Wall clock time and date at job start Tue Mar 31 2020 16:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46753 * 2 1 4 4 O 1.42899 * 109.47201 * 119.99977 * 2 1 3 5 5 C 1.42892 * 114.00099 * 152.12573 * 4 2 1 6 6 C 1.53043 * 109.46315 * 152.07405 * 5 4 2 7 7 C 1.53193 * 109.31632 * 181.38272 * 6 5 4 8 8 N 1.46924 * 108.77663 * 305.36839 * 7 6 5 9 9 S 1.65599 * 120.62996 * 233.58502 * 8 7 6 10 10 O 1.42097 * 104.27559 * 333.92274 * 9 8 7 11 11 O 1.42101 * 104.27437 * 206.06921 * 9 8 7 12 12 C 1.81396 * 104.44994 * 89.99875 * 9 8 7 13 13 C 1.52998 * 109.47015 * 188.69161 * 12 9 8 14 14 C 1.50700 * 115.56349 * 319.81955 * 13 12 9 15 15 H 1.07997 * 119.99989 * 99.69634 * 14 13 12 16 16 C 1.37873 * 120.00425 * 279.70072 * 14 13 12 17 17 N 1.31509 * 120.00306 * 190.60791 * 16 14 13 18 18 Si 1.86811 * 119.99820 * 10.60554 * 16 14 13 19 19 H 1.48497 * 109.46623 * 86.27433 * 18 16 14 20 20 H 1.48496 * 109.47044 * 206.27710 * 18 16 14 21 21 H 1.48500 * 109.46679 * 326.27683 * 18 16 14 22 22 C 1.52999 * 117.49919 * 105.51257 * 13 12 9 23 23 C 1.52994 * 60.00282 * 107.49238 * 22 13 12 24 24 C 1.46928 * 118.73823 * 53.85368 * 8 7 6 25 25 C 1.53037 * 109.46093 * 272.14391 * 5 4 2 26 26 H 1.09000 * 109.46902 * 304.72511 * 1 2 3 27 27 H 1.08995 * 109.46921 * 64.72180 * 1 2 3 28 28 H 1.08995 * 109.46511 * 184.72372 * 1 2 3 29 29 H 1.08997 * 109.47580 * 239.99964 * 2 1 3 30 30 H 1.09006 * 109.46759 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47265 * 299.99824 * 3 2 1 32 32 H 1.08996 * 109.46910 * 60.00434 * 3 2 1 33 33 H 1.08999 * 109.46632 * 32.10274 * 5 4 2 34 34 H 1.09000 * 109.49473 * 61.43148 * 6 5 4 35 35 H 1.08994 * 109.52618 * 301.35593 * 6 5 4 36 36 H 1.08991 * 109.58900 * 185.57686 * 7 6 5 37 37 H 1.08998 * 109.69923 * 65.22213 * 7 6 5 38 38 H 1.09006 * 109.47197 * 68.69176 * 12 9 8 39 39 H 1.08998 * 109.47118 * 308.69024 * 12 9 8 40 40 H 0.97003 * 120.00225 * 179.97438 * 17 16 14 41 41 H 1.09001 * 117.49796 * 214.98068 * 22 13 12 42 42 H 1.08995 * 117.49724 * 359.97438 * 22 13 12 43 43 H 1.09006 * 117.49719 * 252.51554 * 23 22 13 44 44 H 1.08994 * 117.50526 * 107.49359 * 23 22 13 45 45 H 1.09001 * 109.58383 * 65.93371 * 24 8 7 46 46 H 1.09005 * 109.58384 * 186.34983 * 24 8 7 47 47 H 1.09006 * 109.49869 * 298.56268 * 25 5 4 48 48 H 1.09001 * 109.50049 * 58.62548 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2881 -1.2838 1.0031 6 6 3.9994 -1.3471 2.3567 7 6 5.3866 -1.9702 2.1715 8 7 5.2354 -3.2722 1.5079 9 16 5.8944 -4.6389 2.1713 10 8 6.9852 -4.1612 2.9466 11 8 6.1063 -5.5002 1.0612 12 6 4.5888 -5.2953 3.2460 13 6 5.1496 -6.4441 4.0866 14 6 6.0866 -7.3794 3.3666 15 1 7.1545 -7.2709 3.4852 16 6 5.5805 -8.3737 2.5565 17 7 6.3752 -9.3149 2.0961 18 14 3.7659 -8.3838 2.1129 19 1 3.5438 -7.5308 0.9178 20 1 3.3367 -9.7740 1.8157 21 1 2.9748 -7.8545 3.2528 22 6 5.4257 -6.1678 5.5658 23 6 4.2392 -7.0442 5.1599 24 6 4.4935 -3.3377 0.2413 25 6 3.1117 -2.7002 0.4509 26 1 -0.3633 0.5854 0.8446 27 1 -0.3633 0.4388 -0.9292 28 1 -0.3632 -1.0242 0.0846 29 1 1.8935 -0.5138 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.8846 -0.6946 0.3066 34 1 3.4157 -1.9570 3.0462 35 1 4.1038 -0.3402 2.7607 36 1 5.8579 -2.1085 3.1445 37 1 6.0041 -1.3159 1.5561 38 1 3.7643 -5.6615 2.6341 39 1 4.2290 -4.5050 3.9049 40 1 6.0191 -10.0146 1.5265 41 1 6.2852 -6.6625 6.0183 42 1 5.2083 -5.1675 5.9401 43 1 3.2406 -6.6205 5.2671 44 1 4.3179 -8.1154 5.3453 45 1 5.0377 -2.7919 -0.5295 46 1 4.3755 -4.3787 -0.0596 47 1 2.5364 -3.2975 1.1584 48 1 2.5837 -2.6563 -0.5017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562714662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:12 Heat of formation + Delta-G solvation = -124.168849 kcal Electronic energy + Delta-G solvation = -28494.349752 eV Core-core repulsion = 24676.118904 eV Total energy + Delta-G solvation = -3818.230848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.30634 -38.80274 -38.15085 -38.02952 -36.75673 -34.35612 -33.96898 -32.10739 -31.60934 -30.16822 -28.07292 -27.63607 -25.03845 -24.43359 -23.28974 -22.02856 -21.73853 -20.96698 -19.83236 -18.88657 -18.47757 -17.73025 -17.23693 -17.05145 -16.57527 -16.01805 -15.83770 -15.61693 -15.46355 -15.24853 -14.91335 -14.82819 -14.54906 -14.36771 -14.19521 -14.02662 -13.56501 -13.27793 -13.16631 -13.04693 -12.96260 -12.90261 -12.78594 -12.73129 -12.66100 -12.34198 -12.28745 -12.21894 -12.14891 -11.88614 -11.76945 -11.62893 -11.57501 -11.31035 -10.81903 -10.79050 -10.37745 -10.34205 -9.93847 -8.39171 -6.53944 -0.59121 1.30647 1.32267 1.43524 1.93797 2.32178 2.68391 2.96325 2.99473 3.13726 3.35775 3.57490 3.81685 3.83418 4.01549 4.03388 4.12843 4.17731 4.21819 4.27731 4.33671 4.36048 4.38499 4.42618 4.45768 4.59231 4.69081 4.75884 4.76681 4.79116 4.89098 4.91253 4.94581 4.95271 5.00256 5.01805 5.15405 5.18427 5.22654 5.27884 5.35034 5.39647 5.49707 5.60921 5.67908 6.16372 6.41905 6.60995 7.23734 8.77065 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017199 B = 0.003906 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.656532 B = 7166.308996 C = 7478.999354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 C -0.172 4.172 4 O -0.390 6.390 5 C 0.095 3.905 6 C -0.126 4.126 7 C 0.116 3.884 8 N -1.008 6.008 9 S 2.622 3.378 10 O -0.993 6.993 11 O -0.987 6.987 12 C -0.575 4.575 13 C -0.031 4.031 14 C -0.542 4.542 15 H 0.029 0.971 16 C 0.051 3.949 17 N -0.930 5.930 18 Si 0.898 3.102 19 H -0.261 1.261 20 H -0.284 1.284 21 H -0.201 1.201 22 C -0.166 4.166 23 C -0.161 4.161 24 C 0.115 3.885 25 C -0.154 4.154 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.156 0.844 40 H 0.270 0.730 41 H 0.077 0.923 42 H 0.115 0.885 43 H 0.111 0.889 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.341 22.475 -3.370 26.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 C -0.230 4.230 4 O -0.310 6.310 5 C 0.037 3.963 6 C -0.165 4.165 7 C -0.009 4.009 8 N -0.847 5.847 9 S 2.721 3.279 10 O -0.984 6.984 11 O -0.977 6.977 12 C -0.707 4.707 13 C -0.033 4.033 14 C -0.579 4.579 15 H 0.047 0.953 16 C -0.151 4.151 17 N -0.566 5.566 18 Si 0.719 3.281 19 H -0.186 1.186 20 H -0.210 1.210 21 H -0.123 1.123 22 C -0.203 4.203 23 C -0.199 4.199 24 C -0.010 4.010 25 C -0.194 4.194 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.141 0.859 39 H 0.174 0.826 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.133 0.867 43 H 0.129 0.871 44 H 0.096 0.904 45 H 0.107 0.893 46 H 0.095 0.905 47 H 0.089 0.911 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.518 22.011 -3.508 26.067 hybrid contribution -0.425 -0.909 -0.471 1.109 sum -13.943 21.102 -3.980 25.604 Atomic orbital electron populations 1.21865 0.93123 1.02503 1.03029 1.22299 0.95494 0.92797 0.88084 1.22298 1.01502 0.96244 1.02949 1.87953 1.34887 1.71135 1.37048 1.22002 0.84601 0.92159 0.97500 1.21977 0.94681 1.02908 0.96979 1.21619 0.97527 0.83033 0.98710 1.57959 1.71568 1.21789 1.33344 1.04398 0.76423 0.72419 0.74699 1.93427 1.51193 1.80196 1.73552 1.93493 1.85112 1.67041 1.52063 1.30188 1.16927 1.08833 1.14748 1.18671 1.00650 0.95344 0.88678 1.20529 0.92193 1.15499 1.29708 0.95256 1.25787 1.02743 0.93047 0.93554 1.70038 1.38902 1.13605 1.34105 0.86517 0.81198 0.78627 0.81759 1.18559 1.21046 1.12286 1.23061 0.99651 1.01109 0.96481 1.23038 0.94980 0.98746 1.03134 1.21617 0.92140 1.02317 0.84908 1.22543 0.96268 0.97485 1.03058 0.92258 0.89737 0.92622 0.91597 0.92525 0.90413 0.92287 0.90722 0.90778 0.88213 0.88882 0.89417 0.85894 0.82628 0.92126 0.90471 0.86730 0.87127 0.90446 0.89332 0.90469 0.91130 0.89079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.56 71.98 0.69 -1.10 16 2 C 0.07 0.97 3.13 30.60 0.10 1.07 16 3 C -0.17 -1.96 9.47 71.98 0.68 -1.28 16 4 O -0.39 -7.17 9.64 -148.98 -1.44 -8.60 16 5 C 0.10 1.66 2.36 30.62 0.07 1.73 16 6 C -0.13 -2.23 5.73 30.67 0.18 -2.06 16 7 C 0.12 2.57 6.31 86.36 0.55 3.12 16 8 N -1.01 -29.48 3.21 -512.30 -1.65 -31.13 16 9 S 2.62 109.95 4.53 -56.49 -0.26 109.69 16 10 O -0.99 -46.36 16.72 -127.65 -2.13 -48.50 16 11 O -0.99 -50.83 16.02 -127.65 -2.05 -52.87 16 12 C -0.58 -21.43 5.84 71.98 0.42 -21.01 16 13 C -0.03 -1.40 1.11 -52.93 -0.06 -1.46 16 14 C -0.54 -31.73 7.55 25.60 0.19 -31.54 16 15 H 0.03 1.98 8.06 -2.91 -0.02 1.95 16 16 C 0.05 3.01 5.47 84.65 0.46 3.48 16 17 N -0.93 -60.09 13.96 21.44 0.30 -59.79 16 18 Si 0.90 42.50 25.36 68.60 1.74 44.24 16 19 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 21 H -0.20 -8.02 5.61 99.48 0.56 -7.46 16 22 C -0.17 -6.42 9.88 30.59 0.30 -6.12 16 23 C -0.16 -6.16 7.58 30.59 0.23 -5.93 16 24 C 0.12 2.88 6.34 86.51 0.55 3.43 16 25 C -0.15 -3.01 5.66 30.82 0.17 -2.84 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.82 7.42 -2.39 -0.02 0.80 16 30 H 0.06 0.65 7.75 -2.38 -0.02 0.63 16 31 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 1.11 7.43 -2.39 -0.02 1.09 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.09 2.16 7.10 -2.39 -0.02 2.14 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.12 4.32 6.15 -2.39 -0.01 4.30 16 39 H 0.16 4.24 7.95 -2.39 -0.02 4.22 16 40 H 0.27 16.23 8.31 -92.71 -0.77 15.46 16 41 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 42 H 0.11 3.52 8.09 -2.39 -0.02 3.50 16 43 H 0.11 3.43 8.14 -2.38 -0.02 3.41 16 44 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 45 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.08 2.24 7.09 -2.38 -0.02 2.23 16 47 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 48 H 0.09 1.46 7.73 -2.39 -0.02 1.44 16 Total: -1.00 -80.03 384.17 -0.18 -80.21 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 0.77 Total: 27.26 kcal Atomic # 6 Polarization: -65.04 SS G_CDS: 4.53 Total: -60.50 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -1.35 Total: -90.92 kcal Atomic # 8 Polarization: -104.36 SS G_CDS: -5.62 Total: -109.97 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.74 Total: 44.24 kcal Atomic # 16 Polarization: 109.95 SS G_CDS: -0.26 Total: 109.69 kcal Total: -80.03 -0.18 -80.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562714662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.963 kcal (2) G-P(sol) polarization free energy of solvation -80.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds