Wall clock time and date at job start Tue Mar 31 2020 17:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.70329 * 2 1 4 4 O 1.43169 * 109.70954 * 120.57937 * 2 1 3 5 5 C 1.36106 * 116.71966 * 165.85165 * 4 2 1 6 6 C 1.38701 * 119.40027 * 162.95695 * 5 4 2 7 7 C 1.38197 * 120.07061 * 179.80169 * 6 5 4 8 8 C 1.38252 * 120.10830 * 0.24992 * 7 6 5 9 9 C 1.38195 * 120.11442 * 359.49827 * 8 7 6 10 10 C 1.38698 * 120.06660 * 0.56677 * 9 8 7 11 11 O 1.36113 * 119.39662 * 179.53459 * 10 9 8 12 12 C 1.43188 * 116.69350 * 162.79843 * 11 10 9 13 13 H 1.09004 * 109.70675 * 165.93954 * 12 11 10 14 14 C 1.50695 * 109.71392 * 286.56929 * 12 11 10 15 15 O 1.21286 * 119.99612 * 24.07631 * 14 12 11 16 16 N 1.34770 * 120.00040 * 204.07881 * 14 12 11 17 17 C 1.46925 * 120.63292 * 5.25835 * 16 14 12 18 18 C 1.53629 * 108.53773 * 126.37164 * 17 16 14 19 19 C 1.53033 * 109.24158 * 54.86242 * 18 17 16 20 20 C 1.50705 * 109.44741 * 178.49270 * 19 18 17 21 21 H 1.07999 * 119.99755 * 120.06098 * 20 19 18 22 22 C 1.37872 * 119.99938 * 300.05722 * 20 19 18 23 23 N 1.31510 * 120.00309 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99681 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47139 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46653 * 120.00674 * 24 22 20 27 27 H 1.48498 * 109.47097 * 240.00471 * 24 22 20 28 28 C 1.53038 * 109.54030 * 298.50715 * 19 18 17 29 29 C 1.46932 * 120.62939 * 185.54837 * 16 14 12 30 30 H 1.09000 * 109.47712 * 294.99228 * 1 2 3 31 31 H 1.09006 * 109.47344 * 54.98746 * 1 2 3 32 32 H 1.08999 * 109.47338 * 174.98631 * 1 2 3 33 33 H 1.08000 * 119.96172 * 359.78545 * 6 5 4 34 34 H 1.07991 * 119.94623 * 179.97438 * 7 6 5 35 35 H 1.07995 * 119.94172 * 179.74725 * 8 7 6 36 36 H 1.08002 * 119.96963 * 180.28863 * 9 8 7 37 37 H 1.08994 * 109.58871 * 246.20755 * 17 16 14 38 38 H 1.09002 * 109.58512 * 6.63426 * 17 16 14 39 39 H 1.08996 * 109.63723 * 294.86286 * 18 17 16 40 40 H 1.09001 * 109.42967 * 174.72857 * 18 17 16 41 41 H 1.09000 * 109.46488 * 58.52669 * 19 18 17 42 42 H 0.97001 * 120.00586 * 179.97438 * 23 22 20 43 43 H 1.09000 * 109.49418 * 301.41654 * 28 19 18 44 44 H 1.08994 * 109.52747 * 181.33590 * 28 19 18 45 45 H 1.08999 * 109.58618 * 353.36852 * 29 16 14 46 46 H 1.08995 * 109.59057 * 113.79458 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 8 2.0128 -0.6857 1.1604 5 6 3.3290 -1.0323 1.1629 6 6 3.9428 -1.3666 2.3610 7 6 5.2774 -1.7247 2.3790 8 6 6.0057 -1.7458 1.2041 9 6 5.3990 -1.4189 0.0062 10 6 4.0602 -1.0573 -0.0187 11 8 3.4788 -0.7288 -1.2047 12 6 2.0475 -0.7359 -1.2433 13 1 1.7014 -0.2265 -2.1427 14 6 1.5459 -2.1570 -1.2383 15 8 2.2365 -3.0421 -0.7794 16 7 0.3301 -2.4442 -1.7438 17 6 -0.4698 -1.4050 -2.4063 18 6 -0.8703 -1.9114 -3.8003 19 6 -1.5821 -3.2591 -3.6620 20 6 -2.0099 -3.7427 -5.0237 21 1 -1.6393 -4.6832 -5.4038 22 6 -2.8744 -2.9844 -5.7843 23 7 -3.3254 -1.8389 -5.3217 24 14 -3.4041 -3.5835 -7.4725 25 1 -2.7605 -4.8908 -7.7583 26 1 -4.8804 -3.7423 -7.5006 27 1 -2.9931 -2.5938 -8.5005 28 6 -0.6291 -4.2793 -3.0349 29 6 -0.2235 -3.8011 -1.6372 30 1 -0.3634 0.4342 0.9314 31 1 -0.3634 0.5897 -0.8417 32 1 -0.3634 -1.0237 -0.0898 33 1 3.3771 -1.3467 3.2808 34 1 5.7534 -1.9841 3.3130 35 1 7.0496 -2.0221 1.2218 36 1 5.9690 -1.4407 -0.9109 37 1 -1.3642 -1.2014 -1.8175 38 1 0.1218 -0.4946 -2.5028 39 1 0.0208 -2.0321 -4.4162 40 1 -1.5419 -1.1917 -4.2684 41 1 -2.4595 -3.1429 -3.0258 42 1 -3.9334 -1.3052 -5.8570 43 1 0.2598 -4.3776 -3.6580 44 1 -1.1284 -5.2451 -2.9583 45 1 0.5307 -4.4721 -1.2260 46 1 -1.0982 -3.7889 -0.9870 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543833676.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:07 Heat of formation + Delta-G solvation = -89.409693 kcal Electronic energy + Delta-G solvation = -29824.539892 eV Core-core repulsion = 25872.372363 eV Total energy + Delta-G solvation = -3952.167529 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.89111 -40.85252 -38.78523 -38.58184 -38.02302 -35.60300 -34.30302 -32.74105 -31.79568 -31.56254 -30.06094 -28.95234 -27.67218 -24.92448 -24.85480 -23.95484 -23.63606 -22.71711 -21.18448 -20.01959 -19.70058 -19.06912 -18.32370 -18.06640 -17.69301 -16.99905 -16.55960 -16.46569 -16.01555 -15.79519 -15.64452 -15.29831 -14.99012 -14.84581 -14.75249 -14.57809 -14.50090 -14.06722 -13.91481 -13.66441 -13.49905 -13.29103 -13.10705 -12.92467 -12.81115 -12.71440 -12.49871 -12.45029 -12.17602 -12.00925 -11.94939 -11.52482 -11.41031 -11.03656 -11.01593 -10.72641 -10.40161 -9.64990 -9.60249 -9.01507 -8.08940 -6.20843 0.32631 0.37160 1.28373 1.39403 1.43667 1.52715 1.70665 2.05507 2.19294 2.43709 2.78379 3.01616 3.17944 3.17977 3.58487 3.61427 3.88038 3.95423 4.09594 4.15241 4.20691 4.28819 4.30716 4.42281 4.43839 4.50187 4.51853 4.63927 4.65990 4.73062 4.80188 4.92043 4.93363 5.13142 5.14797 5.20271 5.21244 5.24413 5.38871 5.47393 5.52271 5.63800 5.72514 5.85591 5.98232 6.11703 6.29715 6.38085 6.40363 6.87305 6.95157 7.46634 8.94584 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.025944 B = 0.003034 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.996104 B = 9227.478784 C = 9497.330209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.067 3.933 3 H 0.118 0.882 4 O -0.317 6.317 5 C 0.042 3.958 6 C -0.131 4.131 7 C -0.113 4.113 8 C -0.117 4.117 9 C -0.129 4.129 10 C 0.036 3.964 11 O -0.299 6.299 12 C 0.030 3.970 13 H 0.174 0.826 14 C 0.494 3.506 15 O -0.570 6.570 16 N -0.591 5.591 17 C 0.107 3.893 18 C -0.119 4.119 19 C 0.047 3.953 20 C -0.535 4.535 21 H 0.043 0.957 22 C 0.022 3.978 23 N -0.907 5.907 24 Si 0.945 3.055 25 H -0.276 1.276 26 H -0.280 1.280 27 H -0.280 1.280 28 C -0.113 4.113 29 C 0.118 3.882 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.144 0.856 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.138 0.862 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.025 0.975 40 H 0.087 0.913 41 H 0.010 0.990 42 H 0.262 0.738 43 H 0.036 0.964 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.277 7.548 13.955 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.010 3.990 3 H 0.136 0.864 4 O -0.233 6.233 5 C -0.003 4.003 6 C -0.150 4.150 7 C -0.131 4.131 8 C -0.135 4.135 9 C -0.148 4.148 10 C -0.008 4.008 11 O -0.213 6.213 12 C -0.030 4.030 13 H 0.191 0.809 14 C 0.282 3.718 15 O -0.449 6.449 16 N -0.324 5.324 17 C -0.014 4.014 18 C -0.157 4.157 19 C 0.029 3.971 20 C -0.573 4.573 21 H 0.061 0.939 22 C -0.178 4.178 23 N -0.546 5.546 24 Si 0.771 3.229 25 H -0.201 1.201 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.151 4.151 29 C -0.004 4.004 30 H 0.110 0.890 31 H 0.134 0.866 32 H 0.079 0.921 33 H 0.162 0.838 34 H 0.182 0.818 35 H 0.180 0.820 36 H 0.156 0.844 37 H 0.104 0.896 38 H 0.118 0.882 39 H 0.044 0.956 40 H 0.105 0.895 41 H 0.028 0.972 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.459 7.245 14.101 20.163 hybrid contribution -0.746 -0.614 -1.550 1.827 sum 11.713 6.631 12.550 18.403 Atomic orbital electron populations 1.22295 0.88990 1.04256 1.06075 1.23309 0.98383 0.95719 0.81573 0.86417 1.86266 1.22136 1.73640 1.41212 1.19181 0.84050 1.02838 0.94250 1.20759 0.95904 1.02863 0.95439 1.21302 0.92470 0.99363 0.99967 1.21281 1.01574 0.99760 0.90837 1.20750 0.91838 1.01480 1.00723 1.19189 0.94619 1.03127 0.83911 1.86369 1.19261 1.84204 1.31426 1.23576 0.80709 0.94103 1.04604 0.80917 1.21128 0.81428 0.91433 0.77806 1.90672 1.56498 1.49320 1.48444 1.48270 1.16668 1.11929 1.55540 1.22422 0.95539 0.89566 0.93877 1.21927 0.98781 1.00733 0.94272 1.18592 0.92580 0.91795 0.94138 1.21540 1.27287 1.05483 1.03025 0.93911 1.25549 0.96041 0.95239 1.00927 1.69907 1.33190 1.13089 1.38463 0.85712 0.77955 0.78294 0.80893 1.20090 1.20617 1.20567 1.21853 0.98971 0.99746 0.94550 1.21600 0.98254 0.82847 0.97699 0.89035 0.86629 0.92136 0.83839 0.81824 0.82014 0.84424 0.89556 0.88158 0.95579 0.89512 0.97206 0.92822 0.94473 0.91857 0.90917 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 7.78 71.98 0.56 -2.50 16 2 C 0.07 1.57 3.34 30.75 0.10 1.67 16 3 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 4 O -0.32 -9.33 9.71 -82.53 -0.80 -10.13 16 5 C 0.04 1.25 5.88 22.56 0.13 1.38 16 6 C -0.13 -3.23 9.96 22.37 0.22 -3.01 16 7 C -0.11 -2.21 10.04 22.26 0.22 -1.99 16 8 C -0.12 -2.36 10.04 22.26 0.22 -2.13 16 9 C -0.13 -3.40 9.96 22.37 0.22 -3.18 16 10 C 0.04 1.12 5.30 22.56 0.12 1.24 16 11 O -0.30 -9.52 10.06 -69.65 -0.70 -10.22 16 12 C 0.03 0.84 2.90 30.00 0.09 0.92 16 13 H 0.17 3.83 6.06 -2.38 -0.01 3.82 16 14 C 0.49 17.39 5.85 87.66 0.51 17.90 16 15 O -0.57 -24.35 14.52 14.59 0.21 -24.14 16 16 N -0.59 -19.94 2.21 -818.07 -1.81 -21.75 16 17 C 0.11 3.28 4.12 86.51 0.36 3.63 16 18 C -0.12 -4.90 5.17 30.82 0.16 -4.74 16 19 C 0.05 2.19 2.06 -11.51 -0.02 2.17 16 20 C -0.54 -28.27 8.56 25.60 0.22 -28.05 16 21 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 22 C 0.02 1.14 5.30 84.65 0.45 1.59 16 23 N -0.91 -47.95 11.30 21.44 0.24 -47.71 16 24 Si 0.94 42.06 29.54 68.60 2.03 44.09 16 25 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 26 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 27 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 28 C -0.11 -4.61 5.30 30.67 0.16 -4.45 16 29 C 0.12 4.24 6.44 86.36 0.56 4.80 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.12 1.62 6.93 -2.38 -0.02 1.61 16 32 H 0.06 1.45 5.13 -2.39 -0.01 1.44 16 33 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 34 H 0.16 1.95 8.06 -2.92 -0.02 1.93 16 35 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 36 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 37 H 0.09 2.46 7.15 -2.39 -0.02 2.44 16 38 H 0.10 2.36 4.45 -2.39 -0.01 2.35 16 39 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.09 3.98 6.03 -2.39 -0.01 3.97 16 41 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.26 13.22 8.31 -92.71 -0.77 12.45 16 43 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.07 2.72 7.00 -2.39 -0.02 2.70 16 46 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -68.63 354.70 4.45 -64.18 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 1.00 Total: 20.43 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 4.29 Total: -14.75 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -1.57 Total: -69.46 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -1.29 Total: -44.50 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -68.63 4.45 -64.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543833676.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.226 kcal (2) G-P(sol) polarization free energy of solvation -68.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds