Wall clock time and date at job start Tue Mar 31 2020 17:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.70475 * 2 1 4 4 C 1.52760 * 109.50812 * 239.88468 * 2 1 3 5 5 H 1.09000 * 109.56916 * 65.67248 * 4 2 1 6 6 O 1.42900 * 109.38549 * 305.63015 * 4 2 1 7 7 C 1.53043 * 109.38137 * 185.70300 * 4 2 1 8 8 C 1.53047 * 109.53796 * 61.24308 * 7 4 2 9 9 C 1.53194 * 109.30861 * 298.63046 * 8 7 4 10 10 N 1.46926 * 108.77614 * 54.63762 * 9 8 7 11 11 C 1.34779 * 120.63352 * 126.36403 * 10 9 8 12 12 O 1.21722 * 120.00213 * 186.12293 * 11 10 9 13 13 C 1.46256 * 119.99646 * 6.12474 * 11 10 9 14 14 C 1.35023 * 119.99729 * 187.27675 * 13 11 10 15 15 C 1.46963 * 119.99771 * 13.04529 * 14 13 11 16 16 C 1.40021 * 120.10688 * 44.80345 * 15 14 13 17 17 C 1.37594 * 119.89749 * 180.23094 * 16 15 14 18 18 C 1.39175 * 120.10672 * 359.47770 * 17 16 15 19 19 O 1.35566 * 119.90578 * 180.25448 * 18 17 16 20 20 C 1.34786 * 116.99438 * 353.80180 * 19 18 17 21 21 H 1.07998 * 120.00529 * 5.12500 * 20 19 18 22 22 C 1.38720 * 119.99456 * 185.12623 * 20 19 18 23 23 N 1.31499 * 120.00459 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99611 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46986 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.46844 * 119.99726 * 24 22 20 27 27 H 1.48496 * 109.47024 * 239.99946 * 24 22 20 28 28 C 1.39179 * 120.19573 * 0.27496 * 18 17 16 29 29 C 1.37597 * 120.10833 * 359.97438 * 28 18 17 30 30 H 1.09004 * 109.46940 * 303.95766 * 1 2 3 31 31 H 1.09000 * 109.47356 * 63.95595 * 1 2 3 32 32 H 1.08994 * 109.47193 * 183.95880 * 1 2 3 33 33 H 0.96703 * 113.99869 * 180.14323 * 6 4 2 34 34 H 1.08996 * 109.46606 * 301.21897 * 7 4 2 35 35 H 1.09000 * 109.46128 * 181.25637 * 7 4 2 36 36 H 1.08996 * 109.49780 * 178.68073 * 8 7 4 37 37 H 1.08998 * 109.52619 * 58.59727 * 8 7 4 38 38 H 1.08997 * 109.58969 * 294.84700 * 9 8 7 39 39 H 1.08996 * 109.70163 * 174.48693 * 9 8 7 40 40 H 1.07994 * 120.00121 * 7.28536 * 13 11 10 41 41 H 1.07998 * 119.99856 * 193.03313 * 14 13 11 42 42 H 1.08000 * 120.04881 * 359.97438 * 16 15 14 43 43 H 1.08009 * 119.94928 * 179.75260 * 17 16 15 44 44 H 0.97000 * 120.00093 * 180.02562 * 23 22 20 45 45 H 1.08004 * 119.94583 * 180.02562 * 28 18 17 46 46 H 1.07992 * 120.05759 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0401 -0.7225 -1.2455 5 1 1.7632 -0.1565 -2.1350 6 8 1.4583 -2.0261 -1.3094 7 6 3.5638 -0.8461 -1.1727 8 6 3.9523 -1.6686 0.0580 9 6 3.4645 -0.9519 1.3210 10 7 2.0226 -0.6995 1.1945 11 6 1.1674 -1.1070 2.1532 12 8 -0.0330 -0.9925 1.9867 13 6 1.6817 -1.6867 3.3936 14 6 0.8293 -2.2286 4.2897 15 6 -0.5641 -2.4983 3.9084 16 6 -0.8514 -3.1016 2.6779 17 6 -2.1578 -3.3478 2.3232 18 6 -3.1924 -3.0081 3.1899 19 8 -4.4778 -3.2572 2.8385 20 6 -4.6928 -3.7149 1.5890 21 1 -3.8557 -3.9458 0.9470 22 6 -5.9894 -3.8892 1.1279 23 7 -7.0088 -3.6085 1.9097 24 14 -6.2874 -4.5242 -0.6035 25 1 -4.9843 -4.7634 -1.2741 26 1 -7.0525 -5.7954 -0.5397 27 1 -7.0623 -3.5181 -1.3732 28 6 -2.9113 -2.4129 4.4162 29 6 -1.6083 -2.1582 4.7773 30 1 -0.3633 0.5741 0.8524 31 1 -0.3634 0.4512 -0.9233 32 1 -0.3633 -1.0251 0.0709 33 1 1.7392 -2.5451 -2.0755 34 1 4.0057 0.1476 -1.0997 35 1 3.9313 -1.3416 -2.0713 36 1 5.0363 -1.7761 0.0964 37 1 3.4909 -2.6543 -0.0020 38 1 3.9929 -0.0049 1.4310 39 1 3.6506 -1.5777 2.1938 40 1 2.7430 -1.6812 3.5928 41 1 1.1717 -2.4640 5.2865 42 1 -0.0490 -3.3695 2.0065 43 1 -2.3806 -3.8095 1.3725 44 1 -7.9154 -3.7308 1.5873 45 1 -3.7173 -2.1514 5.0859 46 1 -1.3911 -1.6968 5.7292 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493834388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:11 Heat of formation + Delta-G solvation = -38.170853 kcal Electronic energy + Delta-G solvation = -29218.716571 eV Core-core repulsion = 25268.770925 eV Total energy + Delta-G solvation = -3949.945646 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.54164 -38.92731 -38.03649 -36.39336 -35.39628 -33.43458 -32.51552 -32.18210 -31.46506 -30.00697 -28.06527 -27.23126 -25.31971 -24.67791 -23.50307 -21.99441 -21.60216 -21.09680 -19.99952 -18.17537 -17.89882 -17.32476 -16.97844 -16.49329 -15.65846 -15.57692 -15.15171 -14.71831 -14.48115 -14.35176 -14.23723 -13.60947 -13.49363 -13.31775 -13.24464 -13.07956 -12.75873 -12.69420 -12.51393 -12.32468 -12.10837 -11.80752 -11.62962 -11.44793 -11.31379 -11.23045 -11.12210 -10.88235 -10.68153 -10.63700 -10.47537 -10.36090 -9.99523 -9.30416 -9.11404 -8.74786 -8.53808 -8.41366 -7.82170 -6.79404 -6.39844 -3.94964 1.34455 2.48767 2.75895 3.13155 3.17652 3.19410 3.24662 3.72727 4.02849 4.06858 4.49219 4.52672 4.65409 4.76345 4.83571 4.94666 5.13608 5.13893 5.19406 5.31105 5.37174 5.40381 5.44733 5.49457 5.53549 5.60439 5.67962 5.76015 5.85004 5.92546 5.98329 6.05609 6.32119 6.35434 6.43967 6.50151 6.59393 6.74278 6.85628 7.05801 7.11272 7.20317 7.40295 7.55495 7.56794 7.58394 7.70951 7.99397 8.07720 8.68714 9.06536 9.78550 10.78309 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012836 B = 0.003754 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.758658 B = 7457.681152 C = 9063.298967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.156 3.844 3 H 0.073 0.927 4 C 0.091 3.909 5 H 0.061 0.939 6 O -0.547 6.547 7 C -0.152 4.152 8 C -0.131 4.131 9 C 0.110 3.890 10 N -0.609 5.609 11 C 0.545 3.455 12 O -0.499 6.499 13 C -0.267 4.267 14 C 0.023 3.977 15 C -0.182 4.182 16 C 0.010 3.990 17 C -0.238 4.238 18 C 0.170 3.830 19 O -0.175 6.175 20 C -0.387 4.387 21 H 0.094 0.906 22 C 0.039 3.961 23 N -0.862 5.862 24 Si 0.940 3.060 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.207 4.207 29 C -0.047 4.047 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.088 0.912 33 H 0.370 0.630 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.098 0.902 43 H 0.123 0.877 44 H 0.269 0.731 45 H 0.114 0.886 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.982 5.284 -3.988 24.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.052 3.948 3 H 0.091 0.909 4 C 0.031 3.969 5 H 0.078 0.922 6 O -0.351 6.351 7 C -0.190 4.190 8 C -0.170 4.170 9 C -0.014 4.014 10 N -0.344 5.344 11 C 0.337 3.663 12 O -0.375 6.375 13 C -0.288 4.288 14 C 0.004 3.996 15 C -0.183 4.183 16 C -0.009 4.009 17 C -0.258 4.258 18 C 0.115 3.885 19 O -0.078 6.078 20 C -0.463 4.463 21 H 0.111 0.889 22 C -0.165 4.165 23 N -0.497 5.497 24 Si 0.765 3.235 25 H -0.190 1.190 26 H -0.202 1.202 27 H -0.201 1.201 28 C -0.227 4.227 29 C -0.066 4.066 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.107 0.893 33 H 0.216 0.784 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.116 0.884 43 H 0.141 0.859 44 H 0.079 0.921 45 H 0.133 0.867 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 22.537 5.570 -3.419 23.465 hybrid contribution 0.568 -0.363 -1.595 1.732 sum 23.105 5.208 -5.014 24.210 Atomic orbital electron populations 1.22135 0.91369 1.05357 0.99958 1.21126 0.97143 0.93460 0.83034 0.90925 1.22176 0.91373 0.85438 0.97896 0.92163 1.86701 1.71104 1.27007 1.50272 1.22242 0.96876 1.01125 0.98778 1.21817 1.00491 1.00278 0.94380 1.21680 0.81181 0.99880 0.98618 1.47915 1.06733 1.59444 1.20318 1.18382 0.86195 0.78533 0.83226 1.91040 1.14447 1.53734 1.78266 1.22790 0.99311 1.09182 0.97519 1.22325 0.92633 0.88179 0.96513 1.18289 0.91554 1.11118 0.97357 1.20581 0.95179 0.92738 0.92365 1.20954 0.92374 1.10457 1.01978 1.19522 0.85154 0.90900 0.92919 1.83899 1.20475 1.71464 1.31922 1.21439 0.93569 1.43310 0.87970 0.88892 1.25297 0.94252 0.97140 0.99855 1.70028 0.98793 1.44827 1.36029 0.85656 0.78960 0.78452 0.80454 1.19025 1.20162 1.20137 1.19991 0.96345 1.09028 0.97307 1.20611 0.91579 0.97184 0.97214 0.91167 0.94822 0.89293 0.78355 0.91097 0.91629 0.91160 0.90657 0.92135 0.89396 0.86236 0.86254 0.88388 0.85892 0.92103 0.86748 0.87291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 7.31 37.16 0.27 -1.81 16 2 C 0.16 1.92 3.27 -67.82 -0.22 1.70 16 3 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.09 0.91 3.30 -26.83 -0.09 0.82 16 5 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 6 O -0.55 -6.51 11.67 -35.23 -0.41 -6.92 16 7 C -0.15 -1.11 5.61 -26.68 -0.15 -1.26 16 8 C -0.13 -1.01 5.94 -26.61 -0.16 -1.17 16 9 C 0.11 0.97 6.30 -3.71 -0.02 0.95 16 10 N -0.61 -7.69 2.92 -167.16 -0.49 -8.18 16 11 C 0.55 8.61 6.59 -13.04 -0.09 8.53 16 12 O -0.50 -9.87 7.90 5.17 0.04 -9.82 16 13 C -0.27 -3.60 9.07 -37.50 -0.34 -3.94 16 14 C 0.02 0.34 9.79 -37.19 -0.36 -0.03 16 15 C -0.18 -3.45 4.43 -105.02 -0.46 -3.92 16 16 C 0.01 0.21 6.75 -39.15 -0.26 -0.06 16 17 C -0.24 -5.73 9.14 -39.47 -0.36 -6.09 16 18 C 0.17 4.40 6.66 -38.88 -0.26 4.14 16 19 O -0.18 -5.24 9.74 0.74 0.01 -5.23 16 20 C -0.39 -11.31 9.48 30.91 0.29 -11.02 16 21 H 0.09 2.57 5.19 -52.49 -0.27 2.30 16 22 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 23 N -0.86 -25.97 13.67 55.48 0.76 -25.21 16 24 Si 0.94 21.33 29.55 -169.99 -5.02 16.31 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 C -0.21 -4.73 9.97 -39.47 -0.39 -5.12 16 29 C -0.05 -0.92 9.79 -39.14 -0.38 -1.31 16 30 H 0.07 1.25 6.79 -51.93 -0.35 0.90 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.09 1.74 6.23 -51.93 -0.32 1.42 16 33 H 0.37 2.85 9.08 45.56 0.41 3.26 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.71 7.61 -51.93 -0.40 0.32 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.70 5.48 -51.93 -0.28 0.42 16 40 H 0.12 1.19 6.12 -52.49 -0.32 0.87 16 41 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.10 1.97 7.24 -52.49 -0.38 1.59 16 43 H 0.12 3.01 5.62 -52.48 -0.30 2.71 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.11 2.50 8.06 -52.48 -0.42 2.08 16 46 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 364.51 15.07 5.49 5.49 Total: -1.00 -34.99 364.51 -8.29 -43.28 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.57 Total: 8.89 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -3.09 Total: -18.59 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: 0.27 Total: -33.40 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.36 Total: -21.97 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.99 -8.29 -43.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493834388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.105 kcal (2) G-P(sol) polarization free energy of solvation -34.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds