Wall clock time and date at job start Tue Mar 31 2020 17:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.70329 * 2 1 4 4 O 1.43169 * 109.70954 * 120.57937 * 2 1 3 5 5 C 1.36106 * 116.71966 * 165.85165 * 4 2 1 6 6 C 1.38701 * 119.40027 * 162.95695 * 5 4 2 7 7 C 1.38197 * 120.07061 * 179.80169 * 6 5 4 8 8 C 1.38252 * 120.10830 * 0.24992 * 7 6 5 9 9 C 1.38195 * 120.11442 * 359.49827 * 8 7 6 10 10 C 1.38698 * 120.06660 * 0.56677 * 9 8 7 11 11 O 1.36113 * 119.39662 * 179.53459 * 10 9 8 12 12 C 1.43188 * 116.69350 * 162.79843 * 11 10 9 13 13 H 1.09004 * 109.70675 * 165.93954 * 12 11 10 14 14 C 1.50695 * 109.71392 * 286.56929 * 12 11 10 15 15 O 1.21286 * 119.99612 * 24.07631 * 14 12 11 16 16 N 1.34770 * 120.00040 * 204.07881 * 14 12 11 17 17 C 1.46925 * 120.63292 * 5.25835 * 16 14 12 18 18 C 1.53629 * 108.53773 * 126.37164 * 17 16 14 19 19 C 1.53033 * 109.24158 * 54.86242 * 18 17 16 20 20 C 1.50705 * 109.44741 * 178.49270 * 19 18 17 21 21 H 1.07999 * 119.99755 * 120.06098 * 20 19 18 22 22 C 1.37872 * 119.99938 * 300.05722 * 20 19 18 23 23 N 1.31510 * 120.00309 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99681 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47139 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46653 * 120.00674 * 24 22 20 27 27 H 1.48498 * 109.47097 * 240.00471 * 24 22 20 28 28 C 1.53038 * 109.54030 * 298.50715 * 19 18 17 29 29 C 1.46932 * 120.62939 * 185.54837 * 16 14 12 30 30 H 1.09000 * 109.47712 * 294.99228 * 1 2 3 31 31 H 1.09006 * 109.47344 * 54.98746 * 1 2 3 32 32 H 1.08999 * 109.47338 * 174.98631 * 1 2 3 33 33 H 1.08000 * 119.96172 * 359.78545 * 6 5 4 34 34 H 1.07991 * 119.94623 * 179.97438 * 7 6 5 35 35 H 1.07995 * 119.94172 * 179.74725 * 8 7 6 36 36 H 1.08002 * 119.96963 * 180.28863 * 9 8 7 37 37 H 1.08994 * 109.58871 * 246.20755 * 17 16 14 38 38 H 1.09002 * 109.58512 * 6.63426 * 17 16 14 39 39 H 1.08996 * 109.63723 * 294.86286 * 18 17 16 40 40 H 1.09001 * 109.42967 * 174.72857 * 18 17 16 41 41 H 1.09000 * 109.46488 * 58.52669 * 19 18 17 42 42 H 0.97001 * 120.00586 * 179.97438 * 23 22 20 43 43 H 1.09000 * 109.49418 * 301.41654 * 28 19 18 44 44 H 1.08994 * 109.52747 * 181.33590 * 28 19 18 45 45 H 1.08999 * 109.58618 * 353.36852 * 29 16 14 46 46 H 1.08995 * 109.59057 * 113.79458 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 8 2.0128 -0.6857 1.1604 5 6 3.3290 -1.0323 1.1629 6 6 3.9428 -1.3666 2.3610 7 6 5.2774 -1.7247 2.3790 8 6 6.0057 -1.7458 1.2041 9 6 5.3990 -1.4189 0.0062 10 6 4.0602 -1.0573 -0.0187 11 8 3.4788 -0.7288 -1.2047 12 6 2.0475 -0.7359 -1.2433 13 1 1.7014 -0.2265 -2.1427 14 6 1.5459 -2.1570 -1.2383 15 8 2.2365 -3.0421 -0.7794 16 7 0.3301 -2.4442 -1.7438 17 6 -0.4698 -1.4050 -2.4063 18 6 -0.8703 -1.9114 -3.8003 19 6 -1.5821 -3.2591 -3.6620 20 6 -2.0099 -3.7427 -5.0237 21 1 -1.6393 -4.6832 -5.4038 22 6 -2.8744 -2.9844 -5.7843 23 7 -3.3254 -1.8389 -5.3217 24 14 -3.4041 -3.5835 -7.4725 25 1 -2.7605 -4.8908 -7.7583 26 1 -4.8804 -3.7423 -7.5006 27 1 -2.9931 -2.5938 -8.5005 28 6 -0.6291 -4.2793 -3.0349 29 6 -0.2235 -3.8011 -1.6372 30 1 -0.3634 0.4342 0.9314 31 1 -0.3634 0.5897 -0.8417 32 1 -0.3634 -1.0237 -0.0898 33 1 3.3771 -1.3467 3.2808 34 1 5.7534 -1.9841 3.3130 35 1 7.0496 -2.0221 1.2218 36 1 5.9690 -1.4407 -0.9109 37 1 -1.3642 -1.2014 -1.8175 38 1 0.1218 -0.4946 -2.5028 39 1 0.0208 -2.0321 -4.4162 40 1 -1.5419 -1.1917 -4.2684 41 1 -2.4595 -3.1429 -3.0258 42 1 -3.9334 -1.3052 -5.8570 43 1 0.2598 -4.3776 -3.6580 44 1 -1.1284 -5.2451 -2.9583 45 1 0.5307 -4.4721 -1.2260 46 1 -1.0982 -3.7889 -0.9870 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543833676.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:08 Heat of formation + Delta-G solvation = -73.156247 kcal Electronic energy + Delta-G solvation = -29823.835090 eV Core-core repulsion = 25872.372363 eV Total energy + Delta-G solvation = -3951.462727 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.79215 -39.54539 -37.69939 -37.43894 -36.62588 -34.03388 -32.95023 -31.16580 -30.68189 -30.15460 -29.09946 -27.71950 -26.03317 -23.85338 -23.29316 -22.69095 -22.50678 -21.39849 -19.69356 -18.93954 -18.52566 -17.71369 -16.96946 -16.67158 -16.25443 -15.81729 -15.30836 -14.96224 -14.80680 -14.59680 -14.44814 -14.01990 -13.86578 -13.69920 -13.27991 -13.17228 -12.85910 -12.75220 -12.71518 -12.62891 -12.25602 -12.02400 -11.82812 -11.70790 -11.56430 -11.35810 -11.08950 -10.97161 -10.67853 -10.44974 -10.40125 -10.19760 -9.79785 -9.52531 -9.25294 -9.01920 -8.62502 -8.45881 -8.13753 -7.98958 -6.10389 -4.16063 1.30269 1.33537 2.57615 2.82293 3.20168 3.23079 3.28653 3.31968 3.36258 3.75114 4.04749 4.35758 4.40232 4.57726 4.59779 4.86073 4.89231 4.95652 5.19201 5.20914 5.30507 5.35898 5.41814 5.46042 5.56652 5.69498 5.80814 5.83484 5.90096 5.96846 6.06336 6.10818 6.13504 6.19629 6.33701 6.43471 6.55539 6.60493 6.78676 6.85975 6.93594 7.02657 7.16058 7.38565 7.57562 7.72138 7.82937 7.94970 8.32531 8.32872 8.87421 9.49591 10.95258 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.025944 B = 0.003034 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.996104 B = 9227.478784 C = 9497.330209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.067 3.933 3 H 0.094 0.906 4 O -0.301 6.301 5 C 0.066 3.934 6 C -0.118 4.118 7 C -0.120 4.120 8 C -0.120 4.120 9 C -0.112 4.112 10 C 0.068 3.932 11 O -0.284 6.284 12 C 0.031 3.969 13 H 0.151 0.849 14 C 0.497 3.503 15 O -0.531 6.531 16 N -0.592 5.592 17 C 0.096 3.904 18 C -0.126 4.126 19 C 0.049 3.951 20 C -0.511 4.511 21 H 0.055 0.945 22 C 0.061 3.939 23 N -0.892 5.892 24 Si 0.890 3.110 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.284 1.284 28 C -0.123 4.123 29 C 0.112 3.888 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.040 0.960 40 H 0.107 0.893 41 H 0.028 0.972 42 H 0.260 0.740 43 H 0.052 0.948 44 H 0.061 0.939 45 H 0.079 0.921 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.495 6.452 12.892 18.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.010 3.990 3 H 0.112 0.888 4 O -0.215 6.215 5 C 0.021 3.979 6 C -0.136 4.136 7 C -0.138 4.138 8 C -0.139 4.139 9 C -0.131 4.131 10 C 0.023 3.977 11 O -0.197 6.197 12 C -0.029 4.029 13 H 0.168 0.832 14 C 0.283 3.717 15 O -0.408 6.408 16 N -0.326 5.326 17 C -0.025 4.025 18 C -0.165 4.165 19 C 0.031 3.969 20 C -0.549 4.549 21 H 0.074 0.926 22 C -0.139 4.139 23 N -0.531 5.531 24 Si 0.719 3.281 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.210 1.210 28 C -0.161 4.161 29 C -0.009 4.009 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.125 0.875 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.097 0.903 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.683 6.135 13.038 18.550 hybrid contribution -0.548 -0.216 -1.249 1.381 sum 11.135 5.920 11.789 17.263 Atomic orbital electron populations 1.22248 0.90309 1.05125 1.04200 1.23044 0.97455 0.95231 0.83272 0.88807 1.86305 1.21936 1.73110 1.40192 1.18846 0.83830 1.01713 0.93519 1.20370 0.94785 1.02970 0.95518 1.20830 0.93218 1.01266 0.98512 1.20836 1.00024 1.01324 0.91680 1.20393 0.92174 1.01212 0.99285 1.18831 0.93648 1.01330 0.83867 1.86408 1.18692 1.83936 1.30692 1.23400 0.80920 0.96133 1.02470 0.83152 1.20509 0.82064 0.90240 0.78890 1.90702 1.55554 1.47751 1.46818 1.48255 1.16534 1.12167 1.55657 1.22455 0.94346 0.88976 0.96752 1.22151 1.00247 1.02362 0.91692 1.18630 0.92555 0.89966 0.95777 1.21237 1.26688 1.05667 1.01326 0.92627 1.24949 0.95909 0.94980 0.98099 1.69823 1.33072 1.12670 1.37565 0.86557 0.78367 0.78912 0.84311 1.19828 1.21024 1.21035 1.22012 1.00340 1.00164 0.93625 1.21739 0.97887 0.82172 0.99142 0.90438 0.89026 0.89956 0.85155 0.85378 0.85346 0.85067 0.91035 0.91728 0.94070 0.87515 0.95350 0.92998 0.92893 0.92012 0.90306 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 7.78 37.16 0.29 -1.47 16 2 C 0.07 0.85 3.34 -26.49 -0.09 0.76 16 3 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 4 O -0.30 -4.55 9.71 -32.86 -0.32 -4.87 16 5 C 0.07 1.01 5.88 -39.14 -0.23 0.78 16 6 C -0.12 -1.53 9.96 -39.43 -0.39 -1.92 16 7 C -0.12 -1.33 10.04 -39.59 -0.40 -1.73 16 8 C -0.12 -1.36 10.04 -39.59 -0.40 -1.75 16 9 C -0.11 -1.52 9.96 -39.43 -0.39 -1.91 16 10 C 0.07 1.07 5.30 -39.14 -0.21 0.86 16 11 O -0.28 -4.57 10.06 -46.44 -0.47 -5.04 16 12 C 0.03 0.45 2.90 -27.64 -0.08 0.37 16 13 H 0.15 1.84 6.06 -51.93 -0.31 1.52 16 14 C 0.50 8.84 5.85 -10.99 -0.06 8.78 16 15 O -0.53 -11.22 14.52 -12.90 -0.19 -11.41 16 16 N -0.59 -10.17 2.21 -172.50 -0.38 -10.55 16 17 C 0.10 1.54 4.12 -3.48 -0.01 1.53 16 18 C -0.13 -2.61 5.17 -26.39 -0.14 -2.74 16 19 C 0.05 1.12 2.06 -91.73 -0.19 0.93 16 20 C -0.51 -13.24 8.56 -34.44 -0.29 -13.54 16 21 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 22 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 23 N -0.89 -23.55 11.30 55.43 0.63 -22.93 16 24 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 C -0.12 -2.47 5.30 -26.61 -0.14 -2.61 16 29 C 0.11 2.01 6.44 -3.71 -0.02 1.99 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.81 6.93 -51.93 -0.36 0.45 16 32 H 0.08 1.07 5.13 -51.93 -0.27 0.80 16 33 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.07 1.09 7.15 -51.93 -0.37 0.72 16 38 H 0.06 0.85 4.45 -51.93 -0.23 0.62 16 39 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.11 2.45 6.03 -51.93 -0.31 2.14 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 43 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.08 1.45 7.00 -51.93 -0.36 1.09 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 354.70 15.07 5.35 5.35 Total: -1.00 -30.86 354.70 -9.67 -40.54 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.41 Total: 3.65 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -2.86 Total: -10.16 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.24 Total: -33.48 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.97 Total: -21.31 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.86 -9.67 -40.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543833676.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.620 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds