Wall clock time and date at job start Tue Mar 31 2020 17:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.70475 * 2 1 4 4 C 1.52760 * 109.50812 * 239.88468 * 2 1 3 5 5 H 1.09000 * 109.56916 * 65.67248 * 4 2 1 6 6 O 1.42900 * 109.38549 * 305.63015 * 4 2 1 7 7 C 1.53043 * 109.38137 * 185.70300 * 4 2 1 8 8 C 1.53047 * 109.53796 * 61.24308 * 7 4 2 9 9 C 1.53194 * 109.30861 * 298.63046 * 8 7 4 10 10 N 1.46926 * 108.77614 * 54.63762 * 9 8 7 11 11 C 1.34779 * 120.63352 * 126.36403 * 10 9 8 12 12 O 1.21722 * 120.00213 * 186.12293 * 11 10 9 13 13 C 1.46256 * 119.99646 * 6.12474 * 11 10 9 14 14 C 1.35023 * 119.99729 * 187.27675 * 13 11 10 15 15 C 1.46963 * 119.99771 * 13.04529 * 14 13 11 16 16 C 1.40021 * 120.10688 * 44.80345 * 15 14 13 17 17 C 1.37594 * 119.89749 * 180.23094 * 16 15 14 18 18 C 1.39175 * 120.10672 * 359.47770 * 17 16 15 19 19 O 1.35566 * 119.90578 * 180.25448 * 18 17 16 20 20 C 1.34786 * 116.99438 * 353.80180 * 19 18 17 21 21 H 1.07998 * 120.00529 * 5.12500 * 20 19 18 22 22 C 1.38720 * 119.99456 * 185.12623 * 20 19 18 23 23 N 1.31499 * 120.00459 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99611 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46986 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.46844 * 119.99726 * 24 22 20 27 27 H 1.48496 * 109.47024 * 239.99946 * 24 22 20 28 28 C 1.39179 * 120.19573 * 0.27496 * 18 17 16 29 29 C 1.37597 * 120.10833 * 359.97438 * 28 18 17 30 30 H 1.09004 * 109.46940 * 303.95766 * 1 2 3 31 31 H 1.09000 * 109.47356 * 63.95595 * 1 2 3 32 32 H 1.08994 * 109.47193 * 183.95880 * 1 2 3 33 33 H 0.96703 * 113.99869 * 180.14323 * 6 4 2 34 34 H 1.08996 * 109.46606 * 301.21897 * 7 4 2 35 35 H 1.09000 * 109.46128 * 181.25637 * 7 4 2 36 36 H 1.08996 * 109.49780 * 178.68073 * 8 7 4 37 37 H 1.08998 * 109.52619 * 58.59727 * 8 7 4 38 38 H 1.08997 * 109.58969 * 294.84700 * 9 8 7 39 39 H 1.08996 * 109.70163 * 174.48693 * 9 8 7 40 40 H 1.07994 * 120.00121 * 7.28536 * 13 11 10 41 41 H 1.07998 * 119.99856 * 193.03313 * 14 13 11 42 42 H 1.08000 * 120.04881 * 359.97438 * 16 15 14 43 43 H 1.08009 * 119.94928 * 179.75260 * 17 16 15 44 44 H 0.97000 * 120.00093 * 180.02562 * 23 22 20 45 45 H 1.08004 * 119.94583 * 180.02562 * 28 18 17 46 46 H 1.07992 * 120.05759 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0401 -0.7225 -1.2455 5 1 1.7632 -0.1565 -2.1350 6 8 1.4583 -2.0261 -1.3094 7 6 3.5638 -0.8461 -1.1727 8 6 3.9523 -1.6686 0.0580 9 6 3.4645 -0.9519 1.3210 10 7 2.0226 -0.6995 1.1945 11 6 1.1674 -1.1070 2.1532 12 8 -0.0330 -0.9925 1.9867 13 6 1.6817 -1.6867 3.3936 14 6 0.8293 -2.2286 4.2897 15 6 -0.5641 -2.4983 3.9084 16 6 -0.8514 -3.1016 2.6779 17 6 -2.1578 -3.3478 2.3232 18 6 -3.1924 -3.0081 3.1899 19 8 -4.4778 -3.2572 2.8385 20 6 -4.6928 -3.7149 1.5890 21 1 -3.8557 -3.9458 0.9470 22 6 -5.9894 -3.8892 1.1279 23 7 -7.0088 -3.6085 1.9097 24 14 -6.2874 -4.5242 -0.6035 25 1 -4.9843 -4.7634 -1.2741 26 1 -7.0525 -5.7954 -0.5397 27 1 -7.0623 -3.5181 -1.3732 28 6 -2.9113 -2.4129 4.4162 29 6 -1.6083 -2.1582 4.7773 30 1 -0.3633 0.5741 0.8524 31 1 -0.3634 0.4512 -0.9233 32 1 -0.3633 -1.0251 0.0709 33 1 1.7392 -2.5451 -2.0755 34 1 4.0057 0.1476 -1.0997 35 1 3.9313 -1.3416 -2.0713 36 1 5.0363 -1.7761 0.0964 37 1 3.4909 -2.6543 -0.0020 38 1 3.9929 -0.0049 1.4310 39 1 3.6506 -1.5777 2.1938 40 1 2.7430 -1.6812 3.5928 41 1 1.1717 -2.4640 5.2865 42 1 -0.0490 -3.3695 2.0065 43 1 -2.3806 -3.8095 1.3725 44 1 -7.9154 -3.7308 1.5873 45 1 -3.7173 -2.1514 5.0859 46 1 -1.3911 -1.6968 5.7292 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493834388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:10 Heat of formation + Delta-G solvation = -63.316320 kcal Electronic energy + Delta-G solvation = -29219.806960 eV Core-core repulsion = 25268.770925 eV Total energy + Delta-G solvation = -3951.036035 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.61445 -40.67148 -39.24553 -38.04509 -36.36069 -34.80378 -34.14512 -33.40621 -32.59248 -31.77814 -29.61142 -28.21940 -27.35682 -25.69602 -24.68487 -23.53020 -22.93822 -22.30094 -21.07288 -19.88307 -19.36308 -18.89572 -18.07694 -17.71993 -16.72503 -16.61123 -16.38513 -16.23146 -15.93406 -15.74245 -15.54384 -15.33710 -15.09373 -14.75535 -14.39161 -14.17894 -14.01712 -13.94930 -13.81214 -13.59805 -13.56958 -13.44001 -12.98313 -12.66552 -12.51888 -12.43492 -12.36402 -12.33843 -12.14865 -12.01603 -11.89109 -11.49433 -11.22464 -10.89408 -10.74531 -10.33719 -9.98095 -9.65143 -9.28575 -8.54361 -8.49586 -6.16623 0.03341 0.71920 1.12556 1.29784 1.41096 1.49005 2.15167 2.17150 2.54368 2.85559 3.20926 3.30695 3.53481 3.75925 3.82581 3.94026 4.01349 4.04679 4.09698 4.14247 4.18635 4.33927 4.45820 4.51064 4.54942 4.57442 4.71203 4.73326 4.78225 4.84223 4.93737 5.02920 5.06424 5.08781 5.11182 5.18007 5.23061 5.34673 5.38983 5.43459 5.53913 5.67190 5.73741 5.83381 5.88891 6.01787 6.25843 6.65747 6.92214 6.94199 7.52144 7.75713 8.73076 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012836 B = 0.003754 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.758658 B = 7457.681152 C = 9063.298967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.150 3.850 3 H 0.097 0.903 4 C 0.089 3.911 5 H 0.071 0.929 6 O -0.578 6.578 7 C -0.144 4.144 8 C -0.128 4.128 9 C 0.100 3.900 10 N -0.603 5.603 11 C 0.524 3.476 12 O -0.552 6.552 13 C -0.235 4.235 14 C 0.002 3.998 15 C -0.151 4.151 16 C 0.008 3.992 17 C -0.251 4.251 18 C 0.126 3.874 19 O -0.229 6.229 20 C -0.414 4.414 21 H 0.093 0.907 22 C -0.020 4.020 23 N -0.918 5.918 24 Si 1.018 2.982 25 H -0.258 1.258 26 H -0.261 1.261 27 H -0.265 1.265 28 C -0.218 4.218 29 C -0.047 4.047 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.386 0.614 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.170 0.830 41 H 0.170 0.830 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.274 0.726 45 H 0.114 0.886 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.681 6.161 -4.092 30.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.047 3.953 3 H 0.115 0.885 4 C 0.030 3.970 5 H 0.089 0.911 6 O -0.385 6.385 7 C -0.182 4.182 8 C -0.166 4.166 9 C -0.021 4.021 10 N -0.337 5.337 11 C 0.316 3.684 12 O -0.432 6.432 13 C -0.255 4.255 14 C -0.018 4.018 15 C -0.152 4.152 16 C -0.010 4.010 17 C -0.270 4.270 18 C 0.075 3.925 19 O -0.136 6.136 20 C -0.490 4.490 21 H 0.110 0.890 22 C -0.218 4.218 23 N -0.556 5.556 24 Si 0.837 3.163 25 H -0.182 1.182 26 H -0.185 1.185 27 H -0.190 1.190 28 C -0.237 4.237 29 C -0.065 4.065 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.235 0.765 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.187 0.813 41 H 0.187 0.813 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.083 0.917 45 H 0.132 0.868 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 28.353 6.457 -3.524 29.292 hybrid contribution -0.717 -0.440 -1.481 1.703 sum 27.636 6.018 -5.005 28.723 Atomic orbital electron populations 1.21870 0.94781 1.01986 0.98982 1.21241 0.94321 0.95319 0.84423 0.88486 1.22245 0.93406 0.84541 0.96834 0.91101 1.86665 1.72144 1.28177 1.51533 1.22196 0.94205 1.02331 0.99474 1.21811 1.02022 0.98938 0.93879 1.22064 0.78503 1.01712 0.99843 1.48036 1.08333 1.57949 1.19369 1.19045 0.86012 0.78660 0.84673 1.91061 1.16796 1.55848 1.79526 1.23237 1.01515 1.05801 0.94953 1.22581 0.89700 0.90309 0.99174 1.18848 0.94470 1.06582 0.95277 1.20669 0.93730 0.92933 0.93674 1.20942 0.93710 1.11123 1.01254 1.20022 0.84594 0.93153 0.94738 1.83861 1.22525 1.74654 1.32514 1.21805 0.94294 1.44384 0.88526 0.89001 1.26576 0.93411 0.97099 1.04705 1.70158 0.99382 1.47447 1.38604 0.84562 0.79174 0.78351 0.74263 1.18188 1.18524 1.19016 1.20303 0.98299 1.08828 0.96282 1.21106 0.89962 0.96312 0.99119 0.93954 0.94128 0.93609 0.76548 0.89288 0.89958 0.88247 0.92817 0.89503 0.88094 0.81283 0.81283 0.87706 0.87887 0.91683 0.86774 0.82667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.93 7.31 71.98 0.53 -3.40 16 2 C 0.15 3.43 3.27 44.83 0.15 3.58 16 3 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 4 C 0.09 1.57 3.30 30.53 0.10 1.67 16 5 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 6 O -0.58 -13.36 11.67 -148.98 -1.74 -15.10 16 7 C -0.14 -1.47 5.61 30.62 0.17 -1.29 16 8 C -0.13 -1.37 5.94 30.68 0.18 -1.19 16 9 C 0.10 1.25 6.30 86.36 0.54 1.79 16 10 N -0.60 -13.47 2.92 -800.97 -2.34 -15.81 16 11 C 0.52 15.45 6.59 86.33 0.57 16.02 16 12 O -0.55 -22.12 7.90 -4.42 -0.03 -22.15 16 13 C -0.23 -5.19 9.07 23.62 0.21 -4.98 16 14 C 0.00 0.04 9.79 23.82 0.23 0.27 16 15 C -0.15 -5.49 4.43 -20.12 -0.09 -5.57 16 16 C 0.01 0.36 6.75 22.55 0.15 0.51 16 17 C -0.25 -13.02 9.14 22.34 0.20 -12.81 16 18 C 0.13 7.06 6.66 22.72 0.15 7.21 16 19 O -0.23 -15.06 9.74 -20.27 -0.20 -15.25 16 20 C -0.41 -26.39 9.48 67.94 0.64 -25.74 16 21 H 0.09 5.60 5.19 -2.91 -0.02 5.58 16 22 C -0.02 -1.24 5.49 84.86 0.47 -0.77 16 23 N -0.92 -59.14 13.67 21.62 0.30 -58.85 16 24 Si 1.02 46.15 29.55 68.60 2.03 48.18 16 25 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 26 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 28 C -0.22 -10.40 9.97 22.34 0.22 -10.18 16 29 C -0.05 -1.78 9.79 22.55 0.22 -1.56 16 30 H 0.04 1.59 6.79 -2.39 -0.02 1.57 16 31 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.04 1.91 6.23 -2.39 -0.01 1.89 16 33 H 0.39 5.59 9.08 -74.05 -0.67 4.92 16 34 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.05 0.84 7.61 -2.39 -0.02 0.82 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.10 0.98 5.48 -2.39 -0.01 0.96 16 40 H 0.17 2.12 6.12 -2.91 -0.02 2.10 16 41 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 42 H 0.10 4.29 7.24 -2.91 -0.02 4.27 16 43 H 0.10 5.60 5.62 -2.91 -0.02 5.58 16 44 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 45 H 0.11 5.30 8.06 -2.91 -0.02 5.28 16 46 H 0.16 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -88.32 364.51 3.01 -85.31 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.34 Total: 30.14 kcal Atomic # 6 Polarization: -41.13 SS G_CDS: 4.66 Total: -36.47 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -2.04 Total: -74.66 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: -1.97 Total: -52.50 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -88.32 3.01 -85.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493834388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.994 kcal (2) G-P(sol) polarization free energy of solvation -88.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds