Wall clock time and date at job start Tue Mar 31 2020 16:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46753 * 2 1 4 4 O 1.42899 * 109.47201 * 119.99977 * 2 1 3 5 5 C 1.42892 * 114.00099 * 152.12573 * 4 2 1 6 6 C 1.53043 * 109.46315 * 152.07405 * 5 4 2 7 7 C 1.53193 * 109.31632 * 181.38272 * 6 5 4 8 8 N 1.46924 * 108.77663 * 305.36839 * 7 6 5 9 9 S 1.65599 * 120.62996 * 233.58502 * 8 7 6 10 10 O 1.42097 * 104.27559 * 333.92274 * 9 8 7 11 11 O 1.42101 * 104.27437 * 206.06921 * 9 8 7 12 12 C 1.81396 * 104.44994 * 89.99875 * 9 8 7 13 13 C 1.52998 * 109.47015 * 188.69161 * 12 9 8 14 14 C 1.50700 * 115.56349 * 319.81955 * 13 12 9 15 15 H 1.07997 * 119.99989 * 99.69634 * 14 13 12 16 16 C 1.37873 * 120.00425 * 279.70072 * 14 13 12 17 17 N 1.31509 * 120.00306 * 190.60791 * 16 14 13 18 18 Si 1.86811 * 119.99820 * 10.60554 * 16 14 13 19 19 H 1.48497 * 109.46623 * 86.27433 * 18 16 14 20 20 H 1.48496 * 109.47044 * 206.27710 * 18 16 14 21 21 H 1.48500 * 109.46679 * 326.27683 * 18 16 14 22 22 C 1.52999 * 117.49919 * 105.51257 * 13 12 9 23 23 C 1.52994 * 60.00282 * 107.49238 * 22 13 12 24 24 C 1.46928 * 118.73823 * 53.85368 * 8 7 6 25 25 C 1.53037 * 109.46093 * 272.14391 * 5 4 2 26 26 H 1.09000 * 109.46902 * 304.72511 * 1 2 3 27 27 H 1.08995 * 109.46921 * 64.72180 * 1 2 3 28 28 H 1.08995 * 109.46511 * 184.72372 * 1 2 3 29 29 H 1.08997 * 109.47580 * 239.99964 * 2 1 3 30 30 H 1.09006 * 109.46759 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47265 * 299.99824 * 3 2 1 32 32 H 1.08996 * 109.46910 * 60.00434 * 3 2 1 33 33 H 1.08999 * 109.46632 * 32.10274 * 5 4 2 34 34 H 1.09000 * 109.49473 * 61.43148 * 6 5 4 35 35 H 1.08994 * 109.52618 * 301.35593 * 6 5 4 36 36 H 1.08991 * 109.58900 * 185.57686 * 7 6 5 37 37 H 1.08998 * 109.69923 * 65.22213 * 7 6 5 38 38 H 1.09006 * 109.47197 * 68.69176 * 12 9 8 39 39 H 1.08998 * 109.47118 * 308.69024 * 12 9 8 40 40 H 0.97003 * 120.00225 * 179.97438 * 17 16 14 41 41 H 1.09001 * 117.49796 * 214.98068 * 22 13 12 42 42 H 1.08995 * 117.49724 * 359.97438 * 22 13 12 43 43 H 1.09006 * 117.49719 * 252.51554 * 23 22 13 44 44 H 1.08994 * 117.50526 * 107.49359 * 23 22 13 45 45 H 1.09001 * 109.58383 * 65.93371 * 24 8 7 46 46 H 1.09005 * 109.58384 * 186.34983 * 24 8 7 47 47 H 1.09006 * 109.49869 * 298.56268 * 25 5 4 48 48 H 1.09001 * 109.50049 * 58.62548 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2881 -1.2838 1.0031 6 6 3.9994 -1.3471 2.3567 7 6 5.3866 -1.9702 2.1715 8 7 5.2354 -3.2722 1.5079 9 16 5.8944 -4.6389 2.1713 10 8 6.9852 -4.1612 2.9466 11 8 6.1063 -5.5002 1.0612 12 6 4.5888 -5.2953 3.2460 13 6 5.1496 -6.4441 4.0866 14 6 6.0866 -7.3794 3.3666 15 1 7.1545 -7.2709 3.4852 16 6 5.5805 -8.3737 2.5565 17 7 6.3752 -9.3149 2.0961 18 14 3.7659 -8.3838 2.1129 19 1 3.5438 -7.5308 0.9178 20 1 3.3367 -9.7740 1.8157 21 1 2.9748 -7.8545 3.2528 22 6 5.4257 -6.1678 5.5658 23 6 4.2392 -7.0442 5.1599 24 6 4.4935 -3.3377 0.2413 25 6 3.1117 -2.7002 0.4509 26 1 -0.3633 0.5854 0.8446 27 1 -0.3633 0.4388 -0.9292 28 1 -0.3632 -1.0242 0.0846 29 1 1.8935 -0.5138 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.8846 -0.6946 0.3066 34 1 3.4157 -1.9570 3.0462 35 1 4.1038 -0.3402 2.7607 36 1 5.8579 -2.1085 3.1445 37 1 6.0041 -1.3159 1.5561 38 1 3.7643 -5.6615 2.6341 39 1 4.2290 -4.5050 3.9049 40 1 6.0191 -10.0146 1.5265 41 1 6.2852 -6.6625 6.0183 42 1 5.2083 -5.1675 5.9401 43 1 3.2406 -6.6205 5.2671 44 1 4.3179 -8.1154 5.3453 45 1 5.0377 -2.7919 -0.5295 46 1 4.3755 -4.3787 -0.0596 47 1 2.5364 -3.2975 1.1584 48 1 2.5837 -2.6563 -0.5017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562714662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:13 Heat of formation + Delta-G solvation = -99.659396 kcal Electronic energy + Delta-G solvation = -28493.286942 eV Core-core repulsion = 24676.118904 eV Total energy + Delta-G solvation = -3817.168038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.49121 -37.26661 -37.05157 -36.30286 -35.02426 -33.24165 -32.19474 -31.16859 -30.72397 -28.53952 -27.54727 -25.54750 -24.05640 -23.50731 -21.64466 -21.39666 -20.64194 -19.25944 -18.43878 -17.49577 -16.93071 -16.56808 -15.75658 -15.36926 -15.31349 -15.00610 -14.81938 -14.26784 -14.17075 -14.07826 -13.87103 -13.58569 -13.19352 -13.02071 -12.61726 -12.58177 -12.53043 -12.52491 -12.28857 -12.15201 -11.98922 -11.41324 -11.33843 -11.30652 -11.17968 -11.06608 -10.93407 -10.85851 -10.74212 -10.62188 -10.51984 -10.40330 -10.11479 -9.68383 -9.63091 -9.10987 -8.89406 -8.62676 -8.43282 -6.20363 -4.30983 0.98620 3.24586 3.30647 3.33246 3.34583 3.40629 4.36297 4.52151 4.56651 4.60921 4.64280 4.74362 4.78751 4.88027 4.90770 4.95370 5.04014 5.09969 5.14446 5.20990 5.26240 5.27494 5.46258 5.47157 5.52077 5.57727 5.61648 5.65846 5.68964 5.74422 5.82299 5.89835 5.90529 5.99125 6.01453 6.08625 6.14534 6.23712 6.25492 6.47314 6.60674 6.78957 6.86997 7.10609 7.11258 7.61217 8.35754 8.85925 9.43377 10.90982 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017199 B = 0.003906 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.656532 B = 7166.308996 C = 7478.999354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.079 3.921 3 C -0.175 4.175 4 O -0.377 6.377 5 C 0.094 3.906 6 C -0.132 4.132 7 C 0.124 3.876 8 N -1.016 6.016 9 S 2.626 3.374 10 O -0.960 6.960 11 O -0.933 6.933 12 C -0.584 4.584 13 C 0.007 3.993 14 C -0.541 4.541 15 H 0.087 0.913 16 C 0.110 3.890 17 N -0.871 5.871 18 Si 0.849 3.151 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.245 1.245 22 C -0.174 4.174 23 C -0.174 4.174 24 C 0.123 3.877 25 C -0.160 4.160 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.269 0.731 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.096 0.904 47 H 0.077 0.923 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.782 19.453 -3.822 22.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 C -0.233 4.233 4 O -0.296 6.296 5 C 0.036 3.964 6 C -0.171 4.171 7 C -0.002 4.002 8 N -0.852 5.852 9 S 2.722 3.278 10 O -0.951 6.951 11 O -0.923 6.923 12 C -0.714 4.714 13 C 0.004 3.996 14 C -0.578 4.578 15 H 0.105 0.895 16 C -0.098 4.098 17 N -0.505 5.505 18 Si 0.674 3.326 19 H -0.193 1.193 20 H -0.211 1.211 21 H -0.169 1.169 22 C -0.211 4.211 23 C -0.213 4.213 24 C -0.003 4.003 25 C -0.199 4.199 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.079 0.921 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.109 0.891 45 H 0.088 0.912 46 H 0.114 0.886 47 H 0.095 0.905 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.971 18.962 -3.977 21.790 hybrid contribution -1.639 -0.058 -0.348 1.676 sum -11.610 18.904 -4.324 22.602 Atomic orbital electron populations 1.21851 0.93689 1.02878 1.02210 1.22088 0.94967 0.92268 0.88570 1.22324 1.01562 0.96951 1.02451 1.87970 1.34893 1.70918 1.35840 1.22033 0.84306 0.92595 0.97429 1.22020 0.96205 1.02132 0.96711 1.21326 0.95716 0.84444 0.98742 1.58419 1.71628 1.22413 1.32756 1.04728 0.75911 0.71940 0.75182 1.93481 1.48923 1.79653 1.73000 1.93561 1.83834 1.64767 1.50159 1.30359 1.17659 1.08833 1.14598 1.18726 0.99243 0.94244 0.87389 1.20432 0.93663 1.14405 1.29313 0.89513 1.24840 0.97570 0.93635 0.93742 1.69882 1.36267 1.12108 1.32200 0.87306 0.86695 0.78218 0.80373 1.19271 1.21081 1.16900 1.22936 1.00088 0.99182 0.98942 1.22962 0.93307 0.99050 1.05994 1.21408 0.90651 1.02753 0.85519 1.22579 0.98008 0.97174 1.02137 0.91927 0.91461 0.91863 0.92249 0.92476 0.91822 0.91829 0.92034 0.90535 0.90199 0.88506 0.91199 0.87007 0.87371 0.92101 0.88930 0.90666 0.91028 0.89136 0.91190 0.88559 0.90473 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.56 37.16 0.36 -0.75 16 2 C 0.08 0.67 3.13 -26.73 -0.08 0.58 16 3 C -0.18 -1.27 9.47 37.16 0.35 -0.91 16 4 O -0.38 -4.09 9.64 -35.23 -0.34 -4.43 16 5 C 0.09 0.99 2.36 -26.69 -0.06 0.92 16 6 C -0.13 -1.40 5.73 -26.61 -0.15 -1.55 16 7 C 0.12 1.53 6.31 -3.71 -0.02 1.51 16 8 N -1.02 -15.68 3.21 -113.28 -0.36 -16.05 16 9 S 2.63 55.07 4.53 -107.50 -0.49 54.59 16 10 O -0.96 -22.02 16.72 -57.54 -0.96 -22.98 16 11 O -0.93 -23.16 16.02 -57.54 -0.92 -24.09 16 12 C -0.58 -11.66 5.84 37.16 0.22 -11.44 16 13 C 0.01 0.15 1.11 -155.66 -0.17 -0.02 16 14 C -0.54 -15.27 7.55 -34.44 -0.26 -15.53 16 15 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 16 C 0.11 3.17 5.47 -17.82 -0.10 3.07 16 17 N -0.87 -26.68 13.96 55.43 0.77 -25.91 16 18 Si 0.85 20.90 25.36 -169.99 -4.31 16.59 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.25 -5.51 5.61 56.52 0.32 -5.19 16 22 C -0.17 -3.58 9.88 -26.73 -0.26 -3.84 16 23 C -0.17 -3.66 7.58 -26.73 -0.20 -3.86 16 24 C 0.12 1.64 6.34 -3.49 -0.02 1.62 16 25 C -0.16 -1.80 5.66 -26.39 -0.15 -1.95 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.47 7.42 -51.93 -0.39 0.09 16 30 H 0.06 0.42 7.75 -51.93 -0.40 0.01 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.58 7.43 -51.93 -0.39 0.19 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 1.22 7.10 -51.93 -0.37 0.86 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.11 2.16 6.15 -51.92 -0.32 1.84 16 39 H 0.11 1.74 7.95 -51.92 -0.41 1.32 16 40 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 41 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 42 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 44 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.10 1.42 7.09 -51.93 -0.37 1.05 16 47 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.07 0.71 7.73 -51.93 -0.40 0.30 16 LS Contribution 384.17 15.07 5.79 5.79 Total: -1.00 -34.23 384.17 -9.99 -44.22 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -8.60 Total: 4.41 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: -0.57 Total: -32.15 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.41 Total: -41.95 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -2.22 Total: -51.50 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.31 Total: 16.59 kcal Atomic # 16 Polarization: 55.07 SS G_CDS: -0.49 Total: 54.59 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.23 -9.99 -44.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562714662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.437 kcal (2) G-P(sol) polarization free energy of solvation -34.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds