.25 -12.11 9.11 22.34 0.20 -11.91 16 29 C -0.05 -1.90 9.78 22.55 0.22 -1.68 16 30 H 0.05 1.86 6.67 -2.39 -0.02 1.84 16 31 H 0.04 1.42 7.68 -2.39 -0.02 1.40 16 32 H 0.04 1.60 6.82 -2.39 -0.02 1.58 16 33 H 0.40 3.46 9.08 -74.05 -0.67 2.79 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.11 0.70 5.34 -2.39 -0.01 0.69 16 39 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.18 1.60 5.95 -2.91 -0.02 1.58 16 41 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 42 H 0.12 4.21 7.46 -2.91 -0.02 4.19 16 43 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 44 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 45 H 0.12 5.65 5.70 -2.91 -0.02 5.63 16 46 H 0.15 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -86.73 366.48 2.82 -83.92 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.34 Total: 27.34 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 4.68 Total: -35.14 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -2.08 Total: -74.18 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -2.14 Total: -48.73 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -86.73 2.82 -83.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493834387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.063 kcal (2) G-P(sol) polarization free energy of solvation -86.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds