Wall clock time and date at job start Tue Mar 31 2020 17:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.48684 * 2 1 4 4 C 1.53097 * 109.48128 * 120.02354 * 2 1 3 5 5 C 1.53180 * 109.21119 * 62.41005 * 4 2 1 6 6 H 1.09005 * 109.49724 * 297.04659 * 5 4 2 7 7 S 1.81398 * 109.59519 * 176.78148 * 5 4 2 8 8 O 1.42096 * 110.54384 * 297.03849 * 7 5 4 9 9 O 1.42104 * 110.54546 * 73.79174 * 7 5 4 10 10 N 1.65604 * 104.45130 * 185.41483 * 7 5 4 11 11 C 1.46924 * 120.63033 * 269.72262 * 10 7 5 12 12 C 1.52764 * 109.00516 * 233.58333 * 11 10 7 13 13 C 1.53043 * 109.38365 * 305.58480 * 12 11 10 14 14 C 1.52994 * 109.45069 * 181.25766 * 13 12 11 15 15 C 1.50700 * 109.47401 * 64.93841 * 14 13 12 16 16 H 1.07999 * 119.99839 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00302 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99705 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00023 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47338 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46933 * 119.99695 * 19 17 15 22 22 H 1.48500 * 109.47143 * 239.99721 * 19 17 15 23 23 C 1.53041 * 109.53642 * 61.24364 * 13 12 11 24 24 C 1.46924 * 120.62742 * 90.00061 * 10 7 5 25 25 C 1.53177 * 109.03525 * 56.88485 * 5 4 2 26 26 C 1.53098 * 109.21356 * 303.11207 * 25 5 4 27 27 O 1.42898 * 109.48176 * 239.96614 * 2 1 3 28 28 H 1.09001 * 109.47045 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47437 * 300.03232 * 1 2 3 30 30 H 1.09000 * 109.47344 * 60.03385 * 1 2 3 31 31 H 1.09002 * 109.52138 * 182.28026 * 4 2 1 32 32 H 1.09005 * 109.52063 * 302.40434 * 4 2 1 33 33 H 1.09000 * 109.58898 * 353.41773 * 11 10 7 34 34 H 1.09005 * 109.58819 * 113.84402 * 11 10 7 35 35 H 1.09008 * 109.56231 * 185.55297 * 12 11 10 36 36 H 1.08996 * 109.36232 * 65.50041 * 12 11 10 37 37 H 1.08998 * 109.46097 * 301.22704 * 13 12 11 38 38 H 1.08999 * 109.47325 * 184.94567 * 14 13 12 39 39 H 1.09007 * 109.46888 * 304.94211 * 14 13 12 40 40 H 0.96999 * 119.99709 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.50036 * 178.68374 * 23 13 12 42 42 H 1.09001 * 109.49975 * 58.58221 * 23 13 12 43 43 H 1.09004 * 109.58548 * 246.15598 * 24 10 7 44 44 H 1.08995 * 109.58669 * 6.43768 * 24 10 7 45 45 H 1.09002 * 109.52487 * 183.17418 * 25 5 4 46 46 H 1.09004 * 109.52023 * 63.05037 * 25 5 4 47 47 H 1.08999 * 109.47354 * 177.55660 * 26 25 5 48 48 H 1.08999 * 109.48099 * 297.59428 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 1.2497 5 6 1.5771 -2.1817 1.2131 6 1 0.4881 -2.2185 1.2429 7 16 2.2557 -3.0715 2.6408 8 8 3.6752 -3.0983 2.5830 9 8 1.5779 -2.6944 3.8315 10 7 1.8072 -4.6469 2.3972 11 6 0.5356 -5.1543 2.9302 12 6 0.8095 -6.4034 3.7659 13 6 1.5876 -7.4172 2.9239 14 6 1.8355 -8.6815 3.7491 15 6 0.5186 -9.3454 4.0590 16 1 -0.4029 -8.9095 3.7025 17 6 0.4903 -10.5094 4.7975 18 7 1.6126 -11.0405 5.2311 19 14 -1.1420 -11.3327 5.1809 20 1 -2.2476 -10.5428 4.5820 21 1 -1.1500 -12.7046 4.6123 22 1 -1.3259 -11.4058 6.6527 23 6 2.9288 -6.8115 2.5037 24 6 2.6764 -5.5654 1.6490 25 6 2.0765 -2.8322 -0.0807 26 6 1.5645 -2.0285 -1.2789 27 8 2.0066 -0.6743 -1.1663 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5143 0.8897 30 1 -0.3634 0.5133 -0.8903 31 1 3.1298 -0.6873 1.2710 32 1 1.6430 -0.2348 2.1400 33 1 0.0717 -4.3921 3.5563 34 1 -0.1308 -5.4084 2.1059 35 1 -0.1354 -6.8440 4.0843 36 1 1.3977 -6.1304 4.6419 37 1 1.0096 -7.6711 2.0353 38 1 2.4642 -9.3681 3.1821 39 1 2.3361 -8.4152 4.6801 40 1 1.5927 -11.8595 5.7504 41 1 3.4924 -7.5423 1.9238 42 1 3.4970 -6.5345 3.3917 43 1 2.1881 -5.8537 0.7181 44 1 3.6235 -5.0735 1.4278 45 1 1.7037 -3.8547 -0.1418 46 1 3.1665 -2.8409 -0.0868 47 1 1.9531 -2.4623 -2.2003 48 1 0.4749 -2.0550 -1.2956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564907792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:49 Heat of formation + Delta-G solvation = -162.543667 kcal Electronic energy + Delta-G solvation = -28176.214401 eV Core-core repulsion = 24356.319496 eV Total energy + Delta-G solvation = -3819.894905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.69937 -39.64201 -38.32868 -37.08208 -35.71547 -34.97806 -33.82347 -33.11901 -31.96296 -29.50350 -29.20749 -26.06353 -25.52366 -24.43941 -24.02429 -22.99268 -21.06011 -20.46158 -19.79924 -18.72489 -18.37769 -18.24375 -17.25447 -17.01113 -16.55963 -16.51824 -15.69543 -15.64922 -15.38562 -15.26386 -14.99941 -14.95594 -14.78662 -14.49522 -14.00589 -13.94386 -13.58187 -13.38694 -13.31178 -13.26897 -13.08535 -12.86519 -12.77965 -12.75077 -12.56657 -12.47849 -12.28168 -12.19584 -12.08724 -11.99208 -11.88421 -11.69887 -11.30176 -11.06595 -10.99046 -10.79452 -10.52078 -10.45842 -9.80347 -8.15712 -6.25142 -0.84172 1.40997 1.41734 1.54189 1.58229 2.43194 2.81246 2.93078 2.98584 3.18088 3.25115 3.52767 3.70009 3.84316 3.97585 4.07800 4.08101 4.10106 4.31140 4.34911 4.39093 4.41798 4.48045 4.53219 4.54553 4.58633 4.64205 4.74417 4.83838 4.87159 4.90865 4.97509 4.98958 5.02174 5.08564 5.14303 5.31415 5.33530 5.37129 5.41207 5.44750 5.59558 5.70194 5.85634 5.92680 6.27505 6.30781 6.92565 7.43633 8.96689 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024190 B = 0.002829 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.240562 B = 9896.735330 C =10027.766967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.096 3.904 3 H 0.120 0.880 4 C -0.149 4.149 5 C -0.565 4.565 6 H 0.164 0.836 7 S 2.603 3.397 8 O -0.987 6.987 9 O -0.993 6.993 10 N -0.996 5.996 11 C 0.124 3.876 12 C -0.116 4.116 13 C -0.069 4.069 14 C 0.029 3.971 15 C -0.524 4.524 16 H 0.069 0.931 17 C -0.007 4.007 18 N -0.939 5.939 19 Si 0.962 3.038 20 H -0.256 1.256 21 H -0.281 1.281 22 H -0.285 1.285 23 C -0.128 4.128 24 C 0.124 3.876 25 C -0.144 4.144 26 C 0.062 3.938 27 O -0.393 6.393 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.030 0.970 37 H 0.073 0.927 38 H -0.012 1.012 39 H -0.023 1.023 40 H 0.260 0.740 41 H 0.075 0.925 42 H 0.036 0.964 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.081 0.919 47 H 0.113 0.887 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.671 23.081 -15.811 28.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.037 3.963 3 H 0.138 0.862 4 C -0.188 4.188 5 C -0.678 4.678 6 H 0.182 0.818 7 S 2.703 3.297 8 O -0.978 6.978 9 O -0.983 6.983 10 N -0.834 5.834 11 C -0.001 4.001 12 C -0.156 4.156 13 C -0.088 4.088 14 C -0.008 4.008 15 C -0.562 4.562 16 H 0.087 0.913 17 C -0.204 4.204 18 N -0.581 5.581 19 Si 0.787 3.213 20 H -0.179 1.179 21 H -0.207 1.207 22 H -0.211 1.211 23 C -0.167 4.167 24 C 0.000 4.000 25 C -0.183 4.183 26 C -0.015 4.015 27 O -0.312 6.312 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.007 0.993 39 H -0.005 1.005 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.055 0.945 43 H 0.121 0.879 44 H 0.113 0.887 45 H 0.129 0.871 46 H 0.100 0.900 47 H 0.131 0.869 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.985 23.334 -15.074 27.940 hybrid contribution -0.658 -1.218 0.824 1.611 sum -3.643 22.116 -14.250 26.560 Atomic orbital electron populations 1.22505 0.94974 1.03443 1.03817 1.22165 0.94541 0.96478 0.83131 0.86231 1.22205 1.02740 0.91627 1.02216 1.30393 1.14061 1.07759 1.15612 0.81845 1.05175 0.73957 0.73911 0.76675 1.93519 1.30303 1.85992 1.87976 1.93530 1.76544 1.83116 1.45130 1.57485 1.30411 1.26146 1.69396 1.21489 0.84118 0.96135 0.98365 1.21700 1.00796 0.95383 0.97678 1.20994 0.95441 0.94231 0.98131 1.19065 0.95467 0.92790 0.93490 1.21727 0.94169 1.07940 1.32364 0.91298 1.26008 0.99913 0.98348 0.96096 1.70132 1.28490 1.21172 1.38269 0.85444 0.79911 0.78329 0.77636 1.17909 1.20719 1.21121 1.21933 0.97578 0.97596 0.99592 1.21596 0.94387 0.89497 0.94539 1.22157 1.02688 1.01321 0.92095 1.22675 0.99962 0.81190 0.97723 1.87988 1.74221 1.25642 1.43360 0.91390 0.90219 0.91104 0.90071 0.88312 0.89072 0.88179 0.90970 0.95058 0.90867 0.99325 1.00461 0.93120 0.90663 0.94513 0.87929 0.88723 0.87085 0.90032 0.86893 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.69 8.65 71.98 0.62 -1.07 16 2 C 0.10 1.13 3.91 30.63 0.12 1.25 16 3 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 4 C -0.15 -2.07 4.93 30.69 0.15 -1.92 16 5 C -0.57 -8.11 2.65 30.71 0.08 -8.03 16 6 H 0.16 1.57 6.62 -2.39 -0.02 1.56 16 7 S 2.60 63.51 4.91 -56.49 -0.28 63.23 16 8 O -0.99 -30.38 16.58 -127.65 -2.12 -32.50 16 9 O -0.99 -30.99 16.58 -127.65 -2.12 -33.10 16 10 N -1.00 -24.17 2.87 -513.84 -1.48 -25.65 16 11 C 0.12 3.12 6.40 86.22 0.55 3.67 16 12 C -0.12 -4.17 5.17 30.53 0.16 -4.01 16 13 C -0.07 -2.67 2.10 -10.77 -0.02 -2.69 16 14 C 0.03 1.51 4.45 29.85 0.13 1.64 16 15 C -0.52 -28.89 8.39 25.60 0.21 -28.68 16 16 H 0.07 3.55 7.06 -2.91 -0.02 3.53 16 17 C -0.01 -0.40 5.46 84.65 0.46 0.07 16 18 N -0.94 -57.95 13.29 21.45 0.28 -57.67 16 19 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 20 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 22 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 23 C -0.13 -4.22 5.36 30.67 0.16 -4.05 16 24 C 0.12 2.92 5.35 86.36 0.46 3.39 16 25 C -0.14 -1.76 4.97 30.69 0.15 -1.60 16 26 C 0.06 0.67 6.52 72.01 0.47 1.14 16 27 O -0.39 -5.95 10.60 -148.98 -1.58 -7.53 16 28 H 0.07 0.56 4.98 -2.39 -0.01 0.54 16 29 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.09 2.21 6.85 -2.39 -0.02 2.19 16 34 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.07 2.71 6.91 -2.38 -0.02 2.69 16 36 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 38 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 39 H -0.02 -1.36 8.14 -2.38 -0.02 -1.38 16 40 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.10 1.70 7.73 -2.38 -0.02 1.68 16 44 H 0.09 2.10 6.86 -2.39 -0.02 2.08 16 45 H 0.11 0.97 6.71 -2.39 -0.02 0.95 16 46 H 0.08 1.16 8.14 -2.38 -0.02 1.15 16 47 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.07 0.59 6.34 -2.39 -0.02 0.57 16 Total: -1.00 -77.66 372.37 -0.60 -78.27 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.93 Total: 9.84 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 3.72 Total: -40.90 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -1.19 Total: -83.32 kcal Atomic # 8 Polarization: -67.32 SS G_CDS: -5.81 Total: -73.13 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: 63.51 SS G_CDS: -0.28 Total: 63.23 kcal Total: -77.66 -0.60 -78.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564907792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.276 kcal (2) G-P(sol) polarization free energy of solvation -77.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds