Wall clock time and date at job start Tue Mar 31 2020 17:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.48684 * 2 1 4 4 C 1.53097 * 109.48128 * 120.02354 * 2 1 3 5 5 C 1.53180 * 109.21119 * 62.41005 * 4 2 1 6 6 H 1.09005 * 109.49724 * 297.04659 * 5 4 2 7 7 S 1.81398 * 109.59519 * 176.78148 * 5 4 2 8 8 O 1.42096 * 110.54384 * 297.03849 * 7 5 4 9 9 O 1.42104 * 110.54546 * 73.79174 * 7 5 4 10 10 N 1.65604 * 104.45130 * 185.41483 * 7 5 4 11 11 C 1.46924 * 120.63033 * 269.72262 * 10 7 5 12 12 C 1.52764 * 109.00516 * 233.58333 * 11 10 7 13 13 C 1.53043 * 109.38365 * 305.58480 * 12 11 10 14 14 C 1.52994 * 109.45069 * 181.25766 * 13 12 11 15 15 C 1.50700 * 109.47401 * 64.93841 * 14 13 12 16 16 H 1.07999 * 119.99839 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00302 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99705 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00023 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47338 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46933 * 119.99695 * 19 17 15 22 22 H 1.48500 * 109.47143 * 239.99721 * 19 17 15 23 23 C 1.53041 * 109.53642 * 61.24364 * 13 12 11 24 24 C 1.46924 * 120.62742 * 90.00061 * 10 7 5 25 25 C 1.53177 * 109.03525 * 56.88485 * 5 4 2 26 26 C 1.53098 * 109.21356 * 303.11207 * 25 5 4 27 27 O 1.42898 * 109.48176 * 239.96614 * 2 1 3 28 28 H 1.09001 * 109.47045 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47437 * 300.03232 * 1 2 3 30 30 H 1.09000 * 109.47344 * 60.03385 * 1 2 3 31 31 H 1.09002 * 109.52138 * 182.28026 * 4 2 1 32 32 H 1.09005 * 109.52063 * 302.40434 * 4 2 1 33 33 H 1.09000 * 109.58898 * 353.41773 * 11 10 7 34 34 H 1.09005 * 109.58819 * 113.84402 * 11 10 7 35 35 H 1.09008 * 109.56231 * 185.55297 * 12 11 10 36 36 H 1.08996 * 109.36232 * 65.50041 * 12 11 10 37 37 H 1.08998 * 109.46097 * 301.22704 * 13 12 11 38 38 H 1.08999 * 109.47325 * 184.94567 * 14 13 12 39 39 H 1.09007 * 109.46888 * 304.94211 * 14 13 12 40 40 H 0.96999 * 119.99709 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.50036 * 178.68374 * 23 13 12 42 42 H 1.09001 * 109.49975 * 58.58221 * 23 13 12 43 43 H 1.09004 * 109.58548 * 246.15598 * 24 10 7 44 44 H 1.08995 * 109.58669 * 6.43768 * 24 10 7 45 45 H 1.09002 * 109.52487 * 183.17418 * 25 5 4 46 46 H 1.09004 * 109.52023 * 63.05037 * 25 5 4 47 47 H 1.08999 * 109.47354 * 177.55660 * 26 25 5 48 48 H 1.08999 * 109.48099 * 297.59428 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 1.2497 5 6 1.5771 -2.1817 1.2131 6 1 0.4881 -2.2185 1.2429 7 16 2.2557 -3.0715 2.6408 8 8 3.6752 -3.0983 2.5830 9 8 1.5779 -2.6944 3.8315 10 7 1.8072 -4.6469 2.3972 11 6 0.5356 -5.1543 2.9302 12 6 0.8095 -6.4034 3.7659 13 6 1.5876 -7.4172 2.9239 14 6 1.8355 -8.6815 3.7491 15 6 0.5186 -9.3454 4.0590 16 1 -0.4029 -8.9095 3.7025 17 6 0.4903 -10.5094 4.7975 18 7 1.6126 -11.0405 5.2311 19 14 -1.1420 -11.3327 5.1809 20 1 -2.2476 -10.5428 4.5820 21 1 -1.1500 -12.7046 4.6123 22 1 -1.3259 -11.4058 6.6527 23 6 2.9288 -6.8115 2.5037 24 6 2.6764 -5.5654 1.6490 25 6 2.0765 -2.8322 -0.0807 26 6 1.5645 -2.0285 -1.2789 27 8 2.0066 -0.6743 -1.1663 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5143 0.8897 30 1 -0.3634 0.5133 -0.8903 31 1 3.1298 -0.6873 1.2710 32 1 1.6430 -0.2348 2.1400 33 1 0.0717 -4.3921 3.5563 34 1 -0.1308 -5.4084 2.1059 35 1 -0.1354 -6.8440 4.0843 36 1 1.3977 -6.1304 4.6419 37 1 1.0096 -7.6711 2.0353 38 1 2.4642 -9.3681 3.1821 39 1 2.3361 -8.4152 4.6801 40 1 1.5927 -11.8595 5.7504 41 1 3.4924 -7.5423 1.9238 42 1 3.4970 -6.5345 3.3917 43 1 2.1881 -5.8537 0.7181 44 1 3.6235 -5.0735 1.4278 45 1 1.7037 -3.8547 -0.1418 46 1 3.1665 -2.8409 -0.0868 47 1 1.9531 -2.4623 -2.2003 48 1 0.4749 -2.0550 -1.2956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564907792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:50 Heat of formation + Delta-G solvation = -138.995821 kcal Electronic energy + Delta-G solvation = -28175.193290 eV Core-core repulsion = 24356.319496 eV Total energy + Delta-G solvation = -3818.873793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.12102 -38.35084 -37.23288 -35.98204 -34.36209 -33.96262 -32.64999 -31.92186 -30.74451 -28.69717 -27.68969 -25.02595 -24.19719 -23.75449 -22.86485 -21.43471 -19.94611 -19.56602 -18.77921 -17.60069 -17.44591 -16.44301 -16.39432 -16.24496 -15.67660 -15.07636 -14.88254 -14.55411 -14.42917 -14.26141 -13.92319 -13.60922 -13.42595 -13.30632 -13.21770 -12.86332 -12.47870 -12.27042 -12.16433 -12.12684 -11.99592 -11.79858 -11.72566 -11.71244 -11.47116 -11.26165 -11.17277 -10.89063 -10.71812 -10.70246 -10.49686 -10.37634 -10.09603 -9.81436 -9.61506 -9.33904 -8.96177 -8.63960 -8.34560 -5.99150 -4.00910 0.12986 2.57624 3.30378 3.38316 3.41011 3.42826 3.71182 3.79687 3.96178 4.34052 4.38712 4.45738 4.57862 4.58885 4.80282 4.83813 4.93108 4.95948 5.06633 5.11383 5.26938 5.31573 5.34349 5.36140 5.42505 5.45222 5.52168 5.54931 5.62616 5.71394 5.77806 5.80737 5.85805 5.99548 6.12959 6.42824 6.43254 6.69098 6.70895 6.79382 7.01899 7.05217 7.15043 7.68527 7.83886 8.01219 8.43497 9.05940 9.62813 11.12213 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024190 B = 0.002829 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.240562 B = 9896.735330 C =10027.766967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.097 3.903 3 H 0.109 0.891 4 C -0.138 4.138 5 C -0.599 4.599 6 H 0.137 0.863 7 S 2.608 3.392 8 O -0.951 6.951 9 O -0.954 6.954 10 N -0.992 5.992 11 C 0.116 3.884 12 C -0.116 4.116 13 C -0.078 4.078 14 C 0.026 3.974 15 C -0.515 4.515 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.127 4.127 24 C 0.120 3.880 25 C -0.139 4.139 26 C 0.065 3.935 27 O -0.374 6.374 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.100 0.900 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.169 21.554 -13.213 25.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.038 3.962 3 H 0.127 0.873 4 C -0.178 4.178 5 C -0.706 4.706 6 H 0.155 0.845 7 S 2.702 3.298 8 O -0.942 6.942 9 O -0.945 6.945 10 N -0.831 5.831 11 C -0.009 4.009 12 C -0.155 4.155 13 C -0.097 4.097 14 C -0.011 4.011 15 C -0.553 4.553 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.166 4.166 24 C -0.005 4.005 25 C -0.178 4.178 26 C -0.013 4.013 27 O -0.293 6.293 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.103 0.897 45 H 0.111 0.889 46 H 0.107 0.893 47 H 0.118 0.882 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.499 21.826 -12.514 25.164 hybrid contribution -1.508 -0.789 0.024 1.702 sum -2.007 21.036 -12.490 24.547 Atomic orbital electron populations 1.22492 0.96091 1.03037 1.03119 1.22043 0.93658 0.96222 0.84285 0.87317 1.22034 1.02895 0.91907 1.00914 1.30700 1.12966 1.08434 1.18540 0.84496 1.05201 0.74804 0.73868 0.75951 1.93570 1.27887 1.85570 1.87147 1.93584 1.76319 1.82712 1.41841 1.57585 1.30669 1.25714 1.69127 1.21550 0.83359 0.98276 0.97687 1.21766 1.02268 0.93477 0.97972 1.21151 0.93452 0.96497 0.98589 1.19142 0.96907 0.90451 0.94616 1.21279 0.93093 1.07967 1.32969 0.92548 1.25030 0.96088 0.97345 0.96083 1.69976 1.25850 1.20527 1.37129 0.86591 0.84290 0.79399 0.78026 1.19783 1.21144 1.21108 1.21971 0.99463 0.95442 0.99711 1.21557 0.93213 0.91467 0.94294 1.22016 1.02923 1.00203 0.92610 1.22511 0.99022 0.82045 0.97680 1.88002 1.73689 1.24752 1.42818 0.91706 0.91115 0.91488 0.89308 0.89410 0.89780 0.91814 0.89774 0.92177 0.92393 0.96610 0.96587 0.93122 0.91157 0.91866 0.91754 0.89658 0.88913 0.89259 0.88184 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.19 8.65 37.16 0.32 -0.87 16 2 C 0.10 0.72 3.91 -26.68 -0.10 0.61 16 3 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.14 -1.13 4.93 -26.59 -0.13 -1.26 16 5 C -0.60 -5.21 2.65 -26.55 -0.07 -5.28 16 6 H 0.14 0.97 6.62 -51.92 -0.34 0.63 16 7 S 2.61 33.32 4.91 -107.50 -0.53 32.79 16 8 O -0.95 -14.66 16.58 -57.54 -0.95 -15.61 16 9 O -0.95 -15.07 16.58 -57.54 -0.95 -16.03 16 10 N -0.99 -12.95 2.87 -113.76 -0.33 -13.28 16 11 C 0.12 1.59 6.40 -3.93 -0.03 1.56 16 12 C -0.12 -2.06 5.17 -26.83 -0.14 -2.20 16 13 C -0.08 -1.50 2.10 -90.58 -0.19 -1.69 16 14 C 0.03 0.64 4.45 -27.89 -0.12 0.52 16 15 C -0.51 -13.96 8.39 -34.44 -0.29 -14.25 16 16 H 0.06 1.47 7.06 -52.49 -0.37 1.10 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 19 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 C -0.13 -2.07 5.36 -26.61 -0.14 -2.22 16 24 C 0.12 1.53 5.35 -3.71 -0.02 1.51 16 25 C -0.14 -1.10 4.97 -26.59 -0.13 -1.23 16 26 C 0.06 0.48 6.52 37.21 0.24 0.72 16 27 O -0.37 -3.39 10.60 -35.23 -0.37 -3.77 16 28 H 0.06 0.41 4.98 -51.93 -0.26 0.15 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.10 6.85 -51.93 -0.36 0.74 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.58 6.91 -51.92 -0.36 1.22 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.06 0.68 7.73 -51.93 -0.40 0.27 16 44 H 0.09 1.02 6.86 -51.93 -0.36 0.66 16 45 H 0.09 0.63 6.71 -51.93 -0.35 0.28 16 46 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.37 6.34 -51.93 -0.33 0.04 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -34.14 372.37 -10.89 -45.03 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -8.18 Total: -2.47 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -0.90 Total: -22.61 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.41 Total: -39.24 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -2.28 Total: -35.41 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 33.32 SS G_CDS: -0.53 Total: 32.79 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.14 -10.89 -45.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564907792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.970 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds